Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
15:34:05 (3375018): wrapper (7.7.26015): starting
15:34:05 (3375018): wrapper: running run_atlas (--nthreads 12)
[2024-11-08 15:34:05] Arguments: --nthreads 12
[2024-11-08 15:34:05] Threads: 12
[2024-11-08 15:34:05] Checking for CVMFS
[2024-11-08 15:34:05] Probing /cvmfs/atlas.cern.ch... OK
[2024-11-08 15:34:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-11-08 15:34:05] Running cvmfs_config stat atlas.cern.ch
[2024-11-08 15:34:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-11-08 15:34:05] 2.11.5.0 2308668 350 55188 139253 2 56 3779137 4194304 915 130560 0 824941 98.216 1666326 3725 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.150.1:3128 1
[2024-11-08 15:34:05] CVMFS is ok
[2024-11-08 15:34:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-11-08 15:34:05] Checking for apptainer binary...
[2024-11-08 15:34:05] apptainer is not installed, using version from CVMFS
[2024-11-08 15:34:05] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-11-08 15:34:05] Trebeth
[2024-11-08 15:34:05] apptainer works
[2024-11-08 15:34:05] Set ATHENA_PROC_NUMBER=12
[2024-11-08 15:34:05] Set ATHENA_CORE_NUMBER=12
[2024-11-08 15:34:05] Starting ATLAS job with PandaID=6395635679
[2024-11-08 15:34:05] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-11-08 16:22:01]  *** The last 200 lines of the pilot log: ***
[2024-11-08 16:22:01]  direct_access_wan=False
[2024-11-08 16:22:01]  domain=
[2024-11-08 16:22:01]  filesize=1625936
[2024-11-08 16:22:01]  filetype=log
[2024-11-08 16:22:01]  guid=a92c8f09-6709-4f50-8404-17884ddc3420
[2024-11-08 16:22:01]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-11-08 16:22:01]  is_altstaged=None
[2024-11-08 16:22:01]  is_tar=False
[2024-11-08 16:22:01]  lfn=log.41843813._007842.job.log.tgz.1
[2024-11-08 16:22:01]  mtime=0
[2024-11-08 16:22:01]  protocol_id=None
[2024-11-08 16:22:01]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-11-08 16:22:01]  replicas=None
[2024-11-08 16:22:01]  scope=mc16_13TeV
[2024-11-08 16:22:01]  status=None
[2024-11-08 16:22:01]  status_code=0
[2024-11-08 16:22:01]  storage_token=
[2024-11-08 16:22:01]  surl=/var/lib/boinc-client/slots/0/PanDA_Pilot-6395635679/log.41843813._007842.job.log.tgz.1
[2024-11-08 16:22:01]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/1c/15/log.41843813._007842.job.log.tgz.1
[2024-11-08 16:22:01]  workdir=None
[2024-11-08 16:22:01] ]
[2024-11-08 16:22:01] 2024-11-08 21:21:39,247 | INFO     | transferring file log.41843813._007842.job.log.tgz.1 from /var/lib/boinc-client/slots/0/PanDA_Pilot-6395635679/log.41843813._007842.job.log.tgz.1 to /var/lib/boinc
[2024-11-08 16:22:01] 2024-11-08 21:21:39,248 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/0/PanDA_Pilot-6395635679/log.41843813._007842.job.log.tgz.1 /var/lib/boinc-client/slots/0/log.418438
[2024-11-08 16:22:01] 2024-11-08 21:21:39,267 | INFO     | adding to output.list: log.41843813._007842.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/1c/15/log.41843813._007842.job.log.tgz.
