Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
14:14:58 (3146627): wrapper (7.7.26015): starting
14:14:58 (3146627): wrapper: running run_atlas (--nthreads 12)
[2024-11-08 14:14:58] Arguments: --nthreads 12
[2024-11-08 14:14:58] Threads: 12
[2024-11-08 14:14:58] Checking for CVMFS
[2024-11-08 14:14:58] Probing /cvmfs/atlas.cern.ch... OK
[2024-11-08 14:14:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-11-08 14:14:58] Running cvmfs_config stat atlas.cern.ch
[2024-11-08 14:14:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-11-08 14:14:58] 2.11.5.0 2308668 271 55248 139252 1 55 3377766 4194304 915 130560 0 648905 97.735 1665078 3738 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.150.1:3128 1
[2024-11-08 14:14:58] CVMFS is ok
[2024-11-08 14:14:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-11-08 14:14:58] Checking for apptainer binary...
[2024-11-08 14:14:58] apptainer is not installed, using version from CVMFS
[2024-11-08 14:14:58] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-11-08 14:14:59] Trebeth
[2024-11-08 14:14:59] apptainer works
[2024-11-08 14:14:59] Set ATHENA_PROC_NUMBER=12
[2024-11-08 14:14:59] Set ATHENA_CORE_NUMBER=12
[2024-11-08 14:14:59] Starting ATLAS job with PandaID=6395538570
[2024-11-08 14:14:59] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-11-08 15:33:59]  *** The last 200 lines of the pilot log: ***
[2024-11-08 15:33:59]  domain=
[2024-11-08 15:33:59]  filesize=355545
[2024-11-08 15:33:59]  filetype=log
[2024-11-08 15:33:59]  guid=253f3276-81ad-4d39-b58d-e8532f1e0253
[2024-11-08 15:33:59]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-11-08 15:33:59]  is_altstaged=None
[2024-11-08 15:33:59]  is_tar=False
[2024-11-08 15:33:59]  lfn=log.41944689._002806.job.log.tgz.1
[2024-11-08 15:33:59]  mtime=0
[2024-11-08 15:33:59]  protocol_id=None
[2024-11-08 15:33:59]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-11-08 15:33:59]  replicas=None
[2024-11-08 15:33:59]  scope=mc23_13p6TeV
[2024-11-08 15:33:59]  status=None
[2024-11-08 15:33:59]  status_code=0
[2024-11-08 15:33:59]  storage_token=
[2024-11-08 15:33:59]  surl=/var/lib/boinc-client/slots/0/PanDA_Pilot-6395538570/log.41944689._002806.job.log.tgz.1
[2024-11-08 15:33:59]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/96/f3/log.41944689._002806.job.log.tgz.1
[2024-11-08 15:33:59]  workdir=None
[2024-11-08 15:33:59] ]
[2024-11-08 15:33:59] 2024-11-08 20:33:28,951 | INFO     | transferring file log.41944689._002806.job.log.tgz.1 from /var/lib/boinc-client/slots/0/PanDA_Pilot-6395538570/log.41944689._002806.job.log.tgz.1 to /var/lib/boinc
[2024-11-08 15:33:59] 2024-11-08 20:33:28,951 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/0/PanDA_Pilot-6395538570/log.41944689._002806.job.log.tgz.1 /var/lib/boinc-client/slots/0/log.419446
[2024-11-08 15:33:59] 2024-11-08 20:33:28,969 | INFO     | adding to output.list: log.41944689._002806.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/96/f3/log.41944689._002806.job.log.tg
[2024-11-08 15:33:59] 2024-11-08 20:33:28,970 | INFO     | alt stage-out settings: ['pl', 'pw', 'w', 'default'], is_unified=False, altstageout=False, remain_files=0, has_altstorage=True
[2024-11-08 15:33:59] 2024-11-08 20:33:28,970 | INFO     | summary of transferred files:
