Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
12:58:52 (2945726): wrapper (7.7.26015): starting
12:58:52 (2945726): wrapper: running run_atlas (--nthreads 12)
[2024-11-08 12:58:52] Arguments: --nthreads 12
[2024-11-08 12:58:52] Threads: 12
[2024-11-08 12:58:52] Checking for CVMFS
[2024-11-08 12:58:53] Probing /cvmfs/atlas.cern.ch... OK
[2024-11-08 12:58:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-11-08 12:58:53] Running cvmfs_config stat atlas.cern.ch
[2024-11-08 12:58:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-11-08 12:58:53] 2.11.5.0 2308668 195 53620 139249 1 186 3166251 4194304 844 130560 0 523608 97.196 1661569 3742 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.150.1:3128 1
[2024-11-08 12:58:53] CVMFS is ok
[2024-11-08 12:58:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-11-08 12:58:53] Checking for apptainer binary...
[2024-11-08 12:58:53] apptainer is not installed, using version from CVMFS
[2024-11-08 12:58:53] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-11-08 12:58:53] Trebeth
[2024-11-08 12:58:53] apptainer works
[2024-11-08 12:58:53] Set ATHENA_PROC_NUMBER=12
[2024-11-08 12:58:53] Set ATHENA_CORE_NUMBER=12
[2024-11-08 12:58:53] Starting ATLAS job with PandaID=6395538434
[2024-11-08 12:58:53] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-11-08 14:18:29]  *** The last 200 lines of the pilot log: ***
[2024-11-08 14:18:29]  direct_access_wan=False
[2024-11-08 14:18:29]  domain=
[2024-11-08 14:18:29]  filesize=373723
[2024-11-08 14:18:29]  filetype=log
[2024-11-08 14:18:29]  guid=f12f0562-fe1d-449a-af37-cbd1afa07cce
[2024-11-08 14:18:29]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-11-08 14:18:29]  is_altstaged=None
[2024-11-08 14:18:29]  is_tar=False
[2024-11-08 14:18:29]  lfn=log.41944689._002670.job.log.tgz.1
[2024-11-08 14:18:29]  mtime=0
[2024-11-08 14:18:29]  protocol_id=None
[2024-11-08 14:18:29]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-11-08 14:18:29]  replicas=None
[2024-11-08 14:18:29]  scope=mc23_13p6TeV
[2024-11-08 14:18:29]  status=None
[2024-11-08 14:18:29]  status_code=0
[2024-11-08 14:18:29]  storage_token=
[2024-11-08 14:18:29]  surl=/var/lib/boinc-client/slots/2/PanDA_Pilot-6395538434/log.41944689._002670.job.log.tgz.1
[2024-11-08 14:18:29]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ba/3b/log.41944689._002670.job.log.tgz.1
[2024-11-08 14:18:29]  workdir=None
[2024-11-08 14:18:29] ]
[2024-11-08 14:18:29] 2024-11-08 19:18:04,568 | INFO     | transferring file log.41944689._002670.job.log.tgz.1 from /var/lib/boinc-client/slots/2/PanDA_Pilot-6395538434/log.41944689._002670.job.log.tgz.1 to /var/lib/boinc
[2024-11-08 14:18:29] 2024-11-08 19:18:04,568 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/2/PanDA_Pilot-6395538434/log.41944689._002670.job.log.tgz.1 /var/lib/boinc-client/slots/2/log.419446
[2024-11-08 14:18:29] 2024-11-08 19:18:04,586 | INFO     | adding to output.list: log.41944689._002670.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ba/3b/log.41944689._002670.job.log.tg
[2024-11-08 14:18:29] 2024-11-08 19:18:04,588 | INFO     | alt stage-out settings: ['pl', 'pw', 'w', 'default'], is_unified=False, altstageout=False, remain_files=0, has_altstorage=True
[2024-11-08 14:18:29] 2024-11-08 19:18:04,588 | INFO     | summary of transferred files:
[2024-11-08 14:18:29] 2024-11-08 19:18:04,589 | INFO     |  -- lfn=log.41944689._002670.job.log.tgz.1, status_code=0, status=transferred
