Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
14:18:35 (3174118): wrapper (7.7.26015): starting
14:18:35 (3174118): wrapper: running run_atlas (--nthreads 12)
[2024-11-08 14:18:35] Arguments: --nthreads 12
[2024-11-08 14:18:35] Threads: 12
[2024-11-08 14:18:35] Checking for CVMFS
[2024-11-08 14:18:35] Probing /cvmfs/atlas.cern.ch... OK
[2024-11-08 14:18:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-11-08 14:18:35] Running cvmfs_config stat atlas.cern.ch
[2024-11-08 14:18:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-11-08 14:18:35] 2.11.5.0 2308668 274 54840 139252 1 185 3418529 4194305 851 130560 0 699837 97.899 1665149 3737 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.150.1:3128 1
[2024-11-08 14:18:35] CVMFS is ok
[2024-11-08 14:18:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-11-08 14:18:35] Checking for apptainer binary...
[2024-11-08 14:18:35] apptainer is not installed, using version from CVMFS
[2024-11-08 14:18:35] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-11-08 14:18:35] Trebeth
[2024-11-08 14:18:35] apptainer works
[2024-11-08 14:18:35] Set ATHENA_PROC_NUMBER=12
[2024-11-08 14:18:35] Set ATHENA_CORE_NUMBER=12
[2024-11-08 14:18:35] Starting ATLAS job with PandaID=6395538406
[2024-11-08 14:18:35] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-11-08 15:36:29]  *** The last 200 lines of the pilot log: ***
[2024-11-08 15:36:29]  filetype=log
[2024-11-08 15:36:29]  guid=3c60c6d9-39b6-45b2-9147-385d86ee7416
[2024-11-08 15:36:29]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-11-08 15:36:29]  is_altstaged=None
[2024-11-08 15:36:29]  is_tar=False
[2024-11-08 15:36:29]  lfn=log.41944689._002642.job.log.tgz.1
[2024-11-08 15:36:29]  mtime=0
[2024-11-08 15:36:29]  protocol_id=None
[2024-11-08 15:36:29]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-11-08 15:36:29]  replicas=None
[2024-11-08 15:36:29]  scope=mc23_13p6TeV
[2024-11-08 15:36:29]  status=None
[2024-11-08 15:36:29]  status_code=0
[2024-11-08 15:36:29]  storage_token=
[2024-11-08 15:36:29]  surl=/var/lib/boinc-client/slots/2/PanDA_Pilot-6395538406/log.41944689._002642.job.log.tgz.1
[2024-11-08 15:36:29]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2b/58/log.41944689._002642.job.log.tgz.1
[2024-11-08 15:36:29]  workdir=None
[2024-11-08 15:36:29] ]
[2024-11-08 15:36:29] 2024-11-08 20:36:04,774 | INFO     | transferring file log.41944689._002642.job.log.tgz.1 from /var/lib/boinc-client/slots/2/PanDA_Pilot-6395538406/log.41944689._002642.job.log.tgz.1 to /var/lib/boinc
[2024-11-08 15:36:29] 2024-11-08 20:36:04,774 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/2/PanDA_Pilot-6395538406/log.41944689._002642.job.log.tgz.1 /var/lib/boinc-client/slots/2/log.419446
[2024-11-08 15:36:29] 2024-11-08 20:36:04,787 | INFO     | adding to output.list: log.41944689._002642.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2b/58/log.41944689._002642.job.log.tg
[2024-11-08 15:36:29] 2024-11-08 20:36:04,788 | INFO     | alt stage-out settings: ['pl', 'pw', 'w', 'default'], is_unified=False, altstageout=False, remain_files=0, has_altstorage=True
[2024-11-08 15:36:29] 2024-11-08 20:36:04,788 | INFO     | summary of transferred files:
[2024-11-08 15:36:29] 2024-11-08 20:36:04,788 | INFO     |  -- lfn=log.41944689._002642.job.log.tgz.1, status_code=0, status=transferred
[2024-11-08 15:36:29] 2024-11-08 20:36:04,788 | INFO     | stage-out finished correctly