[2024-11-08 15:33:59] 2024-11-08 20:33:28,970 | INFO     |  -- lfn=log.41944689._002806.job.log.tgz.1, status_code=0, status=transferred
[2024-11-08 15:33:59] 2024-11-08 20:33:28,970 | INFO     | stage-out finished correctly
[2024-11-08 15:33:59] 2024-11-08 20:33:29,629 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-11-08 15:33:59] 2024-11-08 20:33:32,598 | INFO     | job 6395538570 has state=finished
[2024-11-08 15:33:59] 2024-11-08 20:33:32,598 | INFO     | preparing for final server update for job 6395538570 in state='finished'
[2024-11-08 15:33:59] 2024-11-08 20:33:32,599 | INFO     | this job has now completed (state=finished)
[2024-11-08 15:33:59] 2024-11-08 20:33:32,599 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-11-08 15:33:59] 2024-11-08 20:33:32,599 | INFO     | log transfer has been attempted: DONE
[2024-11-08 15:33:59] 2024-11-08 20:33:32,600 | INFO     | job 6395538570 has finished - writing final server update
[2024-11-08 15:33:59] 2024-11-08 20:33:32,600 | INFO     | total number of processed events: 400 (read)
[2024-11-08 15:33:59] 2024-11-08 20:33:32,624 | INFO     | executing command: lscpu
[2024-11-08 15:33:59] 2024-11-08 20:33:32,682 | INFO     | found 28 cores (14 cores per socket, 2 sockets)
[2024-11-08 15:33:59] 2024-11-08 20:33:32,705 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-11-08 15:33:59] 2024-11-08 20:33:35,654 | INFO     | 4709s have passed since pilot start
[2024-11-08 15:33:59] 2024-11-08 20:33:38,524 | INFO     | CPU arch script returned: x86-64-v3
[2024-11-08 15:33:59] 2024-11-08 20:33:38,524 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6395538570/memory_monitor_summary.json (trf name=prmon)
[2024-11-08 15:33:59] 2024-11-08 20:33:38,532 | INFO     | extracted standard info from prmon json
[2024-11-08 15:33:59] 2024-11-08 20:33:38,532 | INFO     | extracted standard memory fields from prmon json
[2024-11-08 15:33:59] 2024-11-08 20:33:38,533 | WARNING  | GPU info not found in prmon json: 'gpu'
[2024-11-08 15:33:59] 2024-11-08 20:33:38,534 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-11-08 15:33:59] 2024-11-08 20:33:38,534 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-11-08 15:33:59] 2024-11-08 20:33:38,537 | INFO     | fitting pss+swap vs Time
[2024-11-08 15:33:59] 2024-11-08 20:33:38,537 | INFO     | model: linear, x: [1731093649.0, 1731093710.0, 1731093771.0, 1731093832.0, 1731093893.0, 1731093954.0, 1731094015.0, 1731094076.0, 1731094137.0, 1731094198.0, 1731
[2024-11-08 15:33:59] 2024-11-08 20:33:38,537 | INFO     | sum of square deviations: 106336877.5
[2024-11-08 15:33:59] 2024-11-08 20:33:38,538 | INFO     | sum of deviations: 6326056087.499999
[2024-11-08 15:33:59] 2024-11-08 20:33:38,539 | INFO     | mean x: 1731095753.5
[2024-11-08 15:33:59] 2024-11-08 20:33:38,539 | INFO     | mean y: 2829033.785714286
[2024-11-08 15:33:59] 2024-11-08 20:33:38,539 | INFO     | -- intersect: -102981282282.3856
[2024-11-08 15:33:59] 2024-11-08 20:33:38,539 | INFO     | intersect: -102981282282.3856
[2024-11-08 15:33:59] 2024-11-08 20:33:38,539 | INFO     | chi2: 0.5999706712512352
[2024-11-08 15:33:59] 2024-11-08 20:33:38,540 | INFO     | -- intersect: -102981282282.3856
[2024-11-08 15:33:59] 2024-11-08 20:33:38,540 | INFO     | current memory leak: 59.49 B/s (using 70 data points, chi2=0.60)
[2024-11-08 15:33:59] 2024-11-08 20:33:38,540 | INFO     | ..............................