[2024-11-08 14:18:29] 2024-11-08 19:18:04,589 | INFO     | stage-out finished correctly
[2024-11-08 14:18:29] 2024-11-08 19:18:07,718 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-11-08 14:18:29] 2024-11-08 19:18:08,784 | WARNING  | process 2957721 is no longer using CPU - aborting
[2024-11-08 14:18:29] 2024-11-08 19:18:09,122 | INFO     | job 6395538434 has state=finished
[2024-11-08 14:18:29] 2024-11-08 19:18:09,122 | INFO     | preparing for final server update for job 6395538434 in state='finished'
[2024-11-08 14:18:29] 2024-11-08 19:18:09,123 | INFO     | this job has now completed (state=finished)
[2024-11-08 14:18:29] 2024-11-08 19:18:09,123 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-11-08 14:18:29] 2024-11-08 19:18:09,123 | INFO     | log transfer has been attempted: DONE
[2024-11-08 14:18:29] 2024-11-08 19:18:09,124 | INFO     | job 6395538434 has finished - writing final server update
[2024-11-08 14:18:29] 2024-11-08 19:18:09,124 | INFO     | total number of processed events: 400 (read)
[2024-11-08 14:18:29] 2024-11-08 19:18:09,150 | INFO     | executing command: lscpu
[2024-11-08 14:18:29] 2024-11-08 19:18:09,215 | INFO     | found 28 cores (14 cores per socket, 2 sockets)
[2024-11-08 14:18:29] 2024-11-08 19:18:09,253 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-11-08 14:18:29] 2024-11-08 19:18:11,286 | INFO     | monitor loop #369: job 0:6395538434 is in state 'finished'
[2024-11-08 14:18:29] 2024-11-08 19:18:11,286 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-11-08 14:18:29] 2024-11-08 19:18:12,910 | INFO     | CPU arch script returned: x86-64-v3
[2024-11-08 14:18:29] 2024-11-08 19:18:12,910 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-6395538434/memory_monitor_summary.json (trf name=prmon)
[2024-11-08 14:18:29] 2024-11-08 19:18:12,911 | INFO     | extracted standard info from prmon json
[2024-11-08 14:18:29] 2024-11-08 19:18:12,911 | INFO     | extracted standard memory fields from prmon json
[2024-11-08 14:18:29] 2024-11-08 19:18:12,911 | WARNING  | GPU info not found in prmon json: 'gpu'
[2024-11-08 14:18:29] 2024-11-08 19:18:12,912 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-11-08 14:18:29] 2024-11-08 19:18:12,912 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-11-08 14:18:29] 2024-11-08 19:18:12,913 | INFO     | fitting pss+swap vs Time
[2024-11-08 14:18:29] 2024-11-08 19:18:12,913 | INFO     | model: linear, x: [1731089078.0, 1731089139.0, 1731089200.0, 1731089261.0, 1731089322.0, 1731089383.0, 1731089444.0, 1731089505.0, 1731089566.0, 1731089627.0, 1731
[2024-11-08 14:18:29] 2024-11-08 19:18:12,913 | INFO     | sum of square deviations: 110960220.0
[2024-11-08 14:18:29] 2024-11-08 19:18:12,914 | INFO     | sum of deviations: 955550237.9999996
[2024-11-08 14:18:29] 2024-11-08 19:18:12,914 | INFO     | mean x: 1731091213.0
[2024-11-08 14:18:29] 2024-11-08 19:18:12,914 | INFO     | mean y: 2734690.0422535213
[2024-11-08 14:18:29] 2024-11-08 19:18:12,914 | INFO     | -- intersect: -14904811641.26331
[2024-11-08 14:18:29] 2024-11-08 19:18:12,914 | INFO     | intersect: -14904811641.26331
[2024-11-08 14:18:29] 2024-11-08 19:18:12,914 | INFO     | chi2: 0.10110368073933544
[2024-11-08 14:18:29] 2024-11-08 19:18:12,914 | INFO     | -- intersect: -14904811641.26331
[2024-11-08 14:18:29] 2024-11-08 19:18:12,914 | INFO     | current memory leak: 8.61 B/s (using 71 data points, chi2=0.10)
[2024-11-08 14:18:29] 2024-11-08 19:18:12,915 | INFO     | ..............................