[2024-11-08 15:36:29] 2024-11-08 20:36:05,778 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-11-08 15:36:29] 2024-11-08 20:36:06,030 | INFO     | job 6395538406 has state=finished
[2024-11-08 15:36:29] 2024-11-08 20:36:06,030 | INFO     | preparing for final server update for job 6395538406 in state='finished'
[2024-11-08 15:36:29] 2024-11-08 20:36:06,219 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2024-11-08 15:36:29] 2024-11-08 20:36:06,220 | INFO     | this job has now completed (state=finished)
[2024-11-08 15:36:29] 2024-11-08 20:36:06,220 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-11-08 15:36:29] 2024-11-08 20:36:06,220 | INFO     | log transfer has been attempted: DONE
[2024-11-08 15:36:29] 2024-11-08 20:36:06,220 | INFO     | job 6395538406 has finished - writing final server update
[2024-11-08 15:36:29] 2024-11-08 20:36:06,220 | INFO     | total number of processed events: 400 (read)
[2024-11-08 15:36:29] 2024-11-08 20:36:06,241 | INFO     | executing command: lscpu
[2024-11-08 15:36:29] 2024-11-08 20:36:06,296 | INFO     | found 28 cores (14 cores per socket, 2 sockets)
[2024-11-08 15:36:29] 2024-11-08 20:36:06,314 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-11-08 15:36:29] 2024-11-08 20:36:06,485 | INFO     | monitor loop #361: job 0:6395538406 is in state 'finished'
[2024-11-08 15:36:29] 2024-11-08 20:36:06,485 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-11-08 15:36:29] 2024-11-08 20:36:08,988 | INFO     | monitor loop #362: job 0:6395538406 is in state 'finished'
[2024-11-08 15:36:29] 2024-11-08 20:36:08,989 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-11-08 15:36:29] 2024-11-08 20:36:10,046 | INFO     | CPU arch script returned: x86-64-v3
[2024-11-08 15:36:29] 2024-11-08 20:36:10,046 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-6395538406/memory_monitor_summary.json (trf name=prmon)
[2024-11-08 15:36:29] 2024-11-08 20:36:10,047 | INFO     | extracted standard info from prmon json
[2024-11-08 15:36:29] 2024-11-08 20:36:10,048 | INFO     | extracted standard memory fields from prmon json
[2024-11-08 15:36:29] 2024-11-08 20:36:10,048 | WARNING  | GPU info not found in prmon json: 'gpu'
[2024-11-08 15:36:29] 2024-11-08 20:36:10,048 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-11-08 15:36:29] 2024-11-08 20:36:10,048 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-11-08 15:36:29] 2024-11-08 20:36:10,050 | INFO     | fitting pss+swap vs Time
[2024-11-08 15:36:29] 2024-11-08 20:36:10,051 | INFO     | model: linear, x: [1731093855.0, 1731093916.0, 1731093977.0, 1731094038.0, 1731094099.0, 1731094160.0, 1731094221.0, 1731094282.0, 1731094343.0, 1731094404.0, 1731
[2024-11-08 15:36:29] 2024-11-08 20:36:10,051 | INFO     | sum of square deviations: 101843770.0
[2024-11-08 15:36:29] 2024-11-08 20:36:10,051 | INFO     | sum of deviations: -317040668.00000006
[2024-11-08 15:36:29] 2024-11-08 20:36:10,051 | INFO     | mean x: 1731095929.0
[2024-11-08 15:36:29] 2024-11-08 20:36:10,051 | INFO     | mean y: 2879186.8695652173
[2024-11-08 15:36:29] 2024-11-08 20:36:10,052 | INFO     | -- intersect: 5391798015.210667
[2024-11-08 15:36:29] 2024-11-08 20:36:10,052 | INFO     | intersect: 5391798015.210667
[2024-11-08 15:36:29] 2024-11-08 20:36:10,052 | INFO     | chi2: 0.15252575634194354
[2024-11-08 15:36:29] 2024-11-08 20:36:10,052 | INFO     | -- intersect: 5391798015.210667
[2024-11-08 15:36:29] 2024-11-08 20:36:10,052 | INFO     | current memory leak: -3.11 B/s (using 69 data points, chi2=0.15)
[2024-11-08 15:36:29] 2024-11-08 20:36:10,053 | INFO     | ..............................
