Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
11:42:20 (2722039): wrapper (7.7.26015): starting
11:42:20 (2722039): wrapper: running run_atlas (--nthreads 12)
[2024-11-08 11:42:20] Arguments: --nthreads 12
[2024-11-08 11:42:20] Threads: 12
[2024-11-08 11:42:20] Checking for CVMFS
[2024-11-08 11:42:20] Probing /cvmfs/atlas.cern.ch... OK
[2024-11-08 11:42:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-11-08 11:42:20] Running cvmfs_config stat atlas.cern.ch
[2024-11-08 11:42:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-11-08 11:42:20] 2.11.5.0 2308668 118 52516 139247 1 186 2537123 4194295 666 130560 0 348092 97.018 1395601 3200 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.150.1:3128 1
[2024-11-08 11:42:20] CVMFS is ok
[2024-11-08 11:42:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-11-08 11:42:20] Checking for apptainer binary...
[2024-11-08 11:42:20] apptainer is not installed, using version from CVMFS
[2024-11-08 11:42:20] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-11-08 11:42:20] Trebeth
[2024-11-08 11:42:20] apptainer works
[2024-11-08 11:42:20] Set ATHENA_PROC_NUMBER=12
[2024-11-08 11:42:20] Set ATHENA_CORE_NUMBER=12
[2024-11-08 11:42:20] Starting ATLAS job with PandaID=6395635662
[2024-11-08 11:42:20] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-11-08 12:56:49]  *** The last 200 lines of the pilot log: ***
[2024-11-08 12:56:49]  guid=d20b2b53-f59c-4def-9ef9-5055f34e65f7
[2024-11-08 12:56:49]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-11-08 12:56:49]  is_altstaged=None
[2024-11-08 12:56:49]  is_tar=False
[2024-11-08 12:56:49]  lfn=log.41944181._001046.job.log.tgz.1
[2024-11-08 12:56:49]  mtime=0
[2024-11-08 12:56:49]  protocol_id=None
[2024-11-08 12:56:49]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-11-08 12:56:49]  replicas=None
[2024-11-08 12:56:49]  scope=mc23_13p6TeV
[2024-11-08 12:56:49]  status=None
[2024-11-08 12:56:49]  status_code=0
[2024-11-08 12:56:49]  storage_token=
[2024-11-08 12:56:49]  surl=/var/lib/boinc-client/slots/0/PanDA_Pilot-6395635662/log.41944181._001046.job.log.tgz.1
[2024-11-08 12:56:49]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3d/d2/log.41944181._001046.job.log.tgz.1
[2024-11-08 12:56:49]  workdir=None
[2024-11-08 12:56:49] ]
[2024-11-08 12:56:49] 2024-11-08 17:56:23,710 | INFO     | transferring file log.41944181._001046.job.log.tgz.1 from /var/lib/boinc-client/slots/0/PanDA_Pilot-6395635662/log.41944181._001046.job.log.tgz.1 to /var/lib/boinc
[2024-11-08 12:56:49] 2024-11-08 17:56:23,710 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/0/PanDA_Pilot-6395635662/log.41944181._001046.job.log.tgz.1 /var/lib/boinc-client/slots/0/log.419441
[2024-11-08 12:56:49] 2024-11-08 17:56:23,731 | INFO     | adding to output.list: log.41944181._001046.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3d/d2/log.41944181._001046.job.log.tg
[2024-11-08 12:56:49] 2024-11-08 17:56:23,733 | INFO     | alt stage-out settings: ['pl', 'pw', 'w', 'default'], is_unified=False, altstageout=False, remain_files=0, has_altstorage=True
[2024-11-08 12:56:49] 2024-11-08 17:56:23,733 | INFO     | summary of transferred files:
[2024-11-08 12:56:49] 2024-11-08 17:56:23,733 | INFO     |  -- lfn=log.41944181._001046.job.log.tgz.1, status_code=0, status=transferred
[2024-11-08 12:56:49] 2024-11-08 17:56:23,733 | INFO     | stage-out finished correctly
[2024-11-08 12:56:49] 2024-11-08 17:56:24,028 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-11-08 12:56:49] 2024-11-08 17:56:24,081 | INFO     | job 6395635662 has state=finished