[2024-11-08 16:22:01] 2024-11-08 21:21:39,267 | INFO     | alt stage-out settings: ['pl', 'pw', 'w', 'default'], is_unified=False, altstageout=False, remain_files=0, has_altstorage=True
[2024-11-08 16:22:01] 2024-11-08 21:21:39,268 | INFO     | summary of transferred files:
[2024-11-08 16:22:01] 2024-11-08 21:21:39,268 | INFO     |  -- lfn=log.41843813._007842.job.log.tgz.1, status_code=0, status=transferred
[2024-11-08 16:22:01] 2024-11-08 21:21:39,268 | INFO     | stage-out finished correctly
[2024-11-08 16:22:01] 2024-11-08 21:21:40,647 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-11-08 16:22:01] 2024-11-08 21:21:42,826 | INFO     | job 6395635679 has state=finished
[2024-11-08 16:22:01] 2024-11-08 21:21:42,826 | INFO     | preparing for final server update for job 6395635679 in state='finished'
[2024-11-08 16:22:01] 2024-11-08 21:21:42,827 | INFO     | this job has now completed (state=finished)
[2024-11-08 16:22:01] 2024-11-08 21:21:42,827 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-11-08 16:22:01] 2024-11-08 21:21:42,827 | INFO     | log transfer has been attempted: DONE
[2024-11-08 16:22:01] 2024-11-08 21:21:42,828 | INFO     | job 6395635679 has finished - writing final server update
[2024-11-08 16:22:01] 2024-11-08 21:21:42,828 | INFO     | total number of processed events: 50 (read)
[2024-11-08 16:22:01] 2024-11-08 21:21:42,850 | INFO     | executing command: lscpu
[2024-11-08 16:22:01] 2024-11-08 21:21:42,914 | INFO     | found 28 cores (14 cores per socket, 2 sockets)
[2024-11-08 16:22:01] 2024-11-08 21:21:42,935 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-11-08 16:22:01] 2024-11-08 21:21:49,956 | INFO     | CPU arch script returned: x86-64-v3
[2024-11-08 16:22:01] 2024-11-08 21:21:49,956 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6395635679/memory_monitor_summary.json (trf name=prmon)
[2024-11-08 16:22:01] 2024-11-08 21:21:49,957 | INFO     | extracted standard info from prmon json
[2024-11-08 16:22:01] 2024-11-08 21:21:49,958 | INFO     | extracted standard memory fields from prmon json
[2024-11-08 16:22:01] 2024-11-08 21:21:49,958 | WARNING  | GPU info not found in prmon json: 'gpu'
[2024-11-08 16:22:01] 2024-11-08 21:21:49,967 | INFO     | fitting pss+swap vs Time
[2024-11-08 16:22:01] 2024-11-08 21:21:49,967 | INFO     | model: linear, x: [1731098391.0, 1731098452.0, 1731098513.0, 1731098574.0, 1731098635.0, 1731098696.0, 1731098757.0, 1731098818.0, 1731098879.0, 1731098940.0, 1731
[2024-11-08 16:22:01] 2024-11-08 21:21:49,967 | INFO     | sum of square deviations: 19832940.0
[2024-11-08 16:22:01] 2024-11-08 21:21:49,968 | INFO     | sum of deviations: 5173063852.000003
[2024-11-08 16:22:01] 2024-11-08 21:21:49,968 | INFO     | mean x: 1731099581.0
[2024-11-08 16:22:01] 2024-11-08 21:21:49,968 | INFO     | mean y: 2312674.075
[2024-11-08 16:22:01] 2024-11-08 21:21:49,968 | INFO     | -- intersect: -451523717590.9009
[2024-11-08 16:22:01] 2024-11-08 21:21:49,968 | INFO     | intersect: -451523717590.9009
[2024-11-08 16:22:01] 2024-11-08 21:21:49,968 | INFO     | chi2: 7.181294921126517
[2024-11-08 16:22:01] 2024-11-08 21:21:49,968 | INFO     | -- intersect: -451523717590.9009
[2024-11-08 16:22:01] 2024-11-08 21:21:49,968 | INFO     | current memory leak: 260.83 B/s (using 40 data points, chi2=7.18)
[2024-11-08 16:22:01] 2024-11-08 21:21:49,969 | INFO     | ..............................
