Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
16:51:30 (3628920): wrapper (7.7.26015): starting
16:51:30 (3628920): wrapper: running run_atlas (--nthreads 12)
[2024-11-08 16:51:30] Arguments: --nthreads 12
[2024-11-08 16:51:30] Threads: 12
[2024-11-08 16:51:30] Checking for CVMFS
[2024-11-08 16:51:30] Probing /cvmfs/atlas.cern.ch... OK
[2024-11-08 16:51:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-11-08 16:51:31] Running cvmfs_config stat atlas.cern.ch
[2024-11-08 16:51:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-11-08 16:51:31] 2.11.5.0 2308668 427 63624 139254 1 251 3412358 4194305 915 130560 0 1066556 97.728 2338470 4141 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.150.1:3128 1
[2024-11-08 16:51:31] CVMFS is ok
[2024-11-08 16:51:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-11-08 16:51:31] Checking for apptainer binary...
[2024-11-08 16:51:31] apptainer is not installed, using version from CVMFS
[2024-11-08 16:51:31] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-11-08 16:51:31] Trebeth
[2024-11-08 16:51:31] apptainer works
[2024-11-08 16:51:31] Set ATHENA_PROC_NUMBER=12
[2024-11-08 16:51:31] Set ATHENA_CORE_NUMBER=12
[2024-11-08 16:51:31] Starting ATLAS job with PandaID=6395537041
[2024-11-08 16:51:31] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-11-08 18:10:05]  *** The last 200 lines of the pilot log: ***
[2024-11-08 18:10:05]  domain=
[2024-11-08 18:10:05]  filesize=360018
[2024-11-08 18:10:05]  filetype=log
[2024-11-08 18:10:05]  guid=743acd9b-b676-4b9e-bf9e-ac35cd9fbf78
[2024-11-08 18:10:05]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-11-08 18:10:05]  is_altstaged=None
[2024-11-08 18:10:05]  is_tar=False
[2024-11-08 18:10:05]  lfn=log.41944689._002235.job.log.tgz.1
[2024-11-08 18:10:05]  mtime=0
[2024-11-08 18:10:05]  protocol_id=None
[2024-11-08 18:10:05]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-11-08 18:10:05]  replicas=None
[2024-11-08 18:10:05]  scope=mc23_13p6TeV
[2024-11-08 18:10:05]  status=None
[2024-11-08 18:10:05]  status_code=0
[2024-11-08 18:10:05]  storage_token=
[2024-11-08 18:10:05]  surl=/var/lib/boinc-client/slots/2/PanDA_Pilot-6395537041/log.41944689._002235.job.log.tgz.1
[2024-11-08 18:10:05]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2f/99/log.41944689._002235.job.log.tgz.1
[2024-11-08 18:10:05]  workdir=None
[2024-11-08 18:10:05] ]
[2024-11-08 18:10:05] 2024-11-08 23:09:48,215 | INFO     | transferring file log.41944689._002235.job.log.tgz.1 from /var/lib/boinc-client/slots/2/PanDA_Pilot-6395537041/log.41944689._002235.job.log.tgz.1 to /var/lib/boinc
[2024-11-08 18:10:05] 2024-11-08 23:09:48,215 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/2/PanDA_Pilot-6395537041/log.41944689._002235.job.log.tgz.1 /var/lib/boinc-client/slots/2/log.419446
[2024-11-08 18:10:05] 2024-11-08 23:09:48,231 | INFO     | adding to output.list: log.41944689._002235.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2f/99/log.41944689._002235.job.log.tg
[2024-11-08 18:10:05] 2024-11-08 23:09:48,232 | INFO     | alt stage-out settings: ['pl', 'pw', 'w', 'default'], is_unified=False, altstageout=False, remain_files=0, has_altstorage=True
[2024-11-08 18:10:05] 2024-11-08 23:09:48,232 | INFO     | summary of transferred files:
[2024-11-08 18:10:05] 2024-11-08 23:09:48,232 | INFO     |  -- lfn=log.41944689._002235.job.log.tgz.1, status_code=0, status=transferred