[2024-11-08 15:33:59] 2024-11-08 20:33:38,541 | INFO     | . Timing measurements:
[2024-11-08 15:33:59] 2024-11-08 20:33:38,541 | INFO     | . get job = 0 s
[2024-11-08 15:33:59] 2024-11-08 20:33:38,541 | INFO     | . initial setup = 13 s
[2024-11-08 15:33:59] 2024-11-08 20:33:38,541 | INFO     | . payload setup = 5 s
[2024-11-08 15:33:59] 2024-11-08 20:33:38,541 | INFO     | . stage-in = 0 s
[2024-11-08 15:33:59] 2024-11-08 20:33:38,541 | INFO     | . payload execution = 4664 s
[2024-11-08 15:33:59] 2024-11-08 20:33:38,541 | INFO     | . stage-out = 0 s
[2024-11-08 15:33:59] 2024-11-08 20:33:38,541 | INFO     | . log creation = 0 s
[2024-11-08 15:33:59] 2024-11-08 20:33:38,541 | INFO     | ..............................
[2024-11-08 15:33:59] 2024-11-08 20:33:38,656 | INFO     | 
[2024-11-08 15:33:59] 2024-11-08 20:33:38,666 | INFO     | job summary report
[2024-11-08 15:33:59] 2024-11-08 20:33:38,671 | WARNING  | process 3158773 is no longer using CPU - aborting
[2024-11-08 15:33:59] 2024-11-08 20:33:38,672 | INFO     | --------------------------------------------------
[2024-11-08 15:33:59] 2024-11-08 20:33:38,672 | INFO     | aborting job monitoring since job object (job id=6395538570) has expired
[2024-11-08 15:33:59] 2024-11-08 20:33:38,672 | INFO     | PanDA job id: 6395538570
[2024-11-08 15:33:59] 2024-11-08 20:33:38,672 | INFO     | task id: 41944689
[2024-11-08 15:33:59] 2024-11-08 20:33:38,673 | INFO     | errors: (none)
[2024-11-08 15:33:59] 2024-11-08 20:33:38,673 | INFO     | status: LOG_TRANSFER = DONE 
[2024-11-08 15:33:59] 2024-11-08 20:33:38,673 | INFO     | pilot state: finished 
[2024-11-08 15:33:59] 2024-11-08 20:33:38,673 | INFO     | transexitcode: 0
[2024-11-08 15:33:59] 2024-11-08 20:33:38,673 | INFO     | exeerrorcode: 0
[2024-11-08 15:33:59] 2024-11-08 20:33:38,673 | INFO     | exeerrordiag: 
[2024-11-08 15:33:59] 2024-11-08 20:33:38,673 | INFO     | exitcode: 0
[2024-11-08 15:33:59] 2024-11-08 20:33:38,673 | INFO     | exitmsg: OK
[2024-11-08 15:33:59] 2024-11-08 20:33:38,673 | INFO     | cpuconsumptiontime: 46172 s
[2024-11-08 15:33:59] 2024-11-08 20:33:38,673 | INFO     | nevents: 400
[2024-11-08 15:33:59] 2024-11-08 20:33:38,673 | INFO     | neventsw: 0
[2024-11-08 15:33:59] 2024-11-08 20:33:38,673 | INFO     | pid: 3158773
[2024-11-08 15:33:59] 2024-11-08 20:33:38,673 | INFO     | pgrp: 3158773
[2024-11-08 15:33:59] 2024-11-08 20:33:38,674 | INFO     | corecount: 12
[2024-11-08 15:33:59] 2024-11-08 20:33:38,674 | INFO     | event service: False
[2024-11-08 15:33:59] 2024-11-08 20:33:38,674 | INFO     | sizes: {0: 2404385, 1: 2404527, 5: 2404733, 11: 2404789, 4673: 2430914, 4674: 2439952, 4675: 2440136, 4683: 2440306}
[2024-11-08 15:33:59] 2024-11-08 20:33:38,674 | INFO     | --------------------------------------------------
[2024-11-08 15:33:59] 2024-11-08 20:33:38,674 | INFO     | 
[2024-11-08 15:33:59] 2024-11-08 20:33:38,674 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2024-11-08 15:33:59] 2024-11-08 20:33:38,695 | INFO     | queue jobs had 0 job(s) [purged]
[2024-11-08 15:33:59] 2024-11-08 20:33:38,696 | INFO     | queue payloads had 0 job(s) [purged]
[2024-11-08 15:33:59] 2024-11-08 20:33:38,696 | INFO     | queue data_in had 0 job(s) [purged]
[2024-11-08 15:33:59] 2024-11-08 20:33:38,696 | INFO     | queue data_out had 0 job(s) [purged]