[2024-11-08 12:56:49] 2024-11-08 17:56:24,082 | INFO     | preparing for final server update for job 6395635662 in state='finished'
[2024-11-08 12:56:49] 2024-11-08 17:56:24,082 | INFO     | this job has now completed (state=finished)
[2024-11-08 12:56:49] 2024-11-08 17:56:24,082 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-11-08 12:56:49] 2024-11-08 17:56:24,083 | INFO     | log transfer has been attempted: DONE
[2024-11-08 12:56:49] 2024-11-08 17:56:24,083 | INFO     | job 6395635662 has finished - writing final server update
[2024-11-08 12:56:49] 2024-11-08 17:56:24,083 | INFO     | total number of processed events: 400 (read)
[2024-11-08 12:56:49] 2024-11-08 17:56:24,105 | INFO     | executing command: lscpu
[2024-11-08 12:56:49] 2024-11-08 17:56:24,169 | INFO     | found 28 cores (14 cores per socket, 2 sockets)
[2024-11-08 12:56:49] 2024-11-08 17:56:24,186 | INFO     | monitor loop #345: job 0:6395635662 is in state 'finished'
[2024-11-08 12:56:49] 2024-11-08 17:56:24,186 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-11-08 12:56:49] 2024-11-08 17:56:24,214 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-11-08 12:56:49] 2024-11-08 17:56:26,690 | INFO     | monitor loop #346: job 0:6395635662 is in state 'finished'
[2024-11-08 12:56:49] 2024-11-08 17:56:26,690 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-11-08 12:56:49] 2024-11-08 17:56:29,193 | INFO     | monitor loop #347: job 0:6395635662 is in state 'finished'
[2024-11-08 12:56:49] 2024-11-08 17:56:29,194 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-11-08 12:56:49] 2024-11-08 17:56:30,291 | INFO     | CPU arch script returned: x86-64-v3
[2024-11-08 12:56:49] 2024-11-08 17:56:30,291 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6395635662/memory_monitor_summary.json (trf name=prmon)
[2024-11-08 12:56:49] 2024-11-08 17:56:30,292 | INFO     | extracted standard info from prmon json
[2024-11-08 12:56:49] 2024-11-08 17:56:30,293 | INFO     | extracted standard memory fields from prmon json
[2024-11-08 12:56:49] 2024-11-08 17:56:30,293 | WARNING  | GPU info not found in prmon json: 'gpu'
[2024-11-08 12:56:49] 2024-11-08 17:56:30,293 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-11-08 12:56:49] 2024-11-08 17:56:30,293 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-11-08 12:56:49] 2024-11-08 17:56:30,295 | INFO     | fitting pss+swap vs Time
[2024-11-08 12:56:49] 2024-11-08 17:56:30,296 | INFO     | model: linear, x: [1731084485.0, 1731084546.0, 1731084607.0, 1731084668.0, 1731084729.0, 1731084790.0, 1731084851.0, 1731084912.0, 1731084973.0, 1731085034.0, 1731
[2024-11-08 12:56:49] 2024-11-08 17:56:30,296 | INFO     | sum of square deviations: 89127252.5
[2024-11-08 12:56:49] 2024-11-08 17:56:30,296 | INFO     | sum of deviations: 625702528.5
[2024-11-08 12:56:49] 2024-11-08 17:56:30,296 | INFO     | mean x: 1731086467.5
[2024-11-08 12:56:49] 2024-11-08 17:56:30,296 | INFO     | mean y: 2737268.772727273
[2024-11-08 12:56:49] 2024-11-08 17:56:30,297 | INFO     | -- intersect: -12150057183.93278
[2024-11-08 12:56:49] 2024-11-08 17:56:30,297 | INFO     | intersect: -12150057183.93278
[2024-11-08 12:56:49] 2024-11-08 17:56:30,297 | INFO     | chi2: 0.2239046181485389
[2024-11-08 12:56:49] 2024-11-08 17:56:30,297 | INFO     | -- intersect: -12150057183.93278
[2024-11-08 12:56:49] 2024-11-08 17:56:30,297 | INFO     | current memory leak: 7.02 B/s (using 66 data points, chi2=0.22)
[2024-11-08 12:56:49] 2024-11-08 17:56:30,298 | INFO     | ..............................