[2024-11-08 16:22:01] 2024-11-08 21:21:49,969 | INFO     | . Timing measurements:
[2024-11-08 16:22:01] 2024-11-08 21:21:49,969 | INFO     | . get job = 0 s
[2024-11-08 16:22:01] 2024-11-08 21:21:49,970 | INFO     | . initial setup = 2 s
[2024-11-08 16:22:01] 2024-11-08 21:21:49,970 | INFO     | . payload setup = 12 s
[2024-11-08 16:22:01] 2024-11-08 21:21:49,970 | INFO     | . stage-in = 0 s
[2024-11-08 16:22:01] 2024-11-08 21:21:49,970 | INFO     | . payload execution = 2811 s
[2024-11-08 16:22:01] 2024-11-08 21:21:49,970 | INFO     | . stage-out = 0 s
[2024-11-08 16:22:01] 2024-11-08 21:21:49,970 | INFO     | . log creation = 0 s
[2024-11-08 16:22:01] 2024-11-08 21:21:49,970 | INFO     | ..............................
[2024-11-08 16:22:01] 2024-11-08 21:21:50,081 | WARNING  | process 3387040 is no longer using CPU - aborting
[2024-11-08 16:22:01] 2024-11-08 21:21:50,082 | INFO     | aborting job monitoring since job object (job id=6395635679) has expired
[2024-11-08 16:22:01] 2024-11-08 21:21:50,264 | INFO     | 
[2024-11-08 16:22:01] 2024-11-08 21:21:50,265 | INFO     | job summary report
[2024-11-08 16:22:01] 2024-11-08 21:21:50,265 | INFO     | --------------------------------------------------
[2024-11-08 16:22:01] 2024-11-08 21:21:50,265 | INFO     | PanDA job id: 6395635679
[2024-11-08 16:22:01] 2024-11-08 21:21:50,265 | INFO     | task id: 41843813
[2024-11-08 16:22:01] 2024-11-08 21:21:50,265 | INFO     | errors: (none)
[2024-11-08 16:22:01] 2024-11-08 21:21:50,265 | INFO     | status: LOG_TRANSFER = DONE 
[2024-11-08 16:22:01] 2024-11-08 21:21:50,265 | INFO     | pilot state: finished 
[2024-11-08 16:22:01] 2024-11-08 21:21:50,265 | INFO     | transexitcode: 0
[2024-11-08 16:22:01] 2024-11-08 21:21:50,266 | INFO     | exeerrorcode: 0
[2024-11-08 16:22:01] 2024-11-08 21:21:50,266 | INFO     | exeerrordiag: 
[2024-11-08 16:22:01] 2024-11-08 21:21:50,266 | INFO     | exitcode: 0
[2024-11-08 16:22:01] 2024-11-08 21:21:50,266 | INFO     | exitmsg: OK
[2024-11-08 16:22:01] 2024-11-08 21:21:50,266 | INFO     | cpuconsumptiontime: 15647 s
[2024-11-08 16:22:01] 2024-11-08 21:21:50,266 | INFO     | nevents: 50
[2024-11-08 16:22:01] 2024-11-08 21:21:50,266 | INFO     | neventsw: 0
[2024-11-08 16:22:01] 2024-11-08 21:21:50,266 | INFO     | pid: 3387040
[2024-11-08 16:22:01] 2024-11-08 21:21:50,266 | INFO     | pgrp: 3387040
[2024-11-08 16:22:01] 2024-11-08 21:21:50,266 | INFO     | corecount: 12
[2024-11-08 16:22:01] 2024-11-08 21:21:50,266 | INFO     | event service: False
[2024-11-08 16:22:01] 2024-11-08 21:21:50,267 | INFO     | sizes: {0: 2404688, 1: 2404943, 5: 2405149, 11: 2405205, 2827: 2431143, 2828: 2431142, 2829: 2440360, 2831: 2440416, 2840: 2440638}
[2024-11-08 16:22:01] 2024-11-08 21:21:50,267 | INFO     | --------------------------------------------------
[2024-11-08 16:22:01] 2024-11-08 21:21:50,267 | INFO     | 
[2024-11-08 16:22:01] 2024-11-08 21:21:50,267 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2024-11-08 16:22:01] 2024-11-08 21:21:50,287 | INFO     | queue jobs had 0 job(s) [purged]
[2024-11-08 16:22:01] 2024-11-08 21:21:50,287 | INFO     | queue payloads had 0 job(s) [purged]
[2024-11-08 16:22:01] 2024-11-08 21:21:50,287 | INFO     | queue data_in had 0 job(s) [purged]
[2024-11-08 16:22:01] 2024-11-08 21:21:50,287 | INFO     | queue data_out had 0 job(s) [purged]