[2024-11-08 15:33:59] 2024-11-08 20:33:38,696 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-11-08 15:33:59] 2024-11-08 20:33:38,696 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-11-08 15:33:59] 2024-11-08 20:33:38,696 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-11-08 15:33:59] 2024-11-08 20:33:38,696 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-11-08 15:33:59] 2024-11-08 20:33:38,696 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-11-08 15:33:59] 2024-11-08 20:33:38,696 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-11-08 15:33:59] 2024-11-08 20:33:38,697 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-11-08 15:33:59] 2024-11-08 20:33:38,697 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-11-08 15:33:59] 2024-11-08 20:33:38,697 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-11-08 15:33:59] 2024-11-08 20:33:38,697 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-11-08 15:33:59] 2024-11-08 20:33:38,697 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-11-08 15:33:59] 2024-11-08 20:33:38,697 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-11-08 15:33:59] 2024-11-08 20:33:38,697 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-11-08 15:33:59] 2024-11-08 20:33:38,697 | INFO     | queue completed_jobids has 1 job(s)
[2024-11-08 15:33:59] 2024-11-08 20:33:38,698 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-11-08 15:33:59] 2024-11-08 20:33:38,698 | INFO     | queue messages had 0 job(s) [purged]
[2024-11-08 15:33:59] 2024-11-08 20:33:38,698 | INFO     | job 6395538570 has completed (purged errors)
[2024-11-08 15:33:59] 2024-11-08 20:33:38,698 | INFO     | overall cleanup function is called
[2024-11-08 15:33:59] 2024-11-08 20:33:39,706 | INFO     | --- collectZombieJob: --- 10, [3158773]
[2024-11-08 15:33:59] 2024-11-08 20:33:39,706 | INFO     | zombie collector waiting for pid 3158773
[2024-11-08 15:33:59] 2024-11-08 20:33:39,706 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-11-08 15:33:59] 2024-11-08 20:33:39,706 | INFO     | collected zombie processes
[2024-11-08 15:33:59] 2024-11-08 20:33:39,707 | INFO     | will attempt to kill all subprocesses of pid=3158773
[2024-11-08 15:33:59] 2024-11-08 20:33:39,831 | INFO     | process IDs to be killed: [3158773] (in reverse order)
[2024-11-08 15:33:59] 2024-11-08 20:33:39,947 | WARNING  | found no corresponding commands to process id(s)
[2024-11-08 15:33:59] 2024-11-08 20:33:39,948 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-11-08 15:33:59] 2024-11-08 20:33:39,958 | INFO     | did not find any defunct processes belonging to 3158773
[2024-11-08 15:33:59] 2024-11-08 20:33:39,968 | INFO     | did not find any defunct processes belonging to 3158773
[2024-11-08 15:33:59] 2024-11-08 20:33:39,968 | INFO     | ready for new job
[2024-11-08 15:33:59] 2024-11-08 20:33:39,969 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-11-08 15:33:59] 2024-11-08 20:33:39,971 | INFO     | **************************************
[2024-11-08 15:33:59] 2024-11-08 20:33:39,972 | INFO     | ***  PanDA Pilot version 3.9.1.13  ***
[2024-11-08 15:33:59] 2024-11-08 20:33:39,972 | INFO     | **************************************
[2024-11-08 15:33:59] 2024-11-08 20:33:39,972 | INFO     | 