[2024-11-08 14:18:29] 2024-11-08 19:18:12,915 | INFO     | . Timing measurements:
[2024-11-08 14:18:29] 2024-11-08 19:18:12,915 | INFO     | . get job = 0 s
[2024-11-08 14:18:29] 2024-11-08 19:18:12,915 | INFO     | . initial setup = 7 s
[2024-11-08 14:18:29] 2024-11-08 19:18:12,915 | INFO     | . payload setup = 5 s
[2024-11-08 14:18:29] 2024-11-08 19:18:12,915 | INFO     | . stage-in = 0 s
[2024-11-08 14:18:29] 2024-11-08 19:18:12,915 | INFO     | . payload execution = 4711 s
[2024-11-08 14:18:29] 2024-11-08 19:18:12,915 | INFO     | . stage-out = 0 s
[2024-11-08 14:18:29] 2024-11-08 19:18:12,915 | INFO     | . log creation = 0 s
[2024-11-08 14:18:29] 2024-11-08 19:18:12,915 | INFO     | ..............................
[2024-11-08 14:18:29] 2024-11-08 19:18:13,132 | INFO     | 
[2024-11-08 14:18:29] 2024-11-08 19:18:13,133 | INFO     | job summary report
[2024-11-08 14:18:29] 2024-11-08 19:18:13,133 | INFO     | --------------------------------------------------
[2024-11-08 14:18:29] 2024-11-08 19:18:13,133 | INFO     | PanDA job id: 6395538434
[2024-11-08 14:18:29] 2024-11-08 19:18:13,133 | INFO     | task id: 41944689
[2024-11-08 14:18:29] 2024-11-08 19:18:13,133 | INFO     | errors: (none)
[2024-11-08 14:18:29] 2024-11-08 19:18:13,133 | INFO     | status: LOG_TRANSFER = DONE 
[2024-11-08 14:18:29] 2024-11-08 19:18:13,134 | INFO     | pilot state: finished 
[2024-11-08 14:18:29] 2024-11-08 19:18:13,134 | INFO     | transexitcode: 0
[2024-11-08 14:18:29] 2024-11-08 19:18:13,134 | INFO     | exeerrorcode: 0
[2024-11-08 14:18:29] 2024-11-08 19:18:13,134 | INFO     | exeerrordiag: 
[2024-11-08 14:18:29] 2024-11-08 19:18:13,134 | INFO     | exitcode: 0
[2024-11-08 14:18:29] 2024-11-08 19:18:13,134 | INFO     | exitmsg: OK
[2024-11-08 14:18:29] 2024-11-08 19:18:13,134 | INFO     | cpuconsumptiontime: 47886 s
[2024-11-08 14:18:29] 2024-11-08 19:18:13,134 | INFO     | nevents: 400
[2024-11-08 14:18:29] 2024-11-08 19:18:13,134 | INFO     | neventsw: 0
[2024-11-08 14:18:29] 2024-11-08 19:18:13,134 | INFO     | pid: 2957721
[2024-11-08 14:18:29] 2024-11-08 19:18:13,135 | INFO     | pgrp: 2957721
[2024-11-08 14:18:29] 2024-11-08 19:18:13,135 | INFO     | corecount: 12
[2024-11-08 14:18:29] 2024-11-08 19:18:13,135 | INFO     | event service: False
[2024-11-08 14:18:29] 2024-11-08 19:18:13,135 | INFO     | sizes: {0: 2404449, 4: 2404655, 11: 2404683, 4719: 2430842, 4720: 2439935, 4724: 2439935, 4729: 2440233}
[2024-11-08 14:18:29] 2024-11-08 19:18:13,135 | INFO     | --------------------------------------------------
[2024-11-08 14:18:29] 2024-11-08 19:18:13,135 | INFO     | 
[2024-11-08 14:18:29] 2024-11-08 19:18:13,135 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/2
[2024-11-08 14:18:29] 2024-11-08 19:18:13,154 | INFO     | queue jobs had 0 job(s) [purged]
[2024-11-08 14:18:29] 2024-11-08 19:18:13,154 | INFO     | queue payloads had 0 job(s) [purged]
[2024-11-08 14:18:29] 2024-11-08 19:18:13,154 | INFO     | queue data_in had 0 job(s) [purged]
[2024-11-08 14:18:29] 2024-11-08 19:18:13,154 | INFO     | queue data_out had 0 job(s) [purged]