[2024-11-08 18:10:05] 2024-11-08 23:09:48,233 | INFO     | stage-out finished correctly
[2024-11-08 18:10:05] 2024-11-08 23:09:48,319 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-11-08 18:10:05] 2024-11-08 23:09:48,399 | INFO     | job 6395537041 has state=finished
[2024-11-08 18:10:05] 2024-11-08 23:09:48,399 | INFO     | preparing for final server update for job 6395537041 in state='finished'
[2024-11-08 18:10:05] 2024-11-08 23:09:48,714 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2024-11-08 18:10:05] 2024-11-08 23:09:48,715 | INFO     | this job has now completed (state=finished)
[2024-11-08 18:10:05] 2024-11-08 23:09:48,715 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-11-08 18:10:05] 2024-11-08 23:09:48,715 | INFO     | log transfer has been attempted: DONE
[2024-11-08 18:10:05] 2024-11-08 23:09:48,715 | INFO     | job 6395537041 has finished - writing final server update
[2024-11-08 18:10:05] 2024-11-08 23:09:48,715 | INFO     | total number of processed events: 400 (read)
[2024-11-08 18:10:05] 2024-11-08 23:09:48,740 | INFO     | executing command: lscpu
[2024-11-08 18:10:05] 2024-11-08 23:09:48,791 | INFO     | found 28 cores (14 cores per socket, 2 sockets)
[2024-11-08 18:10:05] 2024-11-08 23:09:48,825 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-11-08 18:10:05] 2024-11-08 23:09:50,434 | INFO     | monitor loop #366: job 0:6395537041 is in state 'finished'
[2024-11-08 18:10:05] 2024-11-08 23:09:50,434 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-11-08 18:10:05] 2024-11-08 23:09:52,240 | INFO     | CPU arch script returned: x86-64-v3
[2024-11-08 18:10:05] 2024-11-08 23:09:52,240 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-6395537041/memory_monitor_summary.json (trf name=prmon)
[2024-11-08 18:10:05] 2024-11-08 23:09:52,241 | INFO     | extracted standard info from prmon json
[2024-11-08 18:10:05] 2024-11-08 23:09:52,242 | INFO     | extracted standard memory fields from prmon json
[2024-11-08 18:10:05] 2024-11-08 23:09:52,242 | WARNING  | GPU info not found in prmon json: 'gpu'
[2024-11-08 18:10:05] 2024-11-08 23:09:52,242 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-11-08 18:10:05] 2024-11-08 23:09:52,242 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-11-08 18:10:05] 2024-11-08 23:09:52,244 | INFO     | fitting pss+swap vs Time
[2024-11-08 18:10:05] 2024-11-08 23:09:52,245 | INFO     | model: linear, x: [1731103043.0, 1731103104.0, 1731103165.0, 1731103226.0, 1731103287.0, 1731103348.0, 1731103409.0, 1731103470.0, 1731103531.0, 1731103592.0, 1731
[2024-11-08 18:10:05] 2024-11-08 23:09:52,245 | INFO     | sum of square deviations: 106336877.5
[2024-11-08 18:10:05] 2024-11-08 23:09:52,245 | INFO     | sum of deviations: 176747774.5
[2024-11-08 18:10:05] 2024-11-08 23:09:52,246 | INFO     | mean x: 1731105147.5
[2024-11-08 18:10:05] 2024-11-08 23:09:52,246 | INFO     | mean y: 2743940.5
[2024-11-08 18:10:05] 2024-11-08 23:09:52,246 | INFO     | -- intersect: -2874611398.865868
[2024-11-08 18:10:05] 2024-11-08 23:09:52,246 | INFO     | intersect: -2874611398.865868
[2024-11-08 18:10:05] 2024-11-08 23:09:52,246 | INFO     | chi2: 0.21396293692982254
[2024-11-08 18:10:05] 2024-11-08 23:09:52,246 | INFO     | -- intersect: -2874611398.865868
[2024-11-08 18:10:05] 2024-11-08 23:09:52,246 | INFO     | current memory leak: 1.66 B/s (using 70 data points, chi2=0.21)
[2024-11-08 18:10:05] 2024-11-08 23:09:52,247 | INFO     | ..............................
