Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
09:34:51 (266398): wrapper (7.7.26015): starting
09:34:51 (266398): wrapper: running run_atlas (--nthreads 8)
[2024-11-05 09:34:51] Arguments: --nthreads 8
[2024-11-05 09:34:51] Threads: 8
[2024-11-05 09:34:51] Checking for CVMFS
[2024-11-05 09:34:52] Probing /cvmfs/atlas.cern.ch... OK
[2024-11-05 09:34:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-11-05 09:34:52] Running cvmfs_config stat atlas.cern.ch
[2024-11-05 09:34:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-11-05 09:34:52] 2.11.2.0 294477 8766 204816 139125 0 750 14183475 18432001 22713 130560 4 92689032 99.653 77211589 39353 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2024-11-05 09:34:52] CVMFS is ok
[2024-11-05 09:34:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-11-05 09:34:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-11-05 09:34:52] Further information can be found at the LHC@home message board.
[2024-11-05 09:34:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-11-05 09:34:52] Checking for apptainer binary...
[2024-11-05 09:34:52] Using apptainer found in PATH at /usr/bin/apptainer
[2024-11-05 09:34:52] Running /usr/bin/apptainer --version
[2024-11-05 09:34:52] apptainer version 1.3.2-1.el7
[2024-11-05 09:34:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-11-05 09:34:53] c-211-35-1.aglt2.org
[2024-11-05 09:34:53] apptainer works
[2024-11-05 09:34:53] Set ATHENA_PROC_NUMBER=8
[2024-11-05 09:34:53] Set ATHENA_CORE_NUMBER=8
[2024-11-05 09:34:53] Starting ATLAS job with PandaID=6391287941
[2024-11-05 09:34:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-11-05 11:50:17]  *** The last 200 lines of the pilot log: ***
[2024-11-05 11:50:17] 2024-11-05 16:49:58,321 | INFO     | monitor loop #550: job 0:6391287941 is in state 'finished'
[2024-11-05 11:50:17] 2024-11-05 16:49:58,321 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-11-05 11:50:17] 2024-11-05 16:50:00,825 | INFO     | monitor loop #551: job 0:6391287941 is in state 'finished'
[2024-11-05 11:50:17] 2024-11-05 16:50:00,825 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-11-05 11:50:17] 2024-11-05 16:50:03,329 | INFO     | monitor loop #552: job 0:6391287941 is in state 'finished'
[2024-11-05 11:50:17] 2024-11-05 16:50:03,329 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-11-05 11:50:17] 2024-11-05 16:50:03,394 [wrapper] supervise_pilot (15 min periods counter: 10)
[2024-11-05 11:50:17] 2024-11-05 16:50:03,818 | INFO     | CPU arch script returned: x86-64-v4
[2024-11-05 11:50:17] 2024-11-05 16:50:03,819 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6391287941/memory_monitor_summary.json (trf name=prmon)
[2024-11-05 11:50:17] 2024-11-05 16:50:03,820 | INFO     | extracted standard info from prmon json
[2024-11-05 11:50:17] 2024-11-05 16:50:03,820 | INFO     | extracted standard memory fields from prmon json
[2024-11-05 11:50:17] 2024-11-05 16:50:03,820 | WARNING  | GPU info not found in prmon json: 'gpu'
[2024-11-05 11:50:17] 2024-11-05 16:50:03,824 | INFO     | fitting pss+swap vs Time
[2024-11-05 11:50:17] 2024-11-05 16:50:03,824 | INFO     | model: linear, x: [1730817337.0, 1730817398.0, 1730817459.0, 1730817520.0, 1730817581.0, 1730817642.0, 1730817703.0, 1730817764.0, 1730817825.0, 1730817886.0, 1730