[2024-11-08 16:22:01] 2024-11-08 21:21:50,287 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-11-08 16:22:01] 2024-11-08 21:21:50,288 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-11-08 16:22:01] 2024-11-08 21:21:50,288 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-11-08 16:22:01] 2024-11-08 21:21:50,288 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-11-08 16:22:01] 2024-11-08 21:21:50,288 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-11-08 16:22:01] 2024-11-08 21:21:50,288 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-11-08 16:22:01] 2024-11-08 21:21:50,288 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-11-08 16:22:01] 2024-11-08 21:21:50,288 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-11-08 16:22:01] 2024-11-08 21:21:50,288 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-11-08 16:22:01] 2024-11-08 21:21:50,288 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-11-08 16:22:01] 2024-11-08 21:21:50,289 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-11-08 16:22:01] 2024-11-08 21:21:50,289 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-11-08 16:22:01] 2024-11-08 21:21:50,289 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-11-08 16:22:01] 2024-11-08 21:21:50,289 | INFO     | queue completed_jobids has 1 job(s)
[2024-11-08 16:22:01] 2024-11-08 21:21:50,289 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-11-08 16:22:01] 2024-11-08 21:21:50,289 | INFO     | queue messages had 0 job(s) [purged]
[2024-11-08 16:22:01] 2024-11-08 21:21:50,289 | INFO     | job 6395635679 has completed (purged errors)
[2024-11-08 16:22:01] 2024-11-08 21:21:50,289 | INFO     | overall cleanup function is called
[2024-11-08 16:22:01] 2024-11-08 21:21:51,306 | INFO     | --- collectZombieJob: --- 10, [3387040]
[2024-11-08 16:22:01] 2024-11-08 21:21:51,306 | INFO     | zombie collector waiting for pid 3387040
[2024-11-08 16:22:01] 2024-11-08 21:21:51,306 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-11-08 16:22:01] 2024-11-08 21:21:51,306 | INFO     | collected zombie processes
[2024-11-08 16:22:01] 2024-11-08 21:21:51,306 | INFO     | will attempt to kill all subprocesses of pid=3387040
[2024-11-08 16:22:01] 2024-11-08 21:21:51,431 | INFO     | process IDs to be killed: [3387040] (in reverse order)
[2024-11-08 16:22:01] 2024-11-08 21:21:51,539 | WARNING  | found no corresponding commands to process id(s)
[2024-11-08 16:22:01] 2024-11-08 21:21:51,539 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-11-08 16:22:01] 2024-11-08 21:21:51,549 | INFO     | did not find any defunct processes belonging to 3387040
[2024-11-08 16:22:01] 2024-11-08 21:21:51,557 | INFO     | did not find any defunct processes belonging to 3387040
[2024-11-08 16:22:01] 2024-11-08 21:21:51,558 | INFO     | ready for new job
[2024-11-08 16:22:01] 2024-11-08 21:21:51,558 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-11-08 16:22:01] 2024-11-08 21:21:51,559 | INFO     | **************************************
[2024-11-08 16:22:01] 2024-11-08 21:21:51,560 | INFO     | ***  PanDA Pilot version 3.9.1.13  ***
[2024-11-08 16:22:01] 2024-11-08 21:21:51,560 | INFO     | **************************************
[2024-11-08 16:22:01] 2024-11-08 21:21:51,560 | INFO     | 
[2024-11-08 16:22:01] 2024-11-08 21:21:51,582 | INFO     | architecture information:
[2024-11-08 16:22:01] 2024-11-08 21:21:51,586 | INFO     | executing command: cat /etc/os-release
[2024-11-08 16:22:01] 2024-11-08 21:21:51,602 | INFO     | cat /etc/os-release:
[2024-11-08 16:22:01] NAME="CentOS Linux"
[2024-11-08 16:22:01] VERSION="7 (Core)"
[2024-11-08 16:22:01] ID="centos"
[2024-11-08 16:22:01] ID_LIKE="rhel fedora"
[2024-11-08 16:22:01] VERSION_ID="7"
[2024-11-08 16:22:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-11-08 16:22:01] ANSI_COLOR="0;31"
[2024-11-08 16:22:01] CPE_NAME="cpe:/o:centos:centos:7"
[2024-11-08 16:22:01] HOME_URL="https://www.centos.org/"
[2024-11-08 16:22:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-11-08 16:22:01] 
[2024-11-08 16:22:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-11-08 16:22:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-11-08 16:22:01] REDHAT_SUPPORT_PRODUCT="centos"
[2024-11-08 16:22:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-11-08 16:22:01] 
[2024-11-08 16:22:01] 2024-11-08 21:21:51,602 | INFO     | **************************************
[2024-11-08 16:22:01] 2024-11-08 21:21:52,105 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2024-11-08 16:22:01] 2024-11-08 21:21:52,124 | INFO     | sufficient remaining disk space (399151988736 B)
[2024-11-08 16:22:01] 2024-11-08 21:21:52,124 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-11-08 16:22:01] 2024-11-08 21:21:52,125 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-11-08 16:22:01] 2024-11-08 21:21:52,125 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-11-08 16:22:01] 2024-11-08 21:21:52,125 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-11-08 16:22:01] 2024-11-08 21:21:52,125 | INFO     | found 0 job(s) in 20 queues
[2024-11-08 16:22:01] 2024-11-08 21:21:52,126 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-11-08 16:22:01] 2024-11-08 21:21:52,126 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-11-08 16:22:01] 2024-11-08 21:21:52,378 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-11-08 16:22:01] 2024-11-08 21:21:52,526 | INFO     | all data control threads have been joined
[2024-11-08 16:22:01] 2024-11-08 21:21:52,585 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-11-08 16:22:01] 2024-11-08 21:21:52,585 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-11-08 16:22:01] 2024-11-08 21:21:52,585 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-11-08 16:22:01] 2024-11-08 21:21:52,586 | INFO     | will abort loop
[2024-11-08 16:22:01] 2024-11-08 21:21:53,130 | INFO     | [job] retrieve thread has finished
[2024-11-08 16:22:01] 2024-11-08 21:21:53,190 | INFO     | [payload] validate_pre thread has finished
[2024-11-08 16:22:01] 2024-11-08 21:21:53,198 | INFO     | [payload] run_realtimelog thread has finished
[2024-11-08 16:22:01] 2024-11-08 21:21:53,215 | INFO     | all payload control threads have been joined
[2024-11-08 16:22:01] 2024-11-08 21:21:53,526 | INFO     | [payload] execute_payloads thread has finished
[2024-11-08 16:22:01] 2024-11-08 21:21:53,530 | INFO     | [data] control thread has finished
[2024-11-08 16:22:01] 2024-11-08 21:21:53,578 | INFO     | [payload] validate_post thread has finished
[2024-11-08 16:22:01] 2024-11-08 21:21:53,590 | INFO     | [job] job monitor thread has finished
[2024-11-08 16:22:01] 2024-11-08 21:21:53,646 | INFO     | all job control threads have been joined