[2024-11-08 15:36:29] 2024-11-08 20:36:10,053 | INFO     | . Timing measurements:
[2024-11-08 15:36:29] 2024-11-08 20:36:10,053 | INFO     | . get job = 0 s
[2024-11-08 15:36:29] 2024-11-08 20:36:10,053 | INFO     | . initial setup = 2 s
[2024-11-08 15:36:29] 2024-11-08 20:36:10,053 | INFO     | . payload setup = 5 s
[2024-11-08 15:36:29] 2024-11-08 20:36:10,053 | INFO     | . stage-in = 0 s
[2024-11-08 15:36:29] 2024-11-08 20:36:10,054 | INFO     | . payload execution = 4614 s
[2024-11-08 15:36:29] 2024-11-08 20:36:10,054 | INFO     | . stage-out = 0 s
[2024-11-08 15:36:29] 2024-11-08 20:36:10,054 | INFO     | . log creation = 0 s
[2024-11-08 15:36:29] 2024-11-08 20:36:10,054 | INFO     | ..............................
[2024-11-08 15:36:29] 2024-11-08 20:36:10,155 | INFO     | 
[2024-11-08 15:36:29] 2024-11-08 20:36:10,156 | INFO     | job summary report
[2024-11-08 15:36:29] 2024-11-08 20:36:10,156 | INFO     | --------------------------------------------------
[2024-11-08 15:36:29] 2024-11-08 20:36:10,156 | INFO     | PanDA job id: 6395538406
[2024-11-08 15:36:29] 2024-11-08 20:36:10,156 | INFO     | task id: 41944689
[2024-11-08 15:36:29] 2024-11-08 20:36:10,156 | INFO     | errors: (none)
[2024-11-08 15:36:29] 2024-11-08 20:36:10,156 | INFO     | status: LOG_TRANSFER = DONE 
[2024-11-08 15:36:29] 2024-11-08 20:36:10,157 | INFO     | pilot state: finished 
[2024-11-08 15:36:29] 2024-11-08 20:36:10,157 | INFO     | transexitcode: 0
[2024-11-08 15:36:29] 2024-11-08 20:36:10,157 | INFO     | exeerrorcode: 0
[2024-11-08 15:36:29] 2024-11-08 20:36:10,157 | INFO     | exeerrordiag: 
[2024-11-08 15:36:29] 2024-11-08 20:36:10,157 | INFO     | exitcode: 0
[2024-11-08 15:36:29] 2024-11-08 20:36:10,157 | INFO     | exitmsg: OK
[2024-11-08 15:36:29] 2024-11-08 20:36:10,157 | INFO     | cpuconsumptiontime: 46239 s
[2024-11-08 15:36:29] 2024-11-08 20:36:10,157 | INFO     | nevents: 400
[2024-11-08 15:36:29] 2024-11-08 20:36:10,157 | INFO     | neventsw: 0
[2024-11-08 15:36:29] 2024-11-08 20:36:10,158 | INFO     | pid: 3185976
[2024-11-08 15:36:29] 2024-11-08 20:36:10,158 | INFO     | pgrp: 3185976
[2024-11-08 15:36:29] 2024-11-08 20:36:10,158 | INFO     | corecount: 12
[2024-11-08 15:36:29] 2024-11-08 20:36:10,158 | INFO     | event service: False
[2024-11-08 15:36:29] 2024-11-08 20:36:10,158 | INFO     | sizes: {0: 2404329, 1: 2404528, 5: 2404734, 11: 2404790, 4623: 2430888, 4624: 2439926, 4625: 2440110, 4629: 2440280}
[2024-11-08 15:36:29] 2024-11-08 20:36:10,158 | INFO     | --------------------------------------------------
[2024-11-08 15:36:29] 2024-11-08 20:36:10,158 | INFO     | 
[2024-11-08 15:36:29] 2024-11-08 20:36:10,158 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/2
[2024-11-08 15:36:29] 2024-11-08 20:36:10,177 | INFO     | queue jobs had 0 job(s) [purged]
[2024-11-08 15:36:29] 2024-11-08 20:36:10,177 | INFO     | queue payloads had 0 job(s) [purged]
[2024-11-08 15:36:29] 2024-11-08 20:36:10,177 | INFO     | queue data_in had 0 job(s) [purged]
[2024-11-08 15:36:29] 2024-11-08 20:36:10,178 | INFO     | queue data_out had 0 job(s) [purged]
