Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2024-11-08 09:47:15 (742498): Detected: vboxwrapper 26206
2024-11-08 09:47:15 (742498): Detected: BOINC client v8.0.4
2024-11-08 09:47:15 (742498): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2024-11-08 09:47:15 (742498): Successfully copied 'init_data.xml' to the shared directory.
2024-11-08 09:47:15 (742498): Create VM. (boinc_89b45624d7bd4558, slot#0)
2024-11-08 09:47:15 (742498): Setting Memory Size for VM. (4400MB)
2024-11-08 09:47:15 (742498): Setting CPU Count for VM. (4)
2024-11-08 09:47:16 (742498): Setting Chipset Options for VM.
2024-11-08 09:47:16 (742498): Setting Graphics Controller Options for VM.
2024-11-08 09:47:16 (742498): Setting Boot Options for VM.
2024-11-08 09:47:16 (742498): Setting Network Configuration for NAT.
2024-11-08 09:47:16 (742498): Enabling VM Network Access.
2024-11-08 09:47:16 (742498): Disabling USB Support for VM.
2024-11-08 09:47:16 (742498): Disabling COM Port Support for VM.
2024-11-08 09:47:17 (742498): Disabling LPT Port Support for VM.
2024-11-08 09:47:17 (742498): Disabling Audio Support for VM.
2024-11-08 09:47:17 (742498): Disabling Clipboard Support for VM.
2024-11-08 09:47:17 (742498): Disabling Drag and Drop Support for VM.
2024-11-08 09:47:17 (742498): Adding storage controller(s) to VM.
2024-11-08 09:47:17 (742498): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-11-08 09:47:20 (742498): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-11-08 09:47:20 (742498): forwarding host port 46355 to guest port 80
2024-11-08 09:47:20 (742498): Enabling remote desktop for VM.
2024-11-08 09:47:20 (742498): Required extension pack not installed, remote desktop not enabled.
2024-11-08 09:47:20 (742498): Enabling shared directory for VM.
2024-11-08 09:47:20 (742498): Starting VM using VBoxManage interface. (boinc_89b45624d7bd4558, slot#0)
2024-11-08 09:47:21 (742498): Successfully started VM. (PID = '742796')
2024-11-08 09:47:21 (742498): Reporting VM Process ID to BOINC.
2024-11-08 09:47:21 (742498): Guest Log: BIOS: VirtualBox 7.1.4
2024-11-08 09:47:21 (742498): Guest Log: CPUID EDX: 0x178bfbff
2024-11-08 09:47:21 (742498): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-11-08 09:47:21 (742498): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-11-08 09:47:21 (742498): VM state change detected. (old = 'poweredoff', new = 'running')
2024-11-08 09:47:21 (742498): Detected: Web Application Enabled (http://localhost:46355)
2024-11-08 09:47:21 (742498): Preference change detected
2024-11-08 09:47:21 (742498): Setting CPU throttle for VM. (50%)
2024-11-08 09:47:21 (742498): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-11-08 09:47:23 (742498): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-11-08 09:47:23 (742498): Guest Log: BIOS: Booting from Hard Disk...