[2024-11-08 15:33:59] 2024-11-08 20:33:39,993 | INFO     | architecture information:
[2024-11-08 15:33:59] 2024-11-08 20:33:39,994 | INFO     | executing command: cat /etc/os-release
[2024-11-08 15:33:59] 2024-11-08 20:33:40,011 | INFO     | cat /etc/os-release:
[2024-11-08 15:33:59] NAME="CentOS Linux"
[2024-11-08 15:33:59] VERSION="7 (Core)"
[2024-11-08 15:33:59] ID="centos"
[2024-11-08 15:33:59] ID_LIKE="rhel fedora"
[2024-11-08 15:33:59] VERSION_ID="7"
[2024-11-08 15:33:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-11-08 15:33:59] ANSI_COLOR="0;31"
[2024-11-08 15:33:59] CPE_NAME="cpe:/o:centos:centos:7"
[2024-11-08 15:33:59] HOME_URL="https://www.centos.org/"
[2024-11-08 15:33:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-11-08 15:33:59] 
[2024-11-08 15:33:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-11-08 15:33:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-11-08 15:33:59] REDHAT_SUPPORT_PRODUCT="centos"
[2024-11-08 15:33:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-11-08 15:33:59] 
[2024-11-08 15:33:59] 2024-11-08 20:33:40,011 | INFO     | **************************************
[2024-11-08 15:33:59] 2024-11-08 20:33:40,514 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2024-11-08 15:33:59] 2024-11-08 20:33:40,534 | INFO     | sufficient remaining disk space (398873067520 B)
[2024-11-08 15:33:59] 2024-11-08 20:33:40,535 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-11-08 15:33:59] 2024-11-08 20:33:40,535 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-11-08 15:33:59] 2024-11-08 20:33:40,535 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-11-08 15:33:59] 2024-11-08 20:33:40,535 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-11-08 15:33:59] 2024-11-08 20:33:40,535 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-11-08 15:33:59] 2024-11-08 20:33:40,536 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-11-08 15:33:59] 2024-11-08 20:33:40,536 | INFO     | aborting loop
[2024-11-08 15:33:59] 2024-11-08 20:33:40,672 | INFO     | found 0 job(s) in 20 queues
[2024-11-08 15:33:59] 2024-11-08 20:33:40,672 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-11-08 15:33:59] 2024-11-08 20:33:40,672 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-11-08 15:33:59] 2024-11-08 20:33:40,988 | INFO     | all payload control threads have been joined
[2024-11-08 15:33:59] 2024-11-08 20:33:41,154 | INFO     | all data control threads have been joined
[2024-11-08 15:33:59] 2024-11-08 20:33:41,538 | INFO     | [job] queue monitor thread has finished
[2024-11-08 15:33:59] 2024-11-08 20:33:41,539 | INFO     | [job] retrieve thread has finished
[2024-11-08 15:33:59] 2024-11-08 20:33:41,539 | INFO     | [job] job monitor thread has finished
[2024-11-08 15:33:59] 2024-11-08 20:33:41,593 | INFO     | all job control threads have been joined
[2024-11-08 15:33:59] 2024-11-08 20:33:41,994 | INFO     | [payload] control thread has finished
[2024-11-08 15:33:59] 2024-11-08 20:33:42,026 | INFO     | [payload] validate_post thread has finished
[2024-11-08 15:33:59] 2024-11-08 20:33:42,158 | INFO     | [data] control thread has finished
[2024-11-08 15:33:59] 2024-11-08 20:33:42,250 | INFO     | [data] copytool_in thread has finished
[2024-11-08 15:33:59] 2024-11-08 20:33:42,359 | INFO     | [job] create_data_payload thread has finished