[2024-11-08 16:22:01] 2024-11-08 21:21:54,062 | INFO     | [data] copytool_in thread has finished
[2024-11-08 16:22:01] 2024-11-08 21:21:54,218 | INFO     | [payload] control thread has finished
[2024-11-08 16:22:01] 2024-11-08 21:21:54,242 | INFO     | [job] validate thread has finished
[2024-11-08 16:22:01] 2024-11-08 21:21:54,382 | INFO     | [data] copytool_out thread has finished
[2024-11-08 16:22:01] 2024-11-08 21:21:54,542 | INFO     | [job] create_data_payload thread has finished
[2024-11-08 16:22:01] 2024-11-08 21:21:54,606 | INFO     | [payload] failed_post thread has finished
[2024-11-08 16:22:01] 2024-11-08 21:21:54,654 | INFO     | [job] control thread has finished
[2024-11-08 16:22:01] 2024-11-08 21:21:55,074 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-11-08 16:22:01] 2024-11-08 21:21:56,078 | INFO     | [job] queue monitor thread has finished
[2024-11-08 16:22:01] 2024-11-08 21:21:56,131 | INFO     | [data] queue_monitor thread has finished
[2024-11-08 16:22:01] 2024-11-08 21:21:56,510 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140110149125952)>', '<ExcThread(monitor, started 140109835900672)>']
[2024-11-08 16:22:01] 2024-11-08 21:21:57,146 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-11-08 16:22:01] 2024-11-08 21:21:57,146 | INFO     | [monitor] control thread has ended
[2024-11-08 16:22:01] 2024-11-08 21:22:01,534 | INFO     | all workflow threads have been joined
[2024-11-08 16:22:01] 2024-11-08 21:22:01,534 | INFO     | end of generic workflow (traces error code: 0)
[2024-11-08 16:22:01] 2024-11-08 21:22:01,534 | INFO     | traces error code: 0
[2024-11-08 16:22:01] 2024-11-08 21:22:01,534 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-11-08 16:22:01] 2024-11-08 21:22:01,698 [wrapper] ==== pilot stdout END ====
[2024-11-08 16:22:01] 2024-11-08 21:22:01,700 [wrapper] ==== wrapper stdout RESUME ====
[2024-11-08 16:22:01] 2024-11-08 21:22:01,702 [wrapper] pilotpid: 3379142
[2024-11-08 16:22:01] 2024-11-08 21:22:01,704 [wrapper] Pilot exit status: 0
[2024-11-08 16:22:01] 2024-11-08 21:22:01,713 [wrapper] pandaids: 6395635679
[2024-11-08 16:22:01] 2024-11-08 21:22:01,771 [wrapper] cleanup supervisor_pilot 3534509 3379143
[2024-11-08 16:22:01] 2024-11-08 21:22:01,773 [wrapper] Test setup, not cleaning
[2024-11-08 16:22:01] 2024-11-08 21:22:01,776 [wrapper] ==== wrapper stdout END ====
[2024-11-08 16:22:01] 2024-11-08 21:22:01,778 [wrapper] ==== wrapper stderr END ====
[2024-11-08 16:22:01] 2024-11-08 21:22:01,783 [wrapper] apfmon messages muted
[2024-11-08 16:22:01]  *** Error codes and diagnostics ***
[2024-11-08 16:22:01]     "exeErrorCode": 0,
[2024-11-08 16:22:01]     "exeErrorDiag": "",
[2024-11-08 16:22:01]     "pilotErrorCode": 0,
[2024-11-08 16:22:01]     "pilotErrorDiag": "",
[2024-11-08 16:22:01]  *** Listing of results directory ***
[2024-11-08 16:22:01] total 432076
[2024-11-08 16:22:01] -rw-r--r-- 1 boinc boinc    486088 Nov  8 08:08 pilot3.tar.gz
[2024-11-08 16:22:01] -rw-r--r-- 1 boinc boinc      5652 Nov  8 08:13 queuedata.json
[2024-11-08 16:22:01] -rwx------ 1 boinc boinc     34589 Nov  8 08:15 runpilot2-wrapper.sh
[2024-11-08 16:22:01] -rw-r--r-- 1 boinc boinc       100 Nov  8 15:34 wrapper_26015_x86_64-pc-linux-gnu
[2024-11-08 16:22:01] -rwxr-xr-x 1 boinc boinc      7986 Nov  8 15:34 run_atlas