2024-11-08 09:47:30 (742498): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-11-08 09:47:30 (742498): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-11-08 09:47:30 (742498): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-11-08 09:47:30 (742498): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-11-08 09:47:30 (742498): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-11-08 09:47:30 (742498): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-11-08 09:47:30 (742498): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-11-08 09:47:30 (742498): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-11-08 09:47:30 (742498): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-11-08 09:47:30 (742498): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-11-08 09:47:30 (742498): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-11-08 09:47:30 (742498): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-11-08 09:47:30 (742498): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-11-08 09:47:30 (742498): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-11-08 09:47:30 (742498): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-11-08 09:47:30 (742498): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-11-08 09:47:30 (742498): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-11-08 09:47:30 (742498): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-11-08 09:47:30 (742498): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-11-08 09:47:30 (742498): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-11-08 09:47:30 (742498): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-11-08 09:47:30 (742498): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-11-08 09:47:30 (742498): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-11-08 09:47:30 (742498): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-11-08 09:47:30 (742498): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-11-08 09:47:30 (742498): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-11-08 09:47:30 (742498): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-11-08 09:47:30 (742498): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-11-08 09:47:30 (742498): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-11-08 09:47:30 (742498): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-11-08 09:47:30 (742498): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-11-08 09:47:30 (742498): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-11-08 09:47:43 (742498): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-11-08 09:47:43 (742498): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-11-08 09:47:58 (742498): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-11-08 09:47:58 (742498): Guest Log: 00:00:00.000248 main     Log opened 2024-11-08T08:47:56.099767000Z
2024-11-08 09:47:58 (742498): Guest Log: 00:00:00.000411 main     OS Product: Linux
2024-11-08 09:47:58 (742498): Guest Log: 00:00:00.000457 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-11-08 09:47:58 (742498): Guest Log: 00:00:00.000534 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-11-08 09:47:58 (742498): Guest Log: 00:00:00.000576 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-11-08 09:47:58 (742498): Guest Log: 00:00:00.000577 main     Process ID: 1303
2024-11-08 09:47:58 (742498): Guest Log: 00:00:00.000578 main     Package type: LINUX_64BITS_GENERIC
2024-11-08 09:47:58 (742498): Guest Log: 00:00:00.003222 main     5.2.32 r132073 started. Verbose level = 0
2024-11-08 09:47:58 (742498): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-11-08 09:47:58 (742498): Guest Log: [INFO] Mounting shared directory
2024-11-08 09:47:58 (742498): Guest Log: [INFO] Checking for init_data.xml
2024-11-08 09:48:06 (742498): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-11-08 09:48:06 (742498): Guest Log: [INFO] Detected branch: prod
2024-11-08 09:48:07 (742498): Guest Log: This is the prod version of the ATLAS job wrapper
2024-11-08 09:48:07 (742498): Guest Log: Copying input files
2024-11-08 09:48:09 (742498): Guest Log: Copied input files into RunAtlas.
