Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2024-11-08 11:22:58 (2458076): Detected: vboxwrapper 26206
2024-11-08 11:22:58 (2458076): Detected: BOINC client v8.0.4
2024-11-08 11:22:58 (2458076): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2024-11-08 11:22:58 (2458076): Successfully copied 'init_data.xml' to the shared directory.
2024-11-08 11:22:58 (2458076): Create VM. (boinc_25b873dcd5a68006, slot#0)
2024-11-08 11:22:58 (2458076): Setting Memory Size for VM. (4600MB)
2024-11-08 11:22:58 (2458076): Setting CPU Count for VM. (6)
2024-11-08 11:22:58 (2458076): Setting Chipset Options for VM.
2024-11-08 11:22:58 (2458076): Setting Graphics Controller Options for VM.
2024-11-08 11:22:58 (2458076): Setting Boot Options for VM.
2024-11-08 11:22:58 (2458076): Setting Network Configuration for NAT.
2024-11-08 11:22:58 (2458076): Enabling VM Network Access.
2024-11-08 11:22:58 (2458076): Disabling USB Support for VM.
2024-11-08 11:22:58 (2458076): Disabling COM Port Support for VM.
2024-11-08 11:22:58 (2458076): Disabling LPT Port Support for VM.
2024-11-08 11:22:58 (2458076): Disabling Audio Support for VM.
2024-11-08 11:22:58 (2458076): Disabling Clipboard Support for VM.
2024-11-08 11:22:58 (2458076): Disabling Drag and Drop Support for VM.
2024-11-08 11:22:58 (2458076): Adding storage controller(s) to VM.
2024-11-08 11:22:58 (2458076): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-11-08 11:22:59 (2458076): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-11-08 11:22:59 (2458076): forwarding host port 55495 to guest port 80
2024-11-08 11:23:00 (2458076): Enabling remote desktop for VM.
2024-11-08 11:23:00 (2458076): Required extension pack not installed, remote desktop not enabled.
2024-11-08 11:23:00 (2458076): Enabling shared directory for VM.
2024-11-08 11:23:00 (2458076): Starting VM using VBoxManage interface. (boinc_25b873dcd5a68006, slot#0)
2024-11-08 11:23:01 (2458076): Successfully started VM. (PID = '2458331')
2024-11-08 11:23:01 (2458076): Reporting VM Process ID to BOINC.
2024-11-08 11:23:01 (2458076): Guest Log: BIOS: VirtualBox 7.1.4
2024-11-08 11:23:01 (2458076): Guest Log: CPUID EDX: 0x178bfbff
2024-11-08 11:23:01 (2458076): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-11-08 11:23:01 (2458076): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-11-08 11:23:01 (2458076): VM state change detected. (old = 'poweredoff', new = 'running')
2024-11-08 11:23:01 (2458076): Detected: Web Application Enabled (http://localhost:55495)
2024-11-08 11:23:01 (2458076): Preference change detected
2024-11-08 11:23:01 (2458076): Setting CPU throttle for VM. (50%)
2024-11-08 11:23:01 (2458076): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-11-08 11:23:03 (2458076): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-11-08 11:23:03 (2458076): Guest Log: BIOS: Booting from Hard Disk...