[2024-11-08 18:10:05] 2024-11-08 23:09:52,247 | INFO     | . Timing measurements:
[2024-11-08 18:10:05] 2024-11-08 23:09:52,247 | INFO     | . get job = 0 s
[2024-11-08 18:10:05] 2024-11-08 23:09:52,247 | INFO     | . initial setup = 15 s
[2024-11-08 18:10:05] 2024-11-08 23:09:52,247 | INFO     | . payload setup = 5 s
[2024-11-08 18:10:05] 2024-11-08 23:09:52,247 | INFO     | . stage-in = 0 s
[2024-11-08 18:10:05] 2024-11-08 23:09:52,247 | INFO     | . payload execution = 4650 s
[2024-11-08 18:10:05] 2024-11-08 23:09:52,248 | INFO     | . stage-out = 0 s
[2024-11-08 18:10:05] 2024-11-08 23:09:52,248 | INFO     | . log creation = 0 s
[2024-11-08 18:10:05] 2024-11-08 23:09:52,248 | INFO     | ..............................
[2024-11-08 18:10:05] 2024-11-08 23:09:52,326 | INFO     | 
[2024-11-08 18:10:05] 2024-11-08 23:09:52,326 | INFO     | job summary report
[2024-11-08 18:10:05] 2024-11-08 23:09:52,327 | INFO     | --------------------------------------------------
[2024-11-08 18:10:05] 2024-11-08 23:09:52,327 | INFO     | PanDA job id: 6395537041
[2024-11-08 18:10:05] 2024-11-08 23:09:52,327 | INFO     | task id: 41944689
[2024-11-08 18:10:05] 2024-11-08 23:09:52,327 | INFO     | errors: (none)
[2024-11-08 18:10:05] 2024-11-08 23:09:52,327 | INFO     | status: LOG_TRANSFER = DONE 
[2024-11-08 18:10:05] 2024-11-08 23:09:52,327 | INFO     | pilot state: finished 
[2024-11-08 18:10:05] 2024-11-08 23:09:52,327 | INFO     | transexitcode: 0
[2024-11-08 18:10:05] 2024-11-08 23:09:52,327 | INFO     | exeerrorcode: 0
[2024-11-08 18:10:05] 2024-11-08 23:09:52,328 | INFO     | exeerrordiag: 
[2024-11-08 18:10:05] 2024-11-08 23:09:52,328 | INFO     | exitcode: 0
[2024-11-08 18:10:05] 2024-11-08 23:09:52,328 | INFO     | exitmsg: OK
[2024-11-08 18:10:05] 2024-11-08 23:09:52,328 | INFO     | cpuconsumptiontime: 45319 s
[2024-11-08 18:10:05] 2024-11-08 23:09:52,328 | INFO     | nevents: 400
[2024-11-08 18:10:05] 2024-11-08 23:09:52,328 | INFO     | neventsw: 0
[2024-11-08 18:10:05] 2024-11-08 23:09:52,328 | INFO     | pid: 3641110
[2024-11-08 18:10:05] 2024-11-08 23:09:52,328 | INFO     | pgrp: 3641110
[2024-11-08 18:10:05] 2024-11-08 23:09:52,328 | INFO     | corecount: 12
[2024-11-08 18:10:05] 2024-11-08 23:09:52,328 | INFO     | event service: False
[2024-11-08 18:10:05] 2024-11-08 23:09:52,329 | INFO     | sizes: {0: 2404498, 4: 2404704, 11: 2404732, 4659: 2430856, 4660: 2439950, 4664: 2440064}
[2024-11-08 18:10:05] 2024-11-08 23:09:52,329 | INFO     | --------------------------------------------------
[2024-11-08 18:10:05] 2024-11-08 23:09:52,329 | INFO     | 
[2024-11-08 18:10:05] 2024-11-08 23:09:52,329 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/2
[2024-11-08 18:10:05] 2024-11-08 23:09:52,349 | INFO     | queue jobs had 0 job(s) [purged]
[2024-11-08 18:10:05] 2024-11-08 23:09:52,350 | INFO     | queue payloads had 0 job(s) [purged]
[2024-11-08 18:10:05] 2024-11-08 23:09:52,350 | INFO     | queue data_in had 0 job(s) [purged]
[2024-11-08 18:10:05] 2024-11-08 23:09:52,350 | INFO     | queue data_out had 0 job(s) [purged]