[2024-11-08 16:22:01] -rw-r--r-- 1 boinc boinc       105 Nov  8 15:34 job.xml
[2024-11-08 16:22:01] -rw-r--r-- 2 boinc boinc     17569 Nov  8 15:34 start_atlas.sh
[2024-11-08 16:22:01] drwxrwx--x 2 boinc boinc      4096 Nov  8 15:34 shared
[2024-11-08 16:22:01] -rw-r--r-- 2 boinc boinc    499921 Nov  8 15:34 input.tar.gz
[2024-11-08 16:22:01] -rw-r--r-- 1 boinc boinc      7599 Nov  8 15:34 init_data.xml
[2024-11-08 16:22:01] -rw-r--r-- 2 boinc boinc 383812272 Nov  8 15:34 EVNT.41779894._000008.pool.root.1
[2024-11-08 16:22:01] -rw-r--r-- 1 boinc boinc         0 Nov  8 15:34 boinc_lockfile
[2024-11-08 16:22:01] -rw-r--r-- 1 boinc boinc      2887 Nov  8 15:34 pandaJob.out
[2024-11-08 16:22:01] -rw------- 1 boinc boinc       460 Nov  8 15:34 setup.sh.local
[2024-11-08 16:22:01] -rw------- 1 boinc boinc   1010863 Nov  8 15:34 agis_schedconf.cvmfs.json
[2024-11-08 16:22:01] -rw------- 1 boinc boinc   1597102 Nov  8 15:34 agis_ddmendpoints.agis.ALL.json
[2024-11-08 16:22:01] drwx------ 4 boinc boinc      4096 Nov  8 15:34 pilot3
[2024-11-08 16:22:01] -rw-r--r-- 1 boinc boinc       529 Nov  8 16:10 boinc_task_state.xml
[2024-11-08 16:22:01] -rw------- 1 boinc boinc        95 Nov  8 16:21 pilot_heartbeat.json
[2024-11-08 16:22:01] -rw------- 1 boinc boinc  50926002 Nov  8 16:21 HITS.41843813._007842.pool.root.1
[2024-11-08 16:22:01] -rw------- 1 boinc boinc      1037 Nov  8 16:21 memory_monitor_summary.json
[2024-11-08 16:22:01] -rw------- 1 boinc boinc   1625936 Nov  8 16:21 log.41843813._007842.job.log.tgz.1
[2024-11-08 16:22:01] -rw------- 1 boinc boinc      8521 Nov  8 16:21 heartbeat.json
[2024-11-08 16:22:01] -rw------- 1 boinc boinc      4532 Nov  8 16:22 pilotlog.txt
[2024-11-08 16:22:01] -rw------- 1 boinc boinc    306948 Nov  8 16:22 log.41843813._007842.job.log.1
[2024-11-08 16:22:01] -rw------- 1 boinc boinc       353 Nov  8 16:22 output.list
[2024-11-08 16:22:01] -rw-r--r-- 1 boinc boinc       620 Nov  8 16:22 runtime_log
[2024-11-08 16:22:01] -rw------- 1 boinc boinc   1955840 Nov  8 16:22 result.tar.gz
[2024-11-08 16:22:01] -rw-r--r-- 1 boinc boinc      8192 Nov  8 16:22 boinc_mmap_file
[2024-11-08 16:22:01] -rw-r--r-- 1 boinc boinc     11473 Nov  8 16:22 runtime_log.err
[2024-11-08 16:22:01] -rw------- 1 boinc boinc       650 Nov  8 16:22 KnBMDmo0dT6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmtAPNDm8wyUBn.diag
[2024-11-08 16:22:01] -rw-r--r-- 1 boinc boinc        27 Nov  8 16:22 wrapper_checkpoint.txt
[2024-11-08 16:22:01] -rw-r--r-- 1 boinc boinc     20887 Nov  8 16:22 stderr.txt
[2024-11-08 16:22:01] HITS file was successfully produced:
[2024-11-08 16:22:01] -rw------- 1 boinc boinc 50926002 Nov  8 16:21 shared/HITS.pool.root.1
[2024-11-08 16:22:01]  *** Contents of shared directory: ***
[2024-11-08 16:22:01] total 426984
[2024-11-08 16:22:01] -rw-r--r-- 2 boinc boinc     17569 Nov  8 15:34 start_atlas.sh
[2024-11-08 16:22:01] -rw-r--r-- 2 boinc boinc    499921 Nov  8 15:34 input.tar.gz
[2024-11-08 16:22:01] -rw-r--r-- 2 boinc boinc 383812272 Nov  8 15:34 ATLAS.root_0
[2024-11-08 16:22:01] -rw------- 1 boinc boinc  50926002 Nov  8 16:21 HITS.pool.root.1
[2024-11-08 16:22:01] -rw------- 1 boinc boinc   1955840 Nov  8 16:22 result.tar.gz
16:22:03 (3375018): run_atlas exited; CPU time 15537.341184
16:22:03 (3375018): called boinc_finish(0)

</stderr_txt>
]]>

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