2024-11-08 11:23:06 (2458076): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-11-08 11:23:06 (2458076): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-11-08 11:23:06 (2458076): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-11-08 11:23:06 (2458076): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-11-08 11:23:06 (2458076): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-11-08 11:23:06 (2458076): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-11-08 11:23:06 (2458076): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-11-08 11:23:06 (2458076): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-11-08 11:23:06 (2458076): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-11-08 11:23:06 (2458076): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-11-08 11:23:06 (2458076): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-11-08 11:23:06 (2458076): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-11-08 11:23:06 (2458076): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-11-08 11:23:06 (2458076): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-11-08 11:23:06 (2458076): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-11-08 11:23:06 (2458076): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-11-08 11:23:06 (2458076): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-11-08 11:23:06 (2458076): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-11-08 11:23:06 (2458076): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-11-08 11:23:06 (2458076): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-11-08 11:23:06 (2458076): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-11-08 11:23:06 (2458076): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-11-08 11:23:06 (2458076): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-11-08 11:23:06 (2458076): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-11-08 11:23:06 (2458076): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-11-08 11:23:06 (2458076): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-11-08 11:23:06 (2458076): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-11-08 11:23:06 (2458076): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-11-08 11:23:06 (2458076): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-11-08 11:23:06 (2458076): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-11-08 11:23:06 (2458076): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-11-08 11:23:06 (2458076): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-11-08 11:23:13 (2458076): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-11-08 11:23:13 (2458076): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-11-08 11:23:19 (2458076): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-11-08 11:23:19 (2458076): Guest Log: 00:00:00.000103 main     Log opened 2024-11-08T10:23:16.782314000Z
2024-11-08 11:23:19 (2458076): Guest Log: 00:00:00.000164 main     OS Product: Linux
2024-11-08 11:23:19 (2458076): Guest Log: 00:00:00.000177 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-11-08 11:23:19 (2458076): Guest Log: 00:00:00.000188 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-11-08 11:23:19 (2458076): Guest Log: 00:00:00.000202 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-11-08 11:23:19 (2458076): Guest Log: 00:00:00.000202 main     Process ID: 1334
2024-11-08 11:23:19 (2458076): Guest Log: 00:00:00.000203 main     Package type: LINUX_64BITS_GENERIC
2024-11-08 11:23:19 (2458076): Guest Log: 00:00:00.000773 main     5.2.32 r132073 started. Verbose level = 0
2024-11-08 11:23:19 (2458076): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-11-08 11:23:19 (2458076): Guest Log: [INFO] Mounting shared directory
2024-11-08 11:23:19 (2458076): Guest Log: [INFO] Checking for init_data.xml
2024-11-08 11:23:21 (2458076): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-11-08 11:23:21 (2458076): Guest Log: [INFO] Detected branch: prod
2024-11-08 11:23:22 (2458076): Guest Log: This is the prod version of the ATLAS job wrapper
2024-11-08 11:23:22 (2458076): Guest Log: Copying input files
2024-11-08 11:23:23 (2458076): Guest Log: Copied input files into RunAtlas.