[2024-11-08 15:36:29] 2024-11-08 20:36:10,178 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-11-08 15:36:29] 2024-11-08 20:36:10,178 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-11-08 15:36:29] 2024-11-08 20:36:10,178 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-11-08 15:36:29] 2024-11-08 20:36:10,178 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-11-08 15:36:29] 2024-11-08 20:36:10,178 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-11-08 15:36:29] 2024-11-08 20:36:10,178 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-11-08 15:36:29] 2024-11-08 20:36:10,178 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-11-08 15:36:29] 2024-11-08 20:36:10,178 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-11-08 15:36:29] 2024-11-08 20:36:10,178 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-11-08 15:36:29] 2024-11-08 20:36:10,179 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-11-08 15:36:29] 2024-11-08 20:36:10,179 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-11-08 15:36:29] 2024-11-08 20:36:10,179 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-11-08 15:36:29] 2024-11-08 20:36:10,179 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-11-08 15:36:29] 2024-11-08 20:36:10,179 | INFO     | queue completed_jobids has 1 job(s)
[2024-11-08 15:36:29] 2024-11-08 20:36:10,179 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-11-08 15:36:29] 2024-11-08 20:36:10,179 | INFO     | queue messages had 0 job(s) [purged]
[2024-11-08 15:36:29] 2024-11-08 20:36:10,179 | INFO     | job 6395538406 has completed (purged errors)
[2024-11-08 15:36:29] 2024-11-08 20:36:10,179 | INFO     | overall cleanup function is called
[2024-11-08 15:36:29] 2024-11-08 20:36:11,188 | INFO     | --- collectZombieJob: --- 10, [3185976]
[2024-11-08 15:36:29] 2024-11-08 20:36:11,188 | INFO     | zombie collector waiting for pid 3185976
[2024-11-08 15:36:29] 2024-11-08 20:36:11,188 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-11-08 15:36:29] 2024-11-08 20:36:11,188 | INFO     | collected zombie processes
[2024-11-08 15:36:29] 2024-11-08 20:36:11,188 | INFO     | will attempt to kill all subprocesses of pid=3185976
[2024-11-08 15:36:29] 2024-11-08 20:36:11,283 | INFO     | process IDs to be killed: [3185976] (in reverse order)
[2024-11-08 15:36:29] 2024-11-08 20:36:11,381 | WARNING  | found no corresponding commands to process id(s)
[2024-11-08 15:36:29] 2024-11-08 20:36:11,381 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-11-08 15:36:29] 2024-11-08 20:36:11,390 | INFO     | did not find any defunct processes belonging to 3185976
[2024-11-08 15:36:29] 2024-11-08 20:36:11,398 | INFO     | did not find any defunct processes belonging to 3185976
[2024-11-08 15:36:29] 2024-11-08 20:36:11,398 | INFO     | ready for new job
[2024-11-08 15:36:29] 2024-11-08 20:36:11,398 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-11-08 15:36:29] 2024-11-08 20:36:11,399 | INFO     | **************************************
[2024-11-08 15:36:29] 2024-11-08 20:36:11,399 | INFO     | ***  PanDA Pilot version 3.9.1.13  ***
[2024-11-08 15:36:29] 2024-11-08 20:36:11,400 | INFO     | **************************************
[2024-11-08 15:36:29] 2024-11-08 20:36:11,400 | INFO     | 
[2024-11-08 15:36:29] 2024-11-08 20:36:11,421 | INFO     | architecture information:
[2024-11-08 15:36:29] 2024-11-08 20:36:11,421 | INFO     | executing command: cat /etc/os-release