[2024-11-08 12:56:49] 2024-11-08 17:56:30,298 | INFO     | . Timing measurements:
[2024-11-08 12:56:49] 2024-11-08 17:56:30,298 | INFO     | . get job = 0 s
[2024-11-08 12:56:49] 2024-11-08 17:56:30,298 | INFO     | . initial setup = 9 s
[2024-11-08 12:56:49] 2024-11-08 17:56:30,298 | INFO     | . payload setup = 4 s
[2024-11-08 12:56:49] 2024-11-08 17:56:30,298 | INFO     | . stage-in = 0 s
[2024-11-08 12:56:49] 2024-11-08 17:56:30,298 | INFO     | . payload execution = 4402 s
[2024-11-08 12:56:49] 2024-11-08 17:56:30,299 | INFO     | . stage-out = 0 s
[2024-11-08 12:56:49] 2024-11-08 17:56:30,299 | INFO     | . log creation = 0 s
[2024-11-08 12:56:49] 2024-11-08 17:56:30,299 | INFO     | ..............................
[2024-11-08 12:56:49] 2024-11-08 17:56:30,840 | INFO     | 
[2024-11-08 12:56:49] 2024-11-08 17:56:30,840 | INFO     | job summary report
[2024-11-08 12:56:49] 2024-11-08 17:56:30,841 | INFO     | --------------------------------------------------
[2024-11-08 12:56:49] 2024-11-08 17:56:30,841 | INFO     | PanDA job id: 6395635662
[2024-11-08 12:56:49] 2024-11-08 17:56:30,841 | INFO     | task id: 41944181
[2024-11-08 12:56:49] 2024-11-08 17:56:30,841 | INFO     | errors: (none)
[2024-11-08 12:56:49] 2024-11-08 17:56:30,841 | INFO     | status: LOG_TRANSFER = DONE 
[2024-11-08 12:56:49] 2024-11-08 17:56:30,841 | INFO     | pilot state: finished 
[2024-11-08 12:56:49] 2024-11-08 17:56:30,841 | INFO     | transexitcode: 0
[2024-11-08 12:56:49] 2024-11-08 17:56:30,841 | INFO     | exeerrorcode: 0
[2024-11-08 12:56:49] 2024-11-08 17:56:30,841 | INFO     | exeerrordiag: 
[2024-11-08 12:56:49] 2024-11-08 17:56:30,841 | INFO     | exitcode: 0
[2024-11-08 12:56:49] 2024-11-08 17:56:30,842 | INFO     | exitmsg: OK
[2024-11-08 12:56:49] 2024-11-08 17:56:30,842 | INFO     | cpuconsumptiontime: 43763 s
[2024-11-08 12:56:49] 2024-11-08 17:56:30,842 | INFO     | nevents: 400
[2024-11-08 12:56:49] 2024-11-08 17:56:30,842 | INFO     | neventsw: 0
[2024-11-08 12:56:49] 2024-11-08 17:56:30,842 | INFO     | pid: 2734105
[2024-11-08 12:56:49] 2024-11-08 17:56:30,842 | INFO     | pgrp: 2734105
[2024-11-08 12:56:49] 2024-11-08 17:56:30,842 | INFO     | corecount: 12
[2024-11-08 12:56:49] 2024-11-08 17:56:30,842 | INFO     | event service: False
[2024-11-08 12:56:49] 2024-11-08 17:56:30,842 | INFO     | sizes: {0: 2404329, 1: 2404471, 4: 2404677, 11: 2404705, 4411: 2430715, 4413: 2439937, 4419: 2440051}
[2024-11-08 12:56:49] 2024-11-08 17:56:30,842 | INFO     | --------------------------------------------------
[2024-11-08 12:56:49] 2024-11-08 17:56:30,843 | INFO     | 
[2024-11-08 12:56:49] 2024-11-08 17:56:30,843 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2024-11-08 12:56:49] 2024-11-08 17:56:30,865 | INFO     | queue jobs had 0 job(s) [purged]
[2024-11-08 12:56:49] 2024-11-08 17:56:30,865 | INFO     | queue payloads had 0 job(s) [purged]
[2024-11-08 12:56:49] 2024-11-08 17:56:30,865 | INFO     | queue data_in had 0 job(s) [purged]
[2024-11-08 12:56:49] 2024-11-08 17:56:30,865 | INFO     | queue data_out had 0 job(s) [purged]