[2024-11-08 18:10:05] 2024-11-08 23:09:52,350 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-11-08 18:10:05] 2024-11-08 23:09:52,350 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-11-08 18:10:05] 2024-11-08 23:09:52,350 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-11-08 18:10:05] 2024-11-08 23:09:52,351 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-11-08 18:10:05] 2024-11-08 23:09:52,351 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-11-08 18:10:05] 2024-11-08 23:09:52,351 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-11-08 18:10:05] 2024-11-08 23:09:52,351 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-11-08 18:10:05] 2024-11-08 23:09:52,351 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-11-08 18:10:05] 2024-11-08 23:09:52,351 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-11-08 18:10:05] 2024-11-08 23:09:52,351 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-11-08 18:10:05] 2024-11-08 23:09:52,351 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-11-08 18:10:05] 2024-11-08 23:09:52,352 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-11-08 18:10:05] 2024-11-08 23:09:52,352 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-11-08 18:10:05] 2024-11-08 23:09:52,352 | INFO     | queue completed_jobids has 1 job(s)
[2024-11-08 18:10:05] 2024-11-08 23:09:52,352 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-11-08 18:10:05] 2024-11-08 23:09:52,352 | INFO     | queue messages had 0 job(s) [purged]
[2024-11-08 18:10:05] 2024-11-08 23:09:52,352 | INFO     | job 6395537041 has completed (purged errors)
[2024-11-08 18:10:05] 2024-11-08 23:09:52,352 | INFO     | overall cleanup function is called
[2024-11-08 18:10:05] 2024-11-08 23:09:53,362 | INFO     | --- collectZombieJob: --- 10, [3641110]
[2024-11-08 18:10:05] 2024-11-08 23:09:53,362 | INFO     | zombie collector waiting for pid 3641110
[2024-11-08 18:10:05] 2024-11-08 23:09:53,362 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-11-08 18:10:05] 2024-11-08 23:09:53,362 | INFO     | collected zombie processes
[2024-11-08 18:10:05] 2024-11-08 23:09:53,362 | INFO     | will attempt to kill all subprocesses of pid=3641110
[2024-11-08 18:10:05] 2024-11-08 23:09:53,502 | INFO     | process IDs to be killed: [3641110] (in reverse order)
[2024-11-08 18:10:05] 2024-11-08 23:09:53,604 | WARNING  | found no corresponding commands to process id(s)
[2024-11-08 18:10:05] 2024-11-08 23:09:53,605 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-11-08 18:10:05] 2024-11-08 23:09:53,614 | INFO     | did not find any defunct processes belonging to 3641110
[2024-11-08 18:10:05] 2024-11-08 23:09:53,624 | INFO     | did not find any defunct processes belonging to 3641110
[2024-11-08 18:10:05] 2024-11-08 23:09:53,624 | INFO     | ready for new job
[2024-11-08 18:10:05] 2024-11-08 23:09:53,624 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-11-08 18:10:05] 2024-11-08 23:09:53,626 | INFO     | **************************************
[2024-11-08 18:10:05] 2024-11-08 23:09:53,626 | INFO     | ***  PanDA Pilot version 3.9.1.13  ***
[2024-11-08 18:10:05] 2024-11-08 23:09:53,626 | INFO     | **************************************
[2024-11-08 18:10:05] 2024-11-08 23:09:53,626 | INFO     | 
[2024-11-08 18:10:05] 2024-11-08 23:09:53,648 | INFO     | architecture information:
[2024-11-08 18:10:05] 2024-11-08 23:09:53,649 | INFO     | executing command: cat /etc/os-release