[2024-11-08 15:36:29] 2024-11-08 20:36:11,438 | INFO     | cat /etc/os-release:
[2024-11-08 15:36:29] NAME="CentOS Linux"
[2024-11-08 15:36:29] VERSION="7 (Core)"
[2024-11-08 15:36:29] ID="centos"
[2024-11-08 15:36:29] ID_LIKE="rhel fedora"
[2024-11-08 15:36:29] VERSION_ID="7"
[2024-11-08 15:36:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-11-08 15:36:29] ANSI_COLOR="0;31"
[2024-11-08 15:36:29] CPE_NAME="cpe:/o:centos:centos:7"
[2024-11-08 15:36:29] HOME_URL="https://www.centos.org/"
[2024-11-08 15:36:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-11-08 15:36:29] 
[2024-11-08 15:36:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-11-08 15:36:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-11-08 15:36:29] REDHAT_SUPPORT_PRODUCT="centos"
[2024-11-08 15:36:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-11-08 15:36:29] 
[2024-11-08 15:36:29] 2024-11-08 20:36:11,438 | INFO     | **************************************
[2024-11-08 15:36:29] 2024-11-08 20:36:11,941 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/2
[2024-11-08 15:36:29] 2024-11-08 20:36:11,962 | INFO     | sufficient remaining disk space (400405037056 B)
[2024-11-08 15:36:29] 2024-11-08 20:36:11,963 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-11-08 15:36:29] 2024-11-08 20:36:11,963 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-11-08 15:36:29] 2024-11-08 20:36:11,963 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-11-08 15:36:29] 2024-11-08 20:36:11,963 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-11-08 15:36:29] 2024-11-08 20:36:12,350 | INFO     | found 0 job(s) in 20 queues
[2024-11-08 15:36:29] 2024-11-08 20:36:12,350 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-11-08 15:36:29] 2024-11-08 20:36:12,350 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-11-08 15:36:29] 2024-11-08 20:36:12,494 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-11-08 15:36:29] 2024-11-08 20:36:12,494 | INFO     | aborting loop
[2024-11-08 15:36:29] 2024-11-08 20:36:12,670 | INFO     | all data control threads have been joined
[2024-11-08 15:36:29] 2024-11-08 20:36:12,889 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-11-08 15:36:29] 2024-11-08 20:36:12,966 | INFO     | [job] queue monitor thread has finished
[2024-11-08 15:36:29] 2024-11-08 20:36:12,966 | INFO     | [job] retrieve thread has finished
[2024-11-08 15:36:29] 2024-11-08 20:36:13,046 | INFO     | [payload] validate_post thread has finished
[2024-11-08 15:36:29] 2024-11-08 20:36:13,182 | INFO     | [payload] validate_pre thread has finished
[2024-11-08 15:36:29] 2024-11-08 20:36:13,238 | INFO     | [data] copytool_in thread has finished
[2024-11-08 15:36:29] 2024-11-08 20:36:13,316 | INFO     | all payload control threads have been joined
[2024-11-08 15:36:29] 2024-11-08 20:36:13,458 | INFO     | [payload] failed_post thread has finished
[2024-11-08 15:36:29] 2024-11-08 20:36:13,498 | INFO     | [job] job monitor thread has finished
[2024-11-08 15:36:29] 2024-11-08 20:36:13,584 | INFO     | all job control threads have been joined
[2024-11-08 15:36:29] 2024-11-08 20:36:13,602 | INFO     | [job] validate thread has finished
[2024-11-08 15:36:29] 2024-11-08 20:36:13,674 | INFO     | [data] control thread has finished