[2024-11-08 12:56:49] 2024-11-08 17:56:30,865 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-11-08 12:56:49] 2024-11-08 17:56:30,865 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-11-08 12:56:49] 2024-11-08 17:56:30,865 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-11-08 12:56:49] 2024-11-08 17:56:30,866 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-11-08 12:56:49] 2024-11-08 17:56:30,866 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-11-08 12:56:49] 2024-11-08 17:56:30,866 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-11-08 12:56:49] 2024-11-08 17:56:30,866 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-11-08 12:56:49] 2024-11-08 17:56:30,866 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-11-08 12:56:49] 2024-11-08 17:56:30,866 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-11-08 12:56:49] 2024-11-08 17:56:30,866 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-11-08 12:56:49] 2024-11-08 17:56:30,866 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-11-08 12:56:49] 2024-11-08 17:56:30,866 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-11-08 12:56:49] 2024-11-08 17:56:30,867 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-11-08 12:56:49] 2024-11-08 17:56:30,867 | INFO     | queue completed_jobids has 1 job(s)
[2024-11-08 12:56:49] 2024-11-08 17:56:30,867 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-11-08 12:56:49] 2024-11-08 17:56:30,867 | INFO     | queue messages had 0 job(s) [purged]
[2024-11-08 12:56:49] 2024-11-08 17:56:30,867 | INFO     | job 6395635662 has completed (purged errors)
[2024-11-08 12:56:49] 2024-11-08 17:56:30,867 | INFO     | overall cleanup function is called
[2024-11-08 12:56:49] 2024-11-08 17:56:31,874 | INFO     | --- collectZombieJob: --- 10, [2734105]
[2024-11-08 12:56:49] 2024-11-08 17:56:31,874 | INFO     | zombie collector waiting for pid 2734105
[2024-11-08 12:56:49] 2024-11-08 17:56:31,874 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-11-08 12:56:49] 2024-11-08 17:56:31,874 | INFO     | collected zombie processes
[2024-11-08 12:56:49] 2024-11-08 17:56:31,874 | INFO     | will attempt to kill all subprocesses of pid=2734105
[2024-11-08 12:56:49] 2024-11-08 17:56:32,001 | INFO     | process IDs to be killed: [2734105] (in reverse order)
[2024-11-08 12:56:49] 2024-11-08 17:56:32,121 | WARNING  | found no corresponding commands to process id(s)
[2024-11-08 12:56:49] 2024-11-08 17:56:32,122 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-11-08 12:56:49] 2024-11-08 17:56:32,132 | INFO     | did not find any defunct processes belonging to 2734105
[2024-11-08 12:56:49] 2024-11-08 17:56:32,142 | INFO     | did not find any defunct processes belonging to 2734105
[2024-11-08 12:56:49] 2024-11-08 17:56:32,142 | INFO     | ready for new job
[2024-11-08 12:56:49] 2024-11-08 17:56:32,142 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-11-08 12:56:49] 2024-11-08 17:56:32,144 | INFO     | **************************************
[2024-11-08 12:56:49] 2024-11-08 17:56:32,144 | INFO     | ***  PanDA Pilot version 3.9.1.13  ***
[2024-11-08 12:56:49] 2024-11-08 17:56:32,144 | INFO     | **************************************
[2024-11-08 12:56:49] 2024-11-08 17:56:32,144 | INFO     | 
[2024-11-08 12:56:49] 2024-11-08 17:56:32,169 | INFO     | architecture information:
[2024-11-08 12:56:49] 2024-11-08 17:56:32,169 | INFO     | executing command: cat /etc/os-release