[2024-11-08 15:33:59] 2024-11-08 20:33:42,538 | INFO     | [data] copytool_out thread has finished
[2024-11-08 15:33:59] 2024-11-08 20:33:42,598 | INFO     | [job] control thread has finished
[2024-11-08 15:33:59] 2024-11-08 20:33:42,674 | INFO     | [payload] execute_payloads thread has finished
[2024-11-08 15:33:59] 2024-11-08 20:33:42,833 | INFO     | [job] validate thread has finished
[2024-11-08 15:33:59] 2024-11-08 20:33:42,910 | INFO     | [payload] failed_post thread has finished
[2024-11-08 15:33:59] 2024-11-08 20:33:42,918 | INFO     | [payload] validate_pre thread has finished
[2024-11-08 15:33:59] 2024-11-08 20:33:44,542 | INFO     | [data] queue_monitor thread has finished
[2024-11-08 15:33:59] 2024-11-08 20:33:51,562 | INFO     | job.realtimelogging is not enabled
[2024-11-08 15:33:59] 2024-11-08 20:33:52,566 | INFO     | [payload] run_realtimelog thread has finished
[2024-11-08 15:33:59] 2024-11-08 20:33:53,982 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139621865187136)>', '<ExcThread(monitor, started 139621065291520)>']
[2024-11-08 15:33:59] 2024-11-08 20:33:54,725 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-11-08 15:33:59] 2024-11-08 20:33:54,726 | INFO     | [monitor] control thread has ended
[2024-11-08 15:33:59] 2024-11-08 20:33:59,006 | INFO     | all workflow threads have been joined
[2024-11-08 15:33:59] 2024-11-08 20:33:59,007 | INFO     | end of generic workflow (traces error code: 0)
[2024-11-08 15:33:59] 2024-11-08 20:33:59,007 | INFO     | traces error code: 0
[2024-11-08 15:33:59] 2024-11-08 20:33:59,007 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-11-08 15:33:59] 2024-11-08 20:33:59,193 [wrapper] ==== pilot stdout END ====
[2024-11-08 15:33:59] 2024-11-08 20:33:59,195 [wrapper] ==== wrapper stdout RESUME ====
[2024-11-08 15:33:59] 2024-11-08 20:33:59,198 [wrapper] pilotpid: 3150756
[2024-11-08 15:33:59] 2024-11-08 20:33:59,200 [wrapper] Pilot exit status: 0
[2024-11-08 15:33:59] 2024-11-08 20:33:59,210 [wrapper] pandaids: 6395538570
[2024-11-08 15:33:59] 2024-11-08 20:33:59,269 [wrapper] cleanup supervisor_pilot 3363786 3150757
[2024-11-08 15:33:59] 2024-11-08 20:33:59,271 [wrapper] Test setup, not cleaning
[2024-11-08 15:33:59] 2024-11-08 20:33:59,273 [wrapper] ==== wrapper stdout END ====
[2024-11-08 15:33:59] 2024-11-08 20:33:59,275 [wrapper] ==== wrapper stderr END ====
[2024-11-08 15:33:59] 2024-11-08 20:33:59,279 [wrapper] apfmon messages muted
[2024-11-08 15:33:59]  *** Error codes and diagnostics ***
[2024-11-08 15:33:59]     "exeErrorCode": 0,
[2024-11-08 15:33:59]     "exeErrorDiag": "",
[2024-11-08 15:33:59]     "pilotErrorCode": 0,
[2024-11-08 15:33:59]     "pilotErrorDiag": "",
[2024-11-08 15:33:59]  *** Listing of results directory ***
[2024-11-08 15:33:59] total 467632
[2024-11-08 15:33:59] -rw-r--r-- 1 boinc boinc    486088 Nov  8 08:08 pilot3.tar.gz
[2024-11-08 15:33:59] -rw-r--r-- 1 boinc boinc      5652 Nov  8 08:18 queuedata.json
[2024-11-08 15:33:59] -rwx------ 1 boinc boinc     34589 Nov  8 08:19 runpilot2-wrapper.sh
[2024-11-08 15:33:59] -rw-r--r-- 1 boinc boinc       100 Nov  8 14:14 wrapper_26015_x86_64-pc-linux-gnu
[2024-11-08 15:33:59] -rwxr-xr-x 1 boinc boinc      7986 Nov  8 14:14 run_atlas
[2024-11-08 15:33:59] -rw-r--r-- 1 boinc boinc       105 Nov  8 14:14 job.xml