[2024-11-08 18:10:05] 2024-11-08 23:09:53,670 | INFO     | cat /etc/os-release:
[2024-11-08 18:10:05] NAME="CentOS Linux"
[2024-11-08 18:10:05] VERSION="7 (Core)"
[2024-11-08 18:10:05] ID="centos"
[2024-11-08 18:10:05] ID_LIKE="rhel fedora"
[2024-11-08 18:10:05] VERSION_ID="7"
[2024-11-08 18:10:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-11-08 18:10:05] ANSI_COLOR="0;31"
[2024-11-08 18:10:05] CPE_NAME="cpe:/o:centos:centos:7"
[2024-11-08 18:10:05] HOME_URL="https://www.centos.org/"
[2024-11-08 18:10:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-11-08 18:10:05] 
[2024-11-08 18:10:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-11-08 18:10:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-11-08 18:10:05] REDHAT_SUPPORT_PRODUCT="centos"
[2024-11-08 18:10:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-11-08 18:10:05] 
[2024-11-08 18:10:05] 2024-11-08 23:09:53,670 | INFO     | **************************************
[2024-11-08 18:10:05] 2024-11-08 23:09:54,173 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/2
[2024-11-08 18:10:05] 2024-11-08 23:09:54,195 | INFO     | sufficient remaining disk space (399126822912 B)
[2024-11-08 18:10:05] 2024-11-08 23:09:54,195 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-11-08 18:10:05] 2024-11-08 23:09:54,195 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-11-08 18:10:05] 2024-11-08 23:09:54,196 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-11-08 18:10:05] 2024-11-08 23:09:54,196 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-11-08 18:10:05] 2024-11-08 23:09:54,197 | INFO     | found 0 job(s) in 20 queues
[2024-11-08 18:10:05] 2024-11-08 23:09:54,197 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-11-08 18:10:05] 2024-11-08 23:09:54,197 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-11-08 18:10:05] 2024-11-08 23:09:54,198 | INFO     | aborting loop
[2024-11-08 18:10:05] 2024-11-08 23:09:54,197 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-11-08 18:10:05] 2024-11-08 23:09:54,198 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-11-08 18:10:05] 2024-11-08 23:09:54,262 | INFO     | all data control threads have been joined
[2024-11-08 18:10:05] 2024-11-08 23:09:54,309 | INFO     | all job control threads have been joined
[2024-11-08 18:10:05] 2024-11-08 23:09:54,405 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-11-08 18:10:05] 2024-11-08 23:09:55,198 | INFO     | [job] retrieve thread has finished
[2024-11-08 18:10:05] 2024-11-08 23:09:55,198 | INFO     | [job] queue monitor thread has finished
[2024-11-08 18:10:05] 2024-11-08 23:09:55,202 | INFO     | [job] job monitor thread has finished
[2024-11-08 18:10:05] 2024-11-08 23:09:55,266 | INFO     | [data] control thread has finished
[2024-11-08 18:10:05] 2024-11-08 23:09:55,314 | INFO     | [job] control thread has finished
[2024-11-08 18:10:05] 2024-11-08 23:09:55,486 | INFO     | [data] copytool_in thread has finished
[2024-11-08 18:10:05] 2024-11-08 23:09:55,652 | INFO     | all payload control threads have been joined
[2024-11-08 18:10:05] 2024-11-08 23:09:55,762 | INFO     | [job] validate thread has finished
[2024-11-08 18:10:05] 2024-11-08 23:09:55,842 | INFO     | [job] create_data_payload thread has finished