[2024-11-08 12:56:49] 2024-11-08 17:56:32,186 | INFO     | cat /etc/os-release:
[2024-11-08 12:56:49] NAME="CentOS Linux"
[2024-11-08 12:56:49] VERSION="7 (Core)"
[2024-11-08 12:56:49] ID="centos"
[2024-11-08 12:56:49] ID_LIKE="rhel fedora"
[2024-11-08 12:56:49] VERSION_ID="7"
[2024-11-08 12:56:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-11-08 12:56:49] ANSI_COLOR="0;31"
[2024-11-08 12:56:49] CPE_NAME="cpe:/o:centos:centos:7"
[2024-11-08 12:56:49] HOME_URL="https://www.centos.org/"
[2024-11-08 12:56:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-11-08 12:56:49] 
[2024-11-08 12:56:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-11-08 12:56:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-11-08 12:56:49] REDHAT_SUPPORT_PRODUCT="centos"
[2024-11-08 12:56:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-11-08 12:56:49] 
[2024-11-08 12:56:49] 2024-11-08 17:56:32,186 | INFO     | **************************************
[2024-11-08 12:56:49] 2024-11-08 17:56:32,689 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2024-11-08 12:56:49] 2024-11-08 17:56:32,708 | INFO     | sufficient remaining disk space (399364849664 B)
[2024-11-08 12:56:49] 2024-11-08 17:56:32,708 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-11-08 12:56:49] 2024-11-08 17:56:32,708 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-11-08 12:56:49] 2024-11-08 17:56:32,709 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-11-08 12:56:49] 2024-11-08 17:56:32,709 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-11-08 12:56:49] 2024-11-08 17:56:32,709 | INFO     | aborting loop
[2024-11-08 12:56:49] 2024-11-08 17:56:33,048 | INFO     | all payload control threads have been joined
[2024-11-08 12:56:49] 2024-11-08 17:56:33,061 | INFO     | all job control threads have been joined
[2024-11-08 12:56:49] 2024-11-08 17:56:33,542 | INFO     | found 0 job(s) in 20 queues
[2024-11-08 12:56:49] 2024-11-08 17:56:33,542 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-11-08 12:56:49] 2024-11-08 17:56:33,542 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-11-08 12:56:49] 2024-11-08 17:56:33,634 | INFO     | all data control threads have been joined
[2024-11-08 12:56:49] 2024-11-08 17:56:33,714 | INFO     | [job] retrieve thread has finished
[2024-11-08 12:56:49] 2024-11-08 17:56:33,714 | INFO     | [job] job monitor thread has finished
[2024-11-08 12:56:49] 2024-11-08 17:56:33,762 | INFO     | [payload] validate_pre thread has finished
[2024-11-08 12:56:49] 2024-11-08 17:56:34,050 | INFO     | [payload] control thread has finished
[2024-11-08 12:56:49] 2024-11-08 17:56:34,066 | INFO     | [job] control thread has finished
[2024-11-08 12:56:49] 2024-11-08 17:56:34,294 | INFO     | [payload] failed_post thread has finished
[2024-11-08 12:56:49] 2024-11-08 17:56:34,326 | INFO     | [data] copytool_in thread has finished
[2024-11-08 12:56:49] 2024-11-08 17:56:34,338 | INFO     | [payload] validate_post thread has finished
[2024-11-08 12:56:49] 2024-11-08 17:56:34,589 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-11-08 12:56:49] 2024-11-08 17:56:34,638 | INFO     | [data] control thread has finished
[2024-11-08 12:56:49] 2024-11-08 17:56:34,714 | INFO     | [data] copytool_out thread has finished