[2024-11-08 15:33:59] -rw-r--r-- 2 boinc boinc     17569 Nov  8 14:14 start_atlas.sh
[2024-11-08 15:33:59] drwxrwx--x 2 boinc boinc      4096 Nov  8 14:14 shared
[2024-11-08 15:33:59] -rw-r--r-- 2 boinc boinc    499788 Nov  8 14:14 input.tar.gz
[2024-11-08 15:33:59] -rw-r--r-- 1 boinc boinc      7599 Nov  8 14:14 init_data.xml
[2024-11-08 15:33:59] -rw-r--r-- 2 boinc boinc 269494574 Nov  8 14:14 EVNT.41944686._000113.pool.root.1
[2024-11-08 15:33:59] -rw-r--r-- 1 boinc boinc         0 Nov  8 14:14 boinc_lockfile
[2024-11-08 15:33:59] -rw-r--r-- 1 boinc boinc      2627 Nov  8 14:14 pandaJob.out
[2024-11-08 15:33:59] -rw------- 1 boinc boinc       460 Nov  8 14:14 setup.sh.local
[2024-11-08 15:33:59] -rw------- 1 boinc boinc   1010863 Nov  8 14:15 agis_schedconf.cvmfs.json
[2024-11-08 15:33:59] -rw------- 1 boinc boinc   1597102 Nov  8 14:15 agis_ddmendpoints.agis.ALL.json
[2024-11-08 15:33:59] drwx------ 4 boinc boinc      4096 Nov  8 14:15 pilot3
[2024-11-08 15:33:59] -rw------- 1 boinc boinc 203899550 Nov  8 15:32 HITS.41944689._002806.pool.root.1
[2024-11-08 15:33:59] -rw-r--r-- 1 boinc boinc       529 Nov  8 15:32 boinc_task_state.xml
[2024-11-08 15:33:59] -rw------- 1 boinc boinc        95 Nov  8 15:33 pilot_heartbeat.json
[2024-11-08 15:33:59] -rw------- 1 boinc boinc      1027 Nov  8 15:33 memory_monitor_summary.json
[2024-11-08 15:33:59] -rw------- 1 boinc boinc    355545 Nov  8 15:33 log.41944689._002806.job.log.tgz.1
[2024-11-08 15:33:59] -rw------- 1 boinc boinc      7719 Nov  8 15:33 heartbeat.json
[2024-11-08 15:33:59] -rw-r--r-- 1 boinc boinc      8192 Nov  8 15:33 boinc_mmap_file
[2024-11-08 15:33:59] -rw-r--r-- 1 boinc boinc        27 Nov  8 15:33 wrapper_checkpoint.txt
[2024-11-08 15:33:59] -rw------- 1 boinc boinc      4295 Nov  8 15:33 pilotlog.txt
[2024-11-08 15:33:59] -rw------- 1 boinc boinc    457389 Nov  8 15:33 log.41944689._002806.job.log.1
[2024-11-08 15:33:59] -rw------- 1 boinc boinc       357 Nov  8 15:33 output.list
[2024-11-08 15:33:59] -rw-r--r-- 1 boinc boinc       620 Nov  8 15:33 runtime_log
[2024-11-08 15:33:59] -rw------- 1 boinc boinc    829440 Nov  8 15:33 result.tar.gz
[2024-11-08 15:33:59] -rw------- 1 boinc boinc       650 Nov  8 15:33 XfpKDms4dT6n9Rq4apOajLDm4fhM0noT9bVorHsSDm2P7LDmnT7NXn.diag
[2024-11-08 15:33:59] -rw-r--r-- 1 boinc boinc     11473 Nov  8 15:33 runtime_log.err
[2024-11-08 15:33:59] -rw-r--r-- 1 boinc boinc     20853 Nov  8 15:33 stderr.txt
[2024-11-08 15:33:59] HITS file was successfully produced:
[2024-11-08 15:33:59] -rw------- 1 boinc boinc 203899550 Nov  8 15:32 shared/HITS.pool.root.1
[2024-11-08 15:33:59]  *** Contents of shared directory: ***
[2024-11-08 15:33:59] total 463636
[2024-11-08 15:33:59] -rw-r--r-- 2 boinc boinc     17569 Nov  8 14:14 start_atlas.sh
[2024-11-08 15:33:59] -rw-r--r-- 2 boinc boinc    499788 Nov  8 14:14 input.tar.gz
[2024-11-08 15:33:59] -rw-r--r-- 2 boinc boinc 269494574 Nov  8 14:14 ATLAS.root_0
[2024-11-08 15:33:59] -rw------- 1 boinc boinc 203899550 Nov  8 15:32 HITS.pool.root.1
[2024-11-08 15:33:59] -rw------- 1 boinc boinc    829440 Nov  8 15:33 result.tar.gz
15:34:00 (3146627): run_atlas exited; CPU time 46065.163355
15:34:00 (3146627): called boinc_finish(0)

</stderr_txt>
]]>

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