[2024-11-08 14:18:29] 2024-11-08 19:18:13,154 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-11-08 14:18:29] 2024-11-08 19:18:13,154 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-11-08 14:18:29] 2024-11-08 19:18:13,154 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-11-08 14:18:29] 2024-11-08 19:18:13,155 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-11-08 14:18:29] 2024-11-08 19:18:13,155 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-11-08 14:18:29] 2024-11-08 19:18:13,155 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-11-08 14:18:29] 2024-11-08 19:18:13,155 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-11-08 14:18:29] 2024-11-08 19:18:13,155 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-11-08 14:18:29] 2024-11-08 19:18:13,155 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-11-08 14:18:29] 2024-11-08 19:18:13,155 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-11-08 14:18:29] 2024-11-08 19:18:13,155 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-11-08 14:18:29] 2024-11-08 19:18:13,155 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-11-08 14:18:29] 2024-11-08 19:18:13,155 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-11-08 14:18:29] 2024-11-08 19:18:13,156 | INFO     | queue completed_jobids has 1 job(s)
[2024-11-08 14:18:29] 2024-11-08 19:18:13,156 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-11-08 14:18:29] 2024-11-08 19:18:13,156 | INFO     | queue messages had 0 job(s) [purged]
[2024-11-08 14:18:29] 2024-11-08 19:18:13,156 | INFO     | job 6395538434 has completed (purged errors)
[2024-11-08 14:18:29] 2024-11-08 19:18:13,156 | INFO     | overall cleanup function is called
[2024-11-08 14:18:29] 2024-11-08 19:18:14,165 | INFO     | --- collectZombieJob: --- 10, [2957721]
[2024-11-08 14:18:29] 2024-11-08 19:18:14,165 | INFO     | zombie collector waiting for pid 2957721
[2024-11-08 14:18:29] 2024-11-08 19:18:14,166 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-11-08 14:18:29] 2024-11-08 19:18:14,166 | INFO     | collected zombie processes
[2024-11-08 14:18:29] 2024-11-08 19:18:14,166 | INFO     | will attempt to kill all subprocesses of pid=2957721
[2024-11-08 14:18:29] 2024-11-08 19:18:14,264 | INFO     | process IDs to be killed: [2957721] (in reverse order)
[2024-11-08 14:18:29] 2024-11-08 19:18:14,389 | WARNING  | found no corresponding commands to process id(s)
[2024-11-08 14:18:29] 2024-11-08 19:18:14,390 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-11-08 14:18:29] 2024-11-08 19:18:14,400 | INFO     | did not find any defunct processes belonging to 2957721
[2024-11-08 14:18:29] 2024-11-08 19:18:14,410 | INFO     | did not find any defunct processes belonging to 2957721
[2024-11-08 14:18:29] 2024-11-08 19:18:14,410 | INFO     | ready for new job
[2024-11-08 14:18:29] 2024-11-08 19:18:14,410 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-11-08 14:18:29] 2024-11-08 19:18:14,413 | INFO     | **************************************
[2024-11-08 14:18:29] 2024-11-08 19:18:14,413 | INFO     | ***  PanDA Pilot version 3.9.1.13  ***
[2024-11-08 14:18:29] 2024-11-08 19:18:14,413 | INFO     | **************************************
[2024-11-08 14:18:29] 2024-11-08 19:18:14,413 | INFO     | 
[2024-11-08 14:18:29] 2024-11-08 19:18:14,433 | INFO     | architecture information:
[2024-11-08 14:18:29] 2024-11-08 19:18:14,434 | INFO     | executing command: cat /etc/os-release
[2024-11-08 14:18:29] 2024-11-08 19:18:14,448 | INFO     | cat /etc/os-release:
[2024-11-08 14:18:29] NAME="CentOS Linux"
[2024-11-08 14:18:29] VERSION="7 (Core)"
[2024-11-08 14:18:29] ID="centos"
[2024-11-08 14:18:29] ID_LIKE="rhel fedora"
[2024-11-08 14:18:29] VERSION_ID="7"
[2024-11-08 14:18:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-11-08 14:18:29] ANSI_COLOR="0;31"
[2024-11-08 14:18:29] CPE_NAME="cpe:/o:centos:centos:7"
[2024-11-08 14:18:29] HOME_URL="https://www.centos.org/"
[2024-11-08 14:18:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-11-08 14:18:29] 
[2024-11-08 14:18:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-11-08 14:18:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-11-08 14:18:29] REDHAT_SUPPORT_PRODUCT="centos"
[2024-11-08 14:18:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-11-08 14:18:29] 
[2024-11-08 14:18:29] 2024-11-08 19:18:14,448 | INFO     | **************************************
[2024-11-08 14:18:29] 2024-11-08 19:18:14,950 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/2
[2024-11-08 14:18:29] 2024-11-08 19:18:14,969 | INFO     | sufficient remaining disk space (399431958528 B)
[2024-11-08 14:18:29] 2024-11-08 19:18:14,970 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-11-08 14:18:29] 2024-11-08 19:18:14,970 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-11-08 14:18:29] 2024-11-08 19:18:14,970 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-11-08 14:18:29] 2024-11-08 19:18:14,971 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-11-08 14:18:29] 2024-11-08 19:18:14,971 | INFO     | aborting loop
[2024-11-08 14:18:29] 2024-11-08 19:18:14,974 | INFO     | found 0 job(s) in 20 queues
[2024-11-08 14:18:29] 2024-11-08 19:18:14,974 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-11-08 14:18:29] 2024-11-08 19:18:14,975 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-11-08 14:18:29] 2024-11-08 19:18:15,080 | INFO     | all job control threads have been joined
[2024-11-08 14:18:29] 2024-11-08 19:18:15,177 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-11-08 14:18:29] 2024-11-08 19:18:15,369 | INFO     | all payload control threads have been joined
[2024-11-08 14:18:29] 2024-11-08 19:18:15,686 | INFO     | all data control threads have been joined
[2024-11-08 14:18:29] 2024-11-08 19:18:15,974 | INFO     | [job] retrieve thread has finished
[2024-11-08 14:18:29] 2024-11-08 19:18:15,974 | INFO     | [job] queue monitor thread has finished
[2024-11-08 14:18:29] 2024-11-08 19:18:15,975 | INFO     | [job] job monitor thread has finished
[2024-11-08 14:18:29] 2024-11-08 19:18:16,082 | INFO     | [job] validate thread has finished
[2024-11-08 14:18:29] 2024-11-08 19:18:16,086 | INFO     | [job] control thread has finished
[2024-11-08 14:18:29] 2024-11-08 19:18:16,374 | INFO     | [payload] control thread has finished
[2024-11-08 14:18:29] 2024-11-08 19:18:16,406 | INFO     | [data] copytool_in thread has finished
[2024-11-08 14:18:29] 2024-11-08 19:18:16,692 | INFO     | [data] control thread has finished
[2024-11-08 14:18:29] 2024-11-08 19:18:16,734 | INFO     | [payload] execute_payloads thread has finished