2024-11-08 11:23:23 (2458076): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-11-08 11:23:23 (2458076): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-11-08 11:23:23 (2458076): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-11-08 11:23:23 (2458076): Guest Log: Further information can be found at the LHC@home message board.
2024-11-08 11:23:29 (2458076): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-11-08 11:23:29 (2458076): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-11-08 11:23:29 (2458076): Guest Log: 2.6.3.0 1609 0 30256 139237 4 1 3117281 4096000 0 65024 0 0 n/a 1 1 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
2024-11-08 11:23:30 (2458076): Guest Log: copied the webapp to /var/www
2024-11-08 11:23:30 (2458076): Guest Log: ATHENA_PROC_NUMBER=6
2024-11-08 11:23:30 (2458076): Guest Log: ATHENA_CORE_NUMBER=6
2024-11-08 11:23:30 (2458076): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-11-08 11:23:30 (2458076): Guest Log:  *** Starting ATLAS job. (PandaID=6395395697 taskID=41944661) ***
2024-11-08 13:02:01 (2458076): Status Report: Elapsed Time: '6000.000000'
2024-11-08 13:02:01 (2458076): Status Report: CPU Time: '14221.180000'
2024-11-08 13:51:32 (2458076): Guest Log:  *** Job finished ***
2024-11-08 13:51:32 (2458076): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-11-08 13:51:32 (2458076): Guest Log: 2024-11-08 12:51:19,735 | INFO     | [data] copytool_out thread has finished
2024-11-08 13:51:32 (2458076): Guest Log: 2024-11-08 12:51:20,741 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2024-11-08 13:51:32 (2458076): Guest Log: 2024-11-08 12:51:24,902 | INFO     | [data] queue_monitor thread has finished
2024-11-08 13:51:32 (2458076): Guest Log: 2024-11-08 12:51:26,980 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139880613717824)>', '<ExcThread(monitor, started 139879887394560)>']
2024-11-08 13:51:32 (2458076): Guest Log: 2024-11-08 12:51:27,616 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-11-08 13:51:32 (2458076): Guest Log: 2024-11-08 12:51:27,616 | INFO     | [monitor] control thread has ended
2024-11-08 13:51:32 (2458076): Guest Log: 2024-11-08 12:51:31,988 | INFO     | all workflow threads have been joined
2024-11-08 13:51:32 (2458076): Guest Log: 2024-11-08 12:51:31,988 | INFO     | end of generic workflow (traces error code: 0)
2024-11-08 13:51:32 (2458076): Guest Log: 2024-11-08 12:51:31,988 | INFO     | traces error code: 0
2024-11-08 13:51:32 (2458076): Guest Log: 2024-11-08 12:51:31,989 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-11-08 13:51:32 (2458076): Guest Log: 2024-11-08 12:51:32,039 [wrapper] ==== pilot stdout END ====
2024-11-08 13:51:32 (2458076): Guest Log: 2024-11-08 12:51:32,042 [wrapper] ==== wrapper stdout RESUME ====
2024-11-08 13:51:32 (2458076): Guest Log: 2024-11-08 12:51:32,045 [wrapper] pilotpid: 5962
2024-11-08 13:51:32 (2458076): Guest Log: 2024-11-08 12:51:32,047 [wrapper] Pilot exit status: 0
2024-11-08 13:51:32 (2458076): Guest Log: 2024-11-08 12:51:32,099 [wrapper] pandaids: 6395395697
2024-11-08 13:51:32 (2458076): Guest Log: 2024-11-08 12:51:32,116 [wrapper] cleanup supervisor_pilot  7197 5963
2024-11-08 13:51:32 (2458076): Guest Log: 2024-11-08 12:51:32,119 [wrapper] Test setup, not cleaning
2024-11-08 13:51:32 (2458076): Guest Log: 2024-11-08 12:51:32,122 [wrapper] ==== wrapper stdout END ====
2024-11-08 13:51:32 (2458076): Guest Log: 2024-11-08 12:51:32,125 [wrapper] ==== wrapper stderr END ====
2024-11-08 13:51:32 (2458076): Guest Log: 2024-11-08 12:51:32,130 [wrapper] apfmon messages muted
2024-11-08 13:51:32 (2458076): Guest Log:  *** Error codes and diagnostics ***
2024-11-08 13:51:32 (2458076): Guest Log:     "exeErrorCode": 0,
2024-11-08 13:51:32 (2458076): Guest Log:     "exeErrorDiag": "",
2024-11-08 13:51:32 (2458076): Guest Log:     "pilotErrorCode": 0,
2024-11-08 13:51:32 (2458076): Guest Log:     "pilotErrorDiag": "",
2024-11-08 13:51:32 (2458076): Guest Log:  *** Listing of results directory ***
2024-11-08 13:51:32 (2458076): Guest Log: total 233116
2024-11-08 13:51:32 (2458076): Guest Log: -rw-r--r--. 1 atlas atlas    486088 Nov  8 08:47 pilot3.tar.gz
2024-11-08 13:51:32 (2458076): Guest Log: -rwx------. 1 atlas atlas     34589 Nov  8 08:48 runpilot2-wrapper.sh