2024-11-08 09:48:09 (742498): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-11-08 09:48:09 (742498): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-11-08 09:48:09 (742498): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-11-08 09:48:09 (742498): Guest Log: Further information can be found at the LHC@home message board.
2024-11-08 09:48:18 (742498): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-11-08 09:48:18 (742498): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-11-08 09:48:18 (742498): Guest Log: 2.6.3.0 1598 0 30232 139233 3 1 3117281 4096000 0 65024 0 0 n/a 1 3 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
2024-11-08 09:48:22 (742498): Guest Log: copied the webapp to /var/www
2024-11-08 09:48:22 (742498): Guest Log: ATHENA_PROC_NUMBER=4
2024-11-08 09:48:22 (742498): Guest Log: ATHENA_CORE_NUMBER=4
2024-11-08 09:48:23 (742498): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-11-08 09:48:23 (742498): Guest Log:  *** Starting ATLAS job. (PandaID=6395392819 taskID=41944815) ***
2024-11-08 11:26:22 (742498): Status Report: Elapsed Time: '6000.000000'
2024-11-08 11:26:22 (742498): Status Report: CPU Time: '10479.710000'
2024-11-08 12:45:58 (742498): Guest Log:  *** Job finished ***
2024-11-08 12:45:58 (742498): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-11-08 12:45:58 (742498): Guest Log: 2024-11-08 11:45:44,232 | INFO     | [data] queue_monitor thread has finished
2024-11-08 12:45:58 (742498): Guest Log: 2024-11-08 11:45:48,912 | INFO     | job.realtimelogging is not enabled
2024-11-08 12:45:58 (742498): Guest Log: 2024-11-08 11:45:49,915 | INFO     | [payload] run_realtimelog thread has finished
2024-11-08 12:45:58 (742498): Guest Log: 2024-11-08 11:45:51,252 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140106375599936)>', '<ExcThread(monitor, started 140105608042240)>']
2024-11-08 12:45:58 (742498): Guest Log: 2024-11-08 11:45:51,597 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-11-08 12:45:58 (742498): Guest Log: 2024-11-08 11:45:51,597 | INFO     | [monitor] control thread has ended
2024-11-08 12:45:58 (742498): Guest Log: 2024-11-08 11:45:56,259 | INFO     | all workflow threads have been joined
2024-11-08 12:45:58 (742498): Guest Log: 2024-11-08 11:45:56,259 | INFO     | end of generic workflow (traces error code: 0)
2024-11-08 12:45:58 (742498): Guest Log: 2024-11-08 11:45:56,260 | INFO     | traces error code: 0
2024-11-08 12:45:58 (742498): Guest Log: 2024-11-08 11:45:56,260 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-11-08 12:45:58 (742498): Guest Log: 2024-11-08 11:45:56,852 [wrapper] ==== pilot stdout END ====
2024-11-08 12:45:58 (742498): Guest Log: 2024-11-08 11:45:56,870 [wrapper] ==== wrapper stdout RESUME ====
2024-11-08 12:45:58 (742498): Guest Log: 2024-11-08 11:45:56,887 [wrapper] pilotpid: 5942
2024-11-08 12:45:58 (742498): Guest Log: 2024-11-08 11:45:56,934 [wrapper] Pilot exit status: 0
2024-11-08 12:45:58 (742498): Guest Log: 2024-11-08 11:45:57,133 [wrapper] pandaids: 6395392819
2024-11-08 12:45:58 (742498): Guest Log: 2024-11-08 11:45:57,219 [wrapper] cleanup supervisor_pilot  7726 5943
2024-11-08 12:45:58 (742498): Guest Log: 2024-11-08 11:45:57,230 [wrapper] Test setup, not cleaning
2024-11-08 12:45:58 (742498): Guest Log: 2024-11-08 11:45:57,237 [wrapper] ==== wrapper stdout END ====
2024-11-08 12:45:58 (742498): Guest Log: 2024-11-08 11:45:57,243 [wrapper] ==== wrapper stderr END ====
2024-11-08 12:45:58 (742498): Guest Log: 2024-11-08 11:45:57,257 [wrapper] apfmon messages muted
2024-11-08 12:45:58 (742498): Guest Log:  *** Error codes and diagnostics ***
2024-11-08 12:45:58 (742498): Guest Log:     "exeErrorCode": 0,
2024-11-08 12:45:58 (742498): Guest Log:     "exeErrorDiag": "",
2024-11-08 12:45:58 (742498): Guest Log:     "pilotErrorCode": 0,
2024-11-08 12:45:58 (742498): Guest Log:     "pilotErrorDiag": "",
2024-11-08 12:45:58 (742498): Guest Log:  *** Listing of results directory ***
2024-11-08 12:45:58 (742498): Guest Log: total 231760
2024-11-08 12:45:58 (742498): Guest Log: -rw-r--r--. 1 atlas atlas    486088 Nov  8 08:16 pilot3.tar.gz
2024-11-08 12:45:58 (742498): Guest Log: -rwx------. 1 atlas atlas     34589 Nov  8 08:26 runpilot2-wrapper.sh