[2024-11-08 14:18:29] 2024-11-08 19:18:16,802 | INFO     | [payload] failed_post thread has finished
[2024-11-08 14:18:29] 2024-11-08 19:18:17,032 | INFO     | [payload] run_realtimelog thread has finished
[2024-11-08 14:18:29] 2024-11-08 19:18:17,087 | INFO     | [payload] validate_pre thread has finished
[2024-11-08 14:18:29] 2024-11-08 19:18:17,090 | INFO     | [job] create_data_payload thread has finished
[2024-11-08 14:18:29] 2024-11-08 19:18:17,182 | INFO     | [data] copytool_out thread has finished
[2024-11-08 14:18:29] 2024-11-08 19:18:17,562 | INFO     | [payload] validate_post thread has finished
[2024-11-08 14:18:29] 2024-11-08 19:18:18,308 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-11-08 14:18:29] 2024-11-08 19:18:22,314 | INFO     | [data] queue_monitor thread has finished
[2024-11-08 14:18:29] 2024-11-08 19:18:24,214 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140181909129024)>', '<ExcThread(monitor, started 140181466236672)>']
[2024-11-08 14:18:29] 2024-11-08 19:18:25,010 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-11-08 14:18:29] 2024-11-08 19:18:25,010 | INFO     | [monitor] control thread has ended
[2024-11-08 14:18:29] 2024-11-08 19:18:29,238 | INFO     | all workflow threads have been joined
[2024-11-08 14:18:29] 2024-11-08 19:18:29,238 | INFO     | end of generic workflow (traces error code: 0)
[2024-11-08 14:18:29] 2024-11-08 19:18:29,238 | INFO     | traces error code: 0
[2024-11-08 14:18:29] 2024-11-08 19:18:29,238 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-11-08 14:18:29] 2024-11-08 19:18:29,385 [wrapper] ==== pilot stdout END ====
[2024-11-08 14:18:29] 2024-11-08 19:18:29,387 [wrapper] ==== wrapper stdout RESUME ====
[2024-11-08 14:18:29] 2024-11-08 19:18:29,389 [wrapper] pilotpid: 2949867
[2024-11-08 14:18:29] 2024-11-08 19:18:29,391 [wrapper] Pilot exit status: 0
[2024-11-08 14:18:29] 2024-11-08 19:18:29,399 [wrapper] pandaids: 6395538434
[2024-11-08 14:18:29] 2024-11-08 19:18:29,443 [wrapper] cleanup supervisor_pilot 3141915 2949868
[2024-11-08 14:18:29] 2024-11-08 19:18:29,446 [wrapper] Test setup, not cleaning
[2024-11-08 14:18:29] 2024-11-08 19:18:29,448 [wrapper] ==== wrapper stdout END ====
[2024-11-08 14:18:29] 2024-11-08 19:18:29,451 [wrapper] ==== wrapper stderr END ====
[2024-11-08 14:18:29] 2024-11-08 19:18:29,456 [wrapper] apfmon messages muted
[2024-11-08 14:18:29]  *** Error codes and diagnostics ***
[2024-11-08 14:18:29]     "exeErrorCode": 0,
[2024-11-08 14:18:29]     "exeErrorDiag": "",
[2024-11-08 14:18:29]     "pilotErrorCode": 0,
[2024-11-08 14:18:29]     "pilotErrorDiag": "",
[2024-11-08 14:18:29]  *** Listing of results directory ***
[2024-11-08 14:18:29] total 473196
[2024-11-08 14:18:29] -rw-r--r-- 1 boinc boinc    486088 Nov  8 08:08 pilot3.tar.gz
[2024-11-08 14:18:29] -rw-r--r-- 1 boinc boinc      5652 Nov  8 08:18 queuedata.json
[2024-11-08 14:18:29] -rwx------ 1 boinc boinc     34589 Nov  8 08:19 runpilot2-wrapper.sh
[2024-11-08 14:18:29] -rw-r--r-- 1 boinc boinc       100 Nov  8 12:58 wrapper_26015_x86_64-pc-linux-gnu
[2024-11-08 14:18:29] -rwxr-xr-x 1 boinc boinc      7986 Nov  8 12:58 run_atlas
[2024-11-08 14:18:29] -rw-r--r-- 1 boinc boinc       105 Nov  8 12:58 job.xml
[2024-11-08 14:18:29] -rw-r--r-- 2 boinc boinc     17569 Nov  8 12:58 start_atlas.sh