2024-11-08 13:51:32 (2458076): Guest Log: -rw-r--r--. 1 atlas atlas      5652 Nov  8 08:56 queuedata.json
2024-11-08 13:51:32 (2458076): Guest Log: -rw-r--r--. 1 atlas atlas      6886 Nov  8 10:23 init_data.xml
2024-11-08 13:51:32 (2458076): Guest Log: -rw-r--r--. 1 atlas atlas     17569 Nov  8 10:23 start_atlas.sh
2024-11-08 13:51:32 (2458076): Guest Log: -rw-r--r--. 1 atlas atlas    499789 Nov  8 10:23 input.tar.gz
2024-11-08 13:51:32 (2458076): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov  8 10:23 EVNT.41944655._000068.pool.root.1 -> /data/./ATLAS.root_0
2024-11-08 13:51:32 (2458076): Guest Log: -rw-r--r--. 1 atlas atlas      2628 Nov  8 10:23 pandaJob.out
2024-11-08 13:51:32 (2458076): Guest Log: -rw-------. 1 atlas atlas       424 Nov  8 10:23 setup.sh.local
2024-11-08 13:51:32 (2458076): Guest Log: -rw-------. 1 atlas atlas   1016260 Nov  8 10:23 agis_schedconf.cvmfs.json
2024-11-08 13:51:32 (2458076): Guest Log: -rw-------. 1 atlas atlas   1597102 Nov  8 10:23 agis_ddmendpoints.agis.ALL.json
2024-11-08 13:51:32 (2458076): Guest Log: drwx------. 4 atlas atlas      4096 Nov  8 10:24 pilot3
2024-11-08 13:51:32 (2458076): Guest Log: -rw-------. 1 atlas atlas 233345191 Nov  8 12:50 HITS.41944661._001684.pool.root.1
2024-11-08 13:51:32 (2458076): Guest Log: -rw-------. 1 atlas atlas      1041 Nov  8 12:51 memory_monitor_summary.json
2024-11-08 13:51:32 (2458076): Guest Log: -rw-------. 1 atlas atlas    284468 Nov  8 12:51 log.41944661._001684.job.log.tgz.1
2024-11-08 13:51:32 (2458076): Guest Log: -rw-------. 1 atlas atlas        95 Nov  8 12:51 pilot_heartbeat.json
2024-11-08 13:51:32 (2458076): Guest Log: -rw-------. 1 atlas atlas      7729 Nov  8 12:51 heartbeat.json
2024-11-08 13:51:32 (2458076): Guest Log: -rw-------. 1 atlas atlas      4275 Nov  8 12:51 pilotlog.txt
2024-11-08 13:51:32 (2458076): Guest Log: -rw-------. 1 atlas atlas    511299 Nov  8 12:51 log.41944661._001684.job.log.1
2024-11-08 13:51:32 (2458076): Guest Log: -rw-------. 1 atlas atlas       357 Nov  8 12:51 output.list
2024-11-08 13:51:32 (2458076): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov  8 12:51 runtime_log
2024-11-08 13:51:32 (2458076): Guest Log: -rw-------. 1 atlas atlas    819200 Nov  8 12:51 result.tar.gz
2024-11-08 13:51:32 (2458076): Guest Log: -rw-r--r--. 1 atlas atlas     11030 Nov  8 12:51 runtime_log.err
2024-11-08 13:51:32 (2458076): Guest Log: -rw-------. 1 atlas atlas       686 Nov  8 12:51 EvCMDmfqZT6n7OlckoGmwREmGgkVDo1bjSoqOlfODmMqnLDmr3Wn6m.diag
2024-11-08 13:51:32 (2458076): Guest Log: Looking for outputfile HITS.41944661._001684.pool.root.1
2024-11-08 13:51:32 (2458076): Guest Log: HITS file was successfully produced
2024-11-08 13:51:32 (2458076): Guest Log: -rw-------. 1 atlas atlas 233345191 Nov  8 12:50 /home/atlas/RunAtlas/HITS.41944661._001684.pool.root.1
2024-11-08 13:51:32 (2458076): Guest Log: Successfully finished the ATLAS job!
2024-11-08 13:51:32 (2458076): Guest Log: Copying the results back to the shared directory!
2024-11-08 13:51:32 (2458076): Guest Log:  *** Contents of shared directory: ***
2024-11-08 13:51:32 (2458076): Guest Log: total 266624
2024-11-08 13:51:32 (2458076): Guest Log: -rw-r--r--. 1 root root 271665175 Nov  8 10:22 ATLAS.root_0
2024-11-08 13:51:32 (2458076): Guest Log: -rw-r--r--. 1 root root      6886 Nov  8 10:22 init_data.xml
2024-11-08 13:51:32 (2458076): Guest Log: -rw-r--r--. 1 root root    499789 Nov  8 10:22 input.tar.gz
2024-11-08 13:51:32 (2458076): Guest Log: -rw-r--r--. 1 root root    819200 Nov  8  2024 result.tar.gz
2024-11-08 13:51:32 (2458076): Guest Log: -rw-r--r--. 1 root root     17569 Nov  8 10:22 start_atlas.sh
2024-11-08 13:51:32 (2458076): Guest Log:  *** Success! Shutting down the machine. ***
2024-11-08 13:51:32 (2458076): VM Completion File Detected.
2024-11-08 13:51:32 (2458076): Powering off VM.
2024-11-08 13:51:33 (2458076): Successfully stopped VM.
2024-11-08 13:51:33 (2458076): Deregistering VM. (boinc_25b873dcd5a68006, slot#0)
2024-11-08 13:51:33 (2458076): Removing network bandwidth throttle group from VM.
2024-11-08 13:51:33 (2458076): Removing VM from VirtualBox.
13:51:38 (2458076): called boinc_finish(0)

</stderr_txt>
]]>

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