[2024-11-08 18:10:05] 2024-11-08 23:09:55,866 | INFO     | [payload] failed_post thread has finished
[2024-11-08 18:10:05] 2024-11-08 23:09:55,942 | INFO     | [payload] validate_pre thread has finished
[2024-11-08 18:10:05] 2024-11-08 23:09:55,950 | INFO     | [payload] execute_payloads thread has finished
[2024-11-08 18:10:05] 2024-11-08 23:09:56,202 | INFO     | [data] copytool_out thread has finished
[2024-11-08 18:10:05] 2024-11-08 23:09:56,444 | INFO     | [payload] run_realtimelog thread has finished
[2024-11-08 18:10:05] 2024-11-08 23:09:56,538 | INFO     | [payload] validate_post thread has finished
[2024-11-08 18:10:05] 2024-11-08 23:09:56,654 | INFO     | [payload] control thread has finished
[2024-11-08 18:10:05] 2024-11-08 23:09:58,410 | INFO     | [data] queue_monitor thread has finished
[2024-11-08 18:10:05] 2024-11-08 23:09:59,730 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140437220349760)>', '<ExcThread(monitor, started 140436496705280)>']
[2024-11-08 18:10:05] 2024-11-08 23:10:00,223 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-11-08 18:10:05] 2024-11-08 23:10:00,223 | INFO     | [monitor] control thread has ended
[2024-11-08 18:10:05] 2024-11-08 23:10:04,754 | INFO     | all workflow threads have been joined
[2024-11-08 18:10:05] 2024-11-08 23:10:04,754 | INFO     | end of generic workflow (traces error code: 0)
[2024-11-08 18:10:05] 2024-11-08 23:10:04,754 | INFO     | traces error code: 0
[2024-11-08 18:10:05] 2024-11-08 23:10:04,754 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-11-08 18:10:05] 2024-11-08 23:10:04,894 [wrapper] ==== pilot stdout END ====
[2024-11-08 18:10:05] 2024-11-08 23:10:04,896 [wrapper] ==== wrapper stdout RESUME ====
[2024-11-08 18:10:05] 2024-11-08 23:10:04,898 [wrapper] pilotpid: 3633032
[2024-11-08 18:10:05] 2024-11-08 23:10:04,901 [wrapper] Pilot exit status: 0
[2024-11-08 18:10:05] 2024-11-08 23:10:04,909 [wrapper] pandaids: 6395537041
[2024-11-08 18:10:05] 2024-11-08 23:10:04,967 [wrapper] cleanup supervisor_pilot 3837130 3633033
[2024-11-08 18:10:05] 2024-11-08 23:10:04,970 [wrapper] Test setup, not cleaning
[2024-11-08 18:10:05] 2024-11-08 23:10:04,972 [wrapper] ==== wrapper stdout END ====
[2024-11-08 18:10:05] 2024-11-08 23:10:04,975 [wrapper] ==== wrapper stderr END ====
[2024-11-08 18:10:05] 2024-11-08 23:10:04,980 [wrapper] apfmon messages muted
[2024-11-08 18:10:05]  *** Error codes and diagnostics ***
[2024-11-08 18:10:05]     "exeErrorCode": 0,
[2024-11-08 18:10:05]     "exeErrorDiag": "",
[2024-11-08 18:10:05]     "pilotErrorCode": 0,
[2024-11-08 18:10:05]     "pilotErrorDiag": "",
[2024-11-08 18:10:05]  *** Listing of results directory ***
[2024-11-08 18:10:05] total 464768
[2024-11-08 18:10:05] -rw-r--r-- 1 boinc boinc    486088 Nov  8 07:50 pilot3.tar.gz
[2024-11-08 18:10:05] -rw-r--r-- 1 boinc boinc      5652 Nov  8 07:56 queuedata.json
[2024-11-08 18:10:05] -rwx------ 1 boinc boinc     34589 Nov  8 07:56 runpilot2-wrapper.sh
[2024-11-08 18:10:05] -rw-r--r-- 1 boinc boinc       100 Nov  8 16:51 wrapper_26015_x86_64-pc-linux-gnu
[2024-11-08 18:10:05] -rwxr-xr-x 1 boinc boinc      7986 Nov  8 16:51 run_atlas
[2024-11-08 18:10:05] -rw-r--r-- 1 boinc boinc       105 Nov  8 16:51 job.xml