[2024-11-08 15:36:29] 2024-11-08 20:36:13,990 | INFO     | [payload] execute_payloads thread has finished
[2024-11-08 15:36:29] 2024-11-08 20:36:14,318 | INFO     | [job] create_data_payload thread has finished
[2024-11-08 15:36:29] 2024-11-08 20:36:14,318 | INFO     | [payload] control thread has finished
[2024-11-08 15:36:29] 2024-11-08 20:36:14,586 | INFO     | [job] control thread has finished
[2024-11-08 15:36:29] 2024-11-08 20:36:14,894 | INFO     | [data] copytool_out thread has finished
[2024-11-08 15:36:29] 2024-11-08 20:36:15,966 | INFO     | [data] queue_monitor thread has finished
[2024-11-08 15:36:29] 2024-11-08 20:36:22,246 | INFO     | job.realtimelogging is not enabled
[2024-11-08 15:36:29] 2024-11-08 20:36:23,251 | INFO     | [payload] run_realtimelog thread has finished
[2024-11-08 15:36:29] 2024-11-08 20:36:24,698 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140134513555264)>', '<ExcThread(monitor, started 140134062200576)>']
[2024-11-08 15:36:29] 2024-11-08 20:36:25,406 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-11-08 15:36:29] 2024-11-08 20:36:25,406 | INFO     | [monitor] control thread has ended
[2024-11-08 15:36:29] 2024-11-08 20:36:29,722 | INFO     | all workflow threads have been joined
[2024-11-08 15:36:29] 2024-11-08 20:36:29,722 | INFO     | end of generic workflow (traces error code: 0)
[2024-11-08 15:36:29] 2024-11-08 20:36:29,722 | INFO     | traces error code: 0
[2024-11-08 15:36:29] 2024-11-08 20:36:29,722 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-11-08 15:36:29] 2024-11-08 20:36:29,843 [wrapper] ==== pilot stdout END ====
[2024-11-08 15:36:29] 2024-11-08 20:36:29,845 [wrapper] ==== wrapper stdout RESUME ====
[2024-11-08 15:36:29] 2024-11-08 20:36:29,847 [wrapper] pilotpid: 3178283
[2024-11-08 15:36:29] 2024-11-08 20:36:29,849 [wrapper] Pilot exit status: 0
[2024-11-08 15:36:29] 2024-11-08 20:36:29,856 [wrapper] pandaids: 6395538406
[2024-11-08 15:36:29] 2024-11-08 20:36:29,913 [wrapper] cleanup supervisor_pilot 3374160 3178284
[2024-11-08 15:36:29] 2024-11-08 20:36:29,917 [wrapper] Test setup, not cleaning
[2024-11-08 15:36:29] 2024-11-08 20:36:29,919 [wrapper] ==== wrapper stdout END ====
[2024-11-08 15:36:29] 2024-11-08 20:36:29,921 [wrapper] ==== wrapper stderr END ====
[2024-11-08 15:36:29] 2024-11-08 20:36:29,926 [wrapper] apfmon messages muted
[2024-11-08 15:36:29]  *** Error codes and diagnostics ***
[2024-11-08 15:36:29]     "exeErrorCode": 0,
[2024-11-08 15:36:29]     "exeErrorDiag": "",
[2024-11-08 15:36:29]     "pilotErrorCode": 0,
[2024-11-08 15:36:29]     "pilotErrorDiag": "",
[2024-11-08 15:36:29]  *** Listing of results directory ***
[2024-11-08 15:36:29] total 467188
[2024-11-08 15:36:29] -rw-r--r-- 1 boinc boinc      5652 Nov  8 08:07 queuedata.json
[2024-11-08 15:36:29] -rw-r--r-- 1 boinc boinc    486088 Nov  8 08:08 pilot3.tar.gz
[2024-11-08 15:36:29] -rwx------ 1 boinc boinc     34589 Nov  8 08:10 runpilot2-wrapper.sh
[2024-11-08 15:36:29] -rw-r--r-- 1 boinc boinc       100 Nov  8 14:18 wrapper_26015_x86_64-pc-linux-gnu
[2024-11-08 15:36:29] -rwxr-xr-x 1 boinc boinc      7986 Nov  8 14:18 run_atlas
[2024-11-08 15:36:29] -rw-r--r-- 1 boinc boinc       105 Nov  8 14:18 job.xml