[2024-11-08 12:56:49] 2024-11-08 17:56:34,926 | INFO     | [job] create_data_payload thread has finished
[2024-11-08 12:56:49] 2024-11-08 17:56:34,938 | INFO     | [job] validate thread has finished
[2024-11-08 12:56:49] 2024-11-08 17:56:35,007 | INFO     | [payload] execute_payloads thread has finished
[2024-11-08 12:56:49] 2024-11-08 17:56:35,394 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-11-08 12:56:49] 2024-11-08 17:56:36,398 | INFO     | [job] queue monitor thread has finished
[2024-11-08 12:56:49] 2024-11-08 17:56:38,594 | INFO     | [data] queue_monitor thread has finished
[2024-11-08 12:56:49] 2024-11-08 17:56:43,138 | INFO     | job.realtimelogging is not enabled
[2024-11-08 12:56:49] 2024-11-08 17:56:44,142 | INFO     | [payload] run_realtimelog thread has finished
[2024-11-08 12:56:49] 2024-11-08 17:56:44,246 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140668126930752)>', '<ExcThread(monitor, started 140667560916736)>']
[2024-11-08 12:56:49] 2024-11-08 17:56:44,586 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-11-08 12:56:49] 2024-11-08 17:56:44,586 | INFO     | [monitor] control thread has ended
[2024-11-08 12:56:49] 2024-11-08 17:56:49,270 | INFO     | all workflow threads have been joined
[2024-11-08 12:56:49] 2024-11-08 17:56:49,270 | INFO     | end of generic workflow (traces error code: 0)
[2024-11-08 12:56:49] 2024-11-08 17:56:49,270 | INFO     | traces error code: 0
[2024-11-08 12:56:49] 2024-11-08 17:56:49,271 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-11-08 12:56:49] 2024-11-08 17:56:49,481 [wrapper] ==== pilot stdout END ====
[2024-11-08 12:56:49] 2024-11-08 17:56:49,483 [wrapper] ==== wrapper stdout RESUME ====
[2024-11-08 12:56:49] 2024-11-08 17:56:49,485 [wrapper] pilotpid: 2726125
[2024-11-08 12:56:49] 2024-11-08 17:56:49,487 [wrapper] Pilot exit status: 0
[2024-11-08 12:56:49] 2024-11-08 17:56:49,495 [wrapper] pandaids: 6395635662
[2024-11-08 12:56:49] 2024-11-08 17:56:49,554 [wrapper] cleanup supervisor_pilot 2886046 2726126
[2024-11-08 12:56:49] 2024-11-08 17:56:49,557 [wrapper] Test setup, not cleaning
[2024-11-08 12:56:49] 2024-11-08 17:56:49,559 [wrapper] ==== wrapper stdout END ====
[2024-11-08 12:56:49] 2024-11-08 17:56:49,564 [wrapper] ==== wrapper stderr END ====
[2024-11-08 12:56:49] 2024-11-08 17:56:49,568 [wrapper] apfmon messages muted
[2024-11-08 12:56:49]  *** Error codes and diagnostics ***
[2024-11-08 12:56:49]     "exeErrorCode": 0,
[2024-11-08 12:56:49]     "exeErrorDiag": "",
[2024-11-08 12:56:49]     "pilotErrorCode": 0,
[2024-11-08 12:56:49]     "pilotErrorDiag": "",
[2024-11-08 12:56:49]  *** Listing of results directory ***
[2024-11-08 12:56:49] total 458976
[2024-11-08 12:56:49] -rw-r--r-- 1 boinc boinc    486088 Nov  8 08:08 pilot3.tar.gz
[2024-11-08 12:56:49] -rw-r--r-- 1 boinc boinc      5652 Nov  8 08:16 queuedata.json
[2024-11-08 12:56:49] -rwx------ 1 boinc boinc     34589 Nov  8 08:17 runpilot2-wrapper.sh
[2024-11-08 12:56:49] -rw-r--r-- 1 boinc boinc       100 Nov  8 11:42 wrapper_26015_x86_64-pc-linux-gnu
[2024-11-08 12:56:49] -rwxr-xr-x 1 boinc boinc      7986 Nov  8 11:42 run_atlas
[2024-11-08 12:56:49] -rw-r--r-- 1 boinc boinc       105 Nov  8 11:42 job.xml