[2024-11-08 14:18:29] drwxrwx--x 2 boinc boinc      4096 Nov  8 12:58 shared
[2024-11-08 14:18:29] -rw-r--r-- 2 boinc boinc    499786 Nov  8 12:58 input.tar.gz
[2024-11-08 14:18:29] -rw-r--r-- 1 boinc boinc      7599 Nov  8 12:58 init_data.xml
[2024-11-08 14:18:29] -rw-r--r-- 2 boinc boinc 266744082 Nov  8 12:58 EVNT.41944686._000107.pool.root.1
[2024-11-08 14:18:29] -rw-r--r-- 1 boinc boinc         0 Nov  8 12:58 boinc_lockfile
[2024-11-08 14:18:29] -rw-r--r-- 1 boinc boinc      2627 Nov  8 12:58 pandaJob.out
[2024-11-08 14:18:29] -rw------- 1 boinc boinc       460 Nov  8 12:58 setup.sh.local
[2024-11-08 14:18:29] -rw------- 1 boinc boinc   1011219 Nov  8 12:59 agis_schedconf.cvmfs.json
[2024-11-08 14:18:29] -rw------- 1 boinc boinc   1597102 Nov  8 12:59 agis_ddmendpoints.agis.ALL.json
[2024-11-08 14:18:29] drwx------ 4 boinc boinc      4096 Nov  8 12:59 pilot3
[2024-11-08 14:18:29] -rw------- 1 boinc boinc 212295087 Nov  8 14:17 HITS.41944689._002670.pool.root.1
[2024-11-08 14:18:29] -rw-r--r-- 1 boinc boinc       529 Nov  8 14:17 boinc_task_state.xml
[2024-11-08 14:18:29] -rw------- 1 boinc boinc      1029 Nov  8 14:18 memory_monitor_summary.json
[2024-11-08 14:18:29] -rw------- 1 boinc boinc    373723 Nov  8 14:18 log.41944689._002670.job.log.tgz.1
[2024-11-08 14:18:29] -rw------- 1 boinc boinc      7722 Nov  8 14:18 heartbeat.json
[2024-11-08 14:18:29] -rw------- 1 boinc boinc        95 Nov  8 14:18 pilot_heartbeat.json
[2024-11-08 14:18:29] -rw-r--r-- 1 boinc boinc        27 Nov  8 14:18 wrapper_checkpoint.txt
[2024-11-08 14:18:29] -rw-r--r-- 1 boinc boinc      8192 Nov  8 14:18 boinc_mmap_file
[2024-11-08 14:18:29] -rw------- 1 boinc boinc      4223 Nov  8 14:18 pilotlog.txt
[2024-11-08 14:18:29] -rw------- 1 boinc boinc    462628 Nov  8 14:18 log.41944689._002670.job.log.1
[2024-11-08 14:18:29] -rw------- 1 boinc boinc       357 Nov  8 14:18 output.list
[2024-11-08 14:18:29] -rw-r--r-- 1 boinc boinc       620 Nov  8 14:18 runtime_log
[2024-11-08 14:18:29] -rw------- 1 boinc boinc    860160 Nov  8 14:18 result.tar.gz
[2024-11-08 14:18:29] -rw-r--r-- 1 boinc boinc     11473 Nov  8 14:18 runtime_log.err
[2024-11-08 14:18:29] -rw------- 1 boinc boinc       651 Nov  8 14:18 HQZMDmc4dT6n7OlckoGmwREmGgkVDo1bjSoqOlfODmI1nLDmsLHhpm.diag
[2024-11-08 14:18:29] -rw-r--r-- 1 boinc boinc     20825 Nov  8 14:18 stderr.txt
[2024-11-08 14:18:29] HITS file was successfully produced:
[2024-11-08 14:18:29] -rw------- 1 boinc boinc 212295087 Nov  8 14:17 shared/HITS.pool.root.1
[2024-11-08 14:18:29]  *** Contents of shared directory: ***
[2024-11-08 14:18:29] total 469176
[2024-11-08 14:18:29] -rw-r--r-- 2 boinc boinc     17569 Nov  8 12:58 start_atlas.sh
[2024-11-08 14:18:29] -rw-r--r-- 2 boinc boinc    499786 Nov  8 12:58 input.tar.gz
[2024-11-08 14:18:29] -rw-r--r-- 2 boinc boinc 266744082 Nov  8 12:58 ATLAS.root_0
[2024-11-08 14:18:29] -rw------- 1 boinc boinc 212295087 Nov  8 14:17 HITS.pool.root.1
[2024-11-08 14:18:29] -rw------- 1 boinc boinc    860160 Nov  8 14:18 result.tar.gz
14:18:31 (2945726): run_atlas exited; CPU time 47722.773288
14:18:31 (2945726): called boinc_finish(0)

</stderr_txt>
]]>

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