[2024-11-08 15:36:29] -rw-r--r-- 2 boinc boinc 267929856 Nov  8 14:18 EVNT.41944686._000106.pool.root.1
[2024-11-08 15:36:29] -rw-r--r-- 2 boinc boinc     17569 Nov  8 14:18 start_atlas.sh
[2024-11-08 15:36:29] drwxrwx--x 2 boinc boinc      4096 Nov  8 14:18 shared
[2024-11-08 15:36:29] -rw-r--r-- 2 boinc boinc    499787 Nov  8 14:18 input.tar.gz
[2024-11-08 15:36:29] -rw-r--r-- 1 boinc boinc      7599 Nov  8 14:18 init_data.xml
[2024-11-08 15:36:29] -rw-r--r-- 1 boinc boinc         0 Nov  8 14:18 boinc_lockfile
[2024-11-08 15:36:29] -rw-r--r-- 1 boinc boinc      2628 Nov  8 14:18 pandaJob.out
[2024-11-08 15:36:29] -rw------- 1 boinc boinc       460 Nov  8 14:18 setup.sh.local
[2024-11-08 15:36:29] -rw------- 1 boinc boinc   1010863 Nov  8 14:18 agis_schedconf.cvmfs.json
[2024-11-08 15:36:29] -rw------- 1 boinc boinc   1597102 Nov  8 14:18 agis_ddmendpoints.agis.ALL.json
[2024-11-08 15:36:29] drwx------ 4 boinc boinc      4096 Nov  8 14:18 pilot3
[2024-11-08 15:36:29] -rw------- 1 boinc boinc 204994639 Nov  8 15:35 HITS.41944689._002642.pool.root.1
[2024-11-08 15:36:29] -rw-r--r-- 1 boinc boinc       529 Nov  8 15:35 boinc_task_state.xml
[2024-11-08 15:36:29] -rw------- 1 boinc boinc        95 Nov  8 15:35 pilot_heartbeat.json
[2024-11-08 15:36:29] -rw------- 1 boinc boinc      1027 Nov  8 15:36 memory_monitor_summary.json
[2024-11-08 15:36:29] -rw------- 1 boinc boinc    366876 Nov  8 15:36 log.41944689._002642.job.log.tgz.1
[2024-11-08 15:36:29] -rw------- 1 boinc boinc      7717 Nov  8 15:36 heartbeat.json
[2024-11-08 15:36:29] -rw-r--r-- 1 boinc boinc      8192 Nov  8 15:36 boinc_mmap_file
[2024-11-08 15:36:29] -rw-r--r-- 1 boinc boinc        27 Nov  8 15:36 wrapper_checkpoint.txt
[2024-11-08 15:36:29] -rw------- 1 boinc boinc      4295 Nov  8 15:36 pilotlog.txt
[2024-11-08 15:36:29] -rw------- 1 boinc boinc    452727 Nov  8 15:36 log.41944689._002642.job.log.1
[2024-11-08 15:36:29] -rw------- 1 boinc boinc       357 Nov  8 15:36 output.list
[2024-11-08 15:36:29] -rw-r--r-- 1 boinc boinc       620 Nov  8 15:36 runtime_log
[2024-11-08 15:36:29] -rw------- 1 boinc boinc    839680 Nov  8 15:36 result.tar.gz
[2024-11-08 15:36:29] -rw-r--r-- 1 boinc boinc     11473 Nov  8 15:36 runtime_log.err
[2024-11-08 15:36:29] -rw------- 1 boinc boinc       650 Nov  8 15:36 40WKDmlvdT6n9Rq4apOajLDm4fhM0noT9bVorHsSDmAP7LDm6bs3yn.diag
[2024-11-08 15:36:29] -rw-r--r-- 1 boinc boinc     21083 Nov  8 15:36 stderr.txt
[2024-11-08 15:36:29] HITS file was successfully produced:
[2024-11-08 15:36:29] -rw------- 1 boinc boinc 204994639 Nov  8 15:35 shared/HITS.pool.root.1
[2024-11-08 15:36:29]  *** Contents of shared directory: ***
[2024-11-08 15:36:29] total 463184
[2024-11-08 15:36:29] -rw-r--r-- 2 boinc boinc 267929856 Nov  8 14:18 ATLAS.root_0
[2024-11-08 15:36:29] -rw-r--r-- 2 boinc boinc     17569 Nov  8 14:18 start_atlas.sh
[2024-11-08 15:36:29] -rw-r--r-- 2 boinc boinc    499787 Nov  8 14:18 input.tar.gz
[2024-11-08 15:36:29] -rw------- 1 boinc boinc 204994639 Nov  8 15:35 HITS.pool.root.1
[2024-11-08 15:36:29] -rw------- 1 boinc boinc    839680 Nov  8 15:36 result.tar.gz
15:36:31 (3174118): run_atlas exited; CPU time 46122.573412
15:36:31 (3174118): called boinc_finish(0)

</stderr_txt>
]]>

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