[2024-11-08 12:56:49] -rw-r--r-- 1 boinc boinc      7599 Nov  8 11:42 init_data.xml
[2024-11-08 12:56:49] -rw-r--r-- 2 boinc boinc 271385337 Nov  8 11:42 EVNT.41944177._000028.pool.root.1
[2024-11-08 12:56:49] -rw-r--r-- 2 boinc boinc     17569 Nov  8 11:42 start_atlas.sh
[2024-11-08 12:56:49] drwxrwx--x 2 boinc boinc      4096 Nov  8 11:42 shared
[2024-11-08 12:56:49] -rw-r--r-- 2 boinc boinc    499798 Nov  8 11:42 input.tar.gz
[2024-11-08 12:56:49] -rw-r--r-- 1 boinc boinc         0 Nov  8 11:42 boinc_lockfile
[2024-11-08 12:56:49] -rw-r--r-- 1 boinc boinc      2624 Nov  8 11:42 pandaJob.out
[2024-11-08 12:56:49] -rw------- 1 boinc boinc       460 Nov  8 11:42 setup.sh.local
[2024-11-08 12:56:49] -rw------- 1 boinc boinc   1011227 Nov  8 11:42 agis_schedconf.cvmfs.json
[2024-11-08 12:56:49] -rw------- 1 boinc boinc   1597102 Nov  8 11:42 agis_ddmendpoints.agis.ALL.json
[2024-11-08 12:56:49] drwx------ 4 boinc boinc      4096 Nov  8 11:42 pilot3
[2024-11-08 12:56:49] -rw------- 1 boinc boinc        95 Nov  8 12:55 pilot_heartbeat.json
[2024-11-08 12:56:49] -rw------- 1 boinc boinc 193170189 Nov  8 12:55 HITS.41944181._001046.pool.root.1
[2024-11-08 12:56:49] -rw-r--r-- 1 boinc boinc       529 Nov  8 12:55 boinc_task_state.xml
[2024-11-08 12:56:49] -rw------- 1 boinc boinc      1026 Nov  8 12:56 memory_monitor_summary.json
[2024-11-08 12:56:49] -rw------- 1 boinc boinc    368372 Nov  8 12:56 log.41944181._001046.job.log.tgz.1
[2024-11-08 12:56:49] -rw------- 1 boinc boinc      7716 Nov  8 12:56 heartbeat.json
[2024-11-08 12:56:49] -rw-r--r-- 1 boinc boinc      8192 Nov  8 12:56 boinc_mmap_file
[2024-11-08 12:56:49] -rw-r--r-- 1 boinc boinc        27 Nov  8 12:56 wrapper_checkpoint.txt
[2024-11-08 12:56:49] -rw------- 1 boinc boinc      4295 Nov  8 12:56 pilotlog.txt
[2024-11-08 12:56:49] -rw------- 1 boinc boinc    433810 Nov  8 12:56 log.41944181._001046.job.log.1
[2024-11-08 12:56:49] -rw------- 1 boinc boinc       357 Nov  8 12:56 output.list
[2024-11-08 12:56:49] -rw-r--r-- 1 boinc boinc       620 Nov  8 12:56 runtime_log
[2024-11-08 12:56:49] -rw------- 1 boinc boinc    819200 Nov  8 12:56 result.tar.gz
[2024-11-08 12:56:49] -rw-r--r-- 1 boinc boinc     11473 Nov  8 12:56 runtime_log.err
[2024-11-08 12:56:49] -rw------- 1 boinc boinc       650 Nov  8 12:56 NfWNDme2dT6n9Rq4apOajLDm4fhM0noT9bVorHsSDmYP7LDmSxDT9m.diag
[2024-11-08 12:56:49] -rw-r--r-- 1 boinc boinc     21159 Nov  8 12:56 stderr.txt
[2024-11-08 12:56:49] HITS file was successfully produced:
[2024-11-08 12:56:49] -rw------- 1 boinc boinc 193170189 Nov  8 12:55 shared/HITS.pool.root.1
[2024-11-08 12:56:49]  *** Contents of shared directory: ***
[2024-11-08 12:56:49] total 454992
[2024-11-08 12:56:49] -rw-r--r-- 2 boinc boinc 271385337 Nov  8 11:42 ATLAS.root_0
[2024-11-08 12:56:49] -rw-r--r-- 2 boinc boinc     17569 Nov  8 11:42 start_atlas.sh
[2024-11-08 12:56:49] -rw-r--r-- 2 boinc boinc    499798 Nov  8 11:42 input.tar.gz
[2024-11-08 12:56:49] -rw------- 1 boinc boinc 193170189 Nov  8 12:55 HITS.pool.root.1
[2024-11-08 12:56:49] -rw------- 1 boinc boinc    819200 Nov  8 12:56 result.tar.gz
12:56:51 (2722039): run_atlas exited; CPU time 43639.214821
12:56:51 (2722039): called boinc_finish(0)

</stderr_txt>
]]>

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