2024-11-08 12:45:58 (742498): Guest Log: -rw-r--r--. 1 atlas atlas      5652 Nov  8 08:30 queuedata.json
2024-11-08 12:45:58 (742498): Guest Log: -rw-r--r--. 1 atlas atlas    499793 Nov  8 08:48 input.tar.gz
2024-11-08 12:45:58 (742498): Guest Log: -rw-r--r--. 1 atlas atlas     17569 Nov  8 08:48 start_atlas.sh
2024-11-08 12:45:58 (742498): Guest Log: -rw-r--r--. 1 atlas atlas      6658 Nov  8 08:48 init_data.xml
2024-11-08 12:45:58 (742498): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov  8 08:48 EVNT.41944811._000021.pool.root.1 -> /data/./ATLAS.root_0
2024-11-08 12:45:58 (742498): Guest Log: -rw-r--r--. 1 atlas atlas      2625 Nov  8 08:48 pandaJob.out
2024-11-08 12:45:58 (742498): Guest Log: -rw-------. 1 atlas atlas       424 Nov  8 08:48 setup.sh.local
2024-11-08 12:45:58 (742498): Guest Log: -rw-------. 1 atlas atlas   1015592 Nov  8 08:49 agis_schedconf.cvmfs.json
2024-11-08 12:45:58 (742498): Guest Log: -rw-------. 1 atlas atlas   1597090 Nov  8 08:49 agis_ddmendpoints.agis.ALL.json
2024-11-08 12:45:58 (742498): Guest Log: drwx------. 4 atlas atlas      4096 Nov  8 08:49 pilot3
2024-11-08 12:45:58 (742498): Guest Log: -rw-------. 1 atlas atlas 231938264 Nov  8 11:44 HITS.41944815._000513.pool.root.1
2024-11-08 12:45:58 (742498): Guest Log: -rw-------. 1 atlas atlas        95 Nov  8 11:44 pilot_heartbeat.json
2024-11-08 12:45:58 (742498): Guest Log: -rw-------. 1 atlas atlas      1034 Nov  8 11:45 memory_monitor_summary.json
2024-11-08 12:45:58 (742498): Guest Log: -rw-------. 1 atlas atlas    265973 Nov  8 11:45 log.41944815._000513.job.log.tgz.1
2024-11-08 12:45:58 (742498): Guest Log: -rw-------. 1 atlas atlas      7741 Nov  8 11:45 heartbeat.json
2024-11-08 12:45:58 (742498): Guest Log: -rw-------. 1 atlas atlas      4470 Nov  8 11:45 pilotlog.txt
2024-11-08 12:45:58 (742498): Guest Log: -rw-------. 1 atlas atlas    542638 Nov  8 11:45 log.41944815._000513.job.log.1
2024-11-08 12:45:58 (742498): Guest Log: -rw-------. 1 atlas atlas       357 Nov  8 11:45 output.list
2024-11-08 12:45:58 (742498): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov  8 11:45 runtime_log
2024-11-08 12:45:58 (742498): Guest Log: -rw-------. 1 atlas atlas    829440 Nov  8 11:45 result.tar.gz
2024-11-08 12:45:58 (742498): Guest Log: -rw-------. 1 atlas atlas       689 Nov  8 11:45 xWdNDmmUZT6n7OlckoGmwREmGgkVDo1bjSoqOlfODmUanLDm9fKyHm.diag
2024-11-08 12:45:58 (742498): Guest Log: -rw-r--r--. 1 atlas atlas     11031 Nov  8 11:45 runtime_log.err
2024-11-08 12:45:58 (742498): Guest Log: Looking for outputfile HITS.41944815._000513.pool.root.1
2024-11-08 12:45:58 (742498): Guest Log: HITS file was successfully produced
2024-11-08 12:45:58 (742498): Guest Log: -rw-------. 1 atlas atlas 231938264 Nov  8 11:44 /home/atlas/RunAtlas/HITS.41944815._000513.pool.root.1
2024-11-08 12:45:58 (742498): Guest Log: Successfully finished the ATLAS job!
2024-11-08 12:45:58 (742498): Guest Log: Copying the results back to the shared directory!
2024-11-08 12:45:58 (742498): Guest Log:  *** Contents of shared directory: ***
2024-11-08 12:45:58 (742498): Guest Log: total 264120
2024-11-08 12:45:58 (742498): Guest Log: -rw-r--r--. 1 root root 269090398 Nov  8 08:47 ATLAS.root_0
2024-11-08 12:45:58 (742498): Guest Log: -rw-r--r--. 1 root root      6658 Nov  8 08:47 init_data.xml
2024-11-08 12:45:58 (742498): Guest Log: -rw-r--r--. 1 root root    499793 Nov  8 08:47 input.tar.gz
2024-11-08 12:45:58 (742498): Guest Log: -rw-r--r--. 1 root root    829440 Nov  8  2024 result.tar.gz
2024-11-08 12:45:58 (742498): Guest Log: -rw-r--r--. 1 root root     17569 Nov  8 08:47 start_atlas.sh
2024-11-08 12:45:58 (742498): Guest Log:  *** Success! Shutting down the machine. ***
2024-11-08 12:45:58 (742498): VM Completion File Detected.
2024-11-08 12:45:58 (742498): Powering off VM.
2024-11-08 12:45:59 (742498): Successfully stopped VM.
2024-11-08 12:45:59 (742498): Deregistering VM. (boinc_89b45624d7bd4558, slot#0)
2024-11-08 12:45:59 (742498): Removing network bandwidth throttle group from VM.
2024-11-08 12:45:59 (742498): Removing VM from VirtualBox.
12:46:04 (742498): called boinc_finish(0)

</stderr_txt>
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