[2024-11-08 18:10:05] -rw-r--r-- 2 boinc boinc     17569 Nov  8 16:51 start_atlas.sh
[2024-11-08 18:10:05] drwxrwx--x 2 boinc boinc      4096 Nov  8 16:51 shared
[2024-11-08 18:10:05] -rw-r--r-- 2 boinc boinc    499785 Nov  8 16:51 input.tar.gz
[2024-11-08 18:10:05] -rw-r--r-- 1 boinc boinc      7599 Nov  8 16:51 init_data.xml
[2024-11-08 18:10:05] -rw-r--r-- 2 boinc boinc 265400633 Nov  8 16:51 EVNT.41944686._000028.pool.root.1
[2024-11-08 18:10:05] -rw-r--r-- 1 boinc boinc         0 Nov  8 16:51 boinc_lockfile
[2024-11-08 18:10:05] -rw-r--r-- 1 boinc boinc      2627 Nov  8 16:51 pandaJob.out
[2024-11-08 18:10:05] -rw------- 1 boinc boinc       460 Nov  8 16:51 setup.sh.local
[2024-11-08 18:10:05] -rw------- 1 boinc boinc   1010855 Nov  8 16:51 agis_schedconf.cvmfs.json
[2024-11-08 18:10:05] -rw------- 1 boinc boinc   1597102 Nov  8 16:51 agis_ddmendpoints.agis.ALL.json
[2024-11-08 18:10:05] drwx------ 4 boinc boinc      4096 Nov  8 16:51 pilot3
[2024-11-08 18:10:05] -rw-r--r-- 1 boinc boinc       529 Nov  8 18:09 boinc_task_state.xml
[2024-11-08 18:10:05] -rw------- 1 boinc boinc 205047730 Nov  8 18:09 HITS.41944689._002235.pool.root.1
[2024-11-08 18:10:05] -rw------- 1 boinc boinc      1026 Nov  8 18:09 memory_monitor_summary.json
[2024-11-08 18:10:05] -rw------- 1 boinc boinc    360018 Nov  8 18:09 log.41944689._002235.job.log.tgz.1
[2024-11-08 18:10:05] -rw------- 1 boinc boinc        95 Nov  8 18:09 pilot_heartbeat.json
[2024-11-08 18:10:05] -rw------- 1 boinc boinc      7715 Nov  8 18:09 heartbeat.json
[2024-11-08 18:10:05] -rw-r--r-- 1 boinc boinc        27 Nov  8 18:10 wrapper_checkpoint.txt
[2024-11-08 18:10:05] -rw-r--r-- 1 boinc boinc      8192 Nov  8 18:10 boinc_mmap_file
[2024-11-08 18:10:05] -rw------- 1 boinc boinc      4346 Nov  8 18:10 pilotlog.txt
[2024-11-08 18:10:05] -rw------- 1 boinc boinc    457752 Nov  8 18:10 log.41944689._002235.job.log.1
[2024-11-08 18:10:05] -rw------- 1 boinc boinc       357 Nov  8 18:10 output.list
[2024-11-08 18:10:05] -rw-r--r-- 1 boinc boinc       620 Nov  8 18:10 runtime_log
[2024-11-08 18:10:05] -rw------- 1 boinc boinc    839680 Nov  8 18:10 result.tar.gz
[2024-11-08 18:10:05] -rw-r--r-- 1 boinc boinc     11473 Nov  8 18:10 runtime_log.err
[2024-11-08 18:10:05] -rw------- 1 boinc boinc       649 Nov  8 18:10 ldDLDmtidT6n9Rq4apOajLDm4fhM0noT9bVorHsSDmqM7LDmvcP35n.diag
[2024-11-08 18:10:05] -rw-r--r-- 1 boinc boinc     20907 Nov  8 18:10 stderr.txt
[2024-11-08 18:10:05] HITS file was successfully produced:
[2024-11-08 18:10:05] -rw------- 1 boinc boinc 205047730 Nov  8 18:09 shared/HITS.pool.root.1
[2024-11-08 18:10:05]  *** Contents of shared directory: ***
[2024-11-08 18:10:05] total 460768
[2024-11-08 18:10:05] -rw-r--r-- 2 boinc boinc     17569 Nov  8 16:51 start_atlas.sh
[2024-11-08 18:10:05] -rw-r--r-- 2 boinc boinc    499785 Nov  8 16:51 input.tar.gz
[2024-11-08 18:10:05] -rw-r--r-- 2 boinc boinc 265400633 Nov  8 16:51 ATLAS.root_0
[2024-11-08 18:10:05] -rw------- 1 boinc boinc 205047730 Nov  8 18:09 HITS.pool.root.1
[2024-11-08 18:10:05] -rw------- 1 boinc boinc    839680 Nov  8 18:10 result.tar.gz
18:10:06 (3628920): run_atlas exited; CPU time 45159.120802
18:10:06 (3628920): called boinc_finish(0)

</stderr_txt>
]]>

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