[2024-11-05 11:50:17] 2024-11-05 16:50:03,824 | INFO     | sum of square deviations: 713395970.75
[2024-11-05 11:50:17] 2024-11-05 16:50:03,825 | INFO     | sum of deviations: 143720865780.5
[2024-11-05 11:50:17] 2024-11-05 16:50:03,825 | INFO     | mean x: 1730821333.75
[2024-11-05 11:50:17] 2024-11-05 16:50:03,825 | INFO     | mean y: 2183269.6515151514
[2024-11-05 11:50:17] 2024-11-05 16:50:03,825 | INFO     | -- intersect: -348689358030.18384
[2024-11-05 11:50:17] 2024-11-05 16:50:03,825 | INFO     | intersect: -348689358030.18384
[2024-11-05 11:50:17] 2024-11-05 16:50:03,826 | INFO     | chi2: 16.363787142593587
[2024-11-05 11:50:17] 2024-11-05 16:50:03,826 | INFO     | model: linear, x: [1730817337.0, 1730817398.0, 1730817459.0, 1730817520.0, 1730817581.0, 1730817642.0, 1730817703.0, 1730817764.0, 1730817825.0, 1730817886.0, 1730
[2024-11-05 11:50:17] 2024-11-05 16:50:03,826 | INFO     | sum of square deviations: 635435522.6299233
[2024-11-05 11:50:17] 2024-11-05 16:50:03,827 | INFO     | sum of deviations: 175619418824.7164
[2024-11-05 11:50:17] 2024-11-05 16:50:03,827 | INFO     | mean x: 1730821181.2992127
[2024-11-05 11:50:17] 2024-11-05 16:50:03,827 | INFO     | mean y: 2245739.1653543306
[2024-11-05 11:50:17] 2024-11-05 16:50:03,827 | INFO     | -- intersect: -478355981215.5245
[2024-11-05 11:50:17] 2024-11-05 16:50:03,827 | INFO     | intersect: -478355981215.5245
[2024-11-05 11:50:17] 2024-11-05 16:50:03,827 | INFO     | chi2: 11.180135090241347
[2024-11-05 11:50:17] 2024-11-05 16:50:03,827 | INFO     | current chi2=11.180135090241347 (change=31.677581767484753 %)
[2024-11-05 11:50:17] 2024-11-05 16:50:03,828 | INFO     | model: linear, x: [1730817337.0, 1730817398.0, 1730817459.0, 1730817520.0, 1730817581.0, 1730817642.0, 1730817703.0, 1730817764.0, 1730817825.0, 1730817886.0, 1730
[2024-11-05 11:50:17] 2024-11-05 16:50:03,828 | INFO     | sum of square deviations: 563382161.34426
[2024-11-05 11:50:17] 2024-11-05 16:50:03,828 | INFO     | sum of deviations: 184053365219.44263
[2024-11-05 11:50:17] 2024-11-05 16:50:03,829 | INFO     | mean x: 1730821028.852459
[2024-11-05 11:50:17] 2024-11-05 16:50:03,829 | INFO     | mean y: 2262986.524590164
[2024-11-05 11:50:17] 2024-11-05 16:50:03,829 | INFO     | -- intersect: -565445947501.2972
[2024-11-05 11:50:17] 2024-11-05 16:50:03,829 | INFO     | intersect: -565445947501.2972
[2024-11-05 11:50:17] 2024-11-05 16:50:03,829 | INFO     | chi2: 8.906135944474013
[2024-11-05 11:50:17] 2024-11-05 16:50:03,829 | INFO     | current chi2=8.906135944474013 (change=20.33963925670459 %)
[2024-11-05 11:50:17] 2024-11-05 16:50:03,829 | INFO     | right removable region: 121
[2024-11-05 11:50:17] 2024-11-05 16:50:03,829 | INFO     | model: linear, x: [1730817642.0, 1730817703.0, 1730817764.0, 1730817825.0, 1730817886.0, 1730817947.0, 1730818008.0, 1730818069.0, 1730818130.0, 1730818191.0, 1730
[2024-11-05 11:50:17] 2024-11-05 16:50:03,830 | INFO     | sum of square deviations: 635334872.6299233
[2024-11-05 11:50:17] 2024-11-05 16:50:03,830 | INFO     | sum of deviations: 108699121387.40935
[2024-11-05 11:50:17] 2024-11-05 16:50:03,830 | INFO     | mean x: 1730821486.2992127
[2024-11-05 11:50:17] 2024-11-05 16:50:03,830 | INFO     | mean y: 2251522.094488189
[2024-11-05 11:50:17] 2024-11-05 16:50:03,830 | INFO     | -- intersect: -296123119434.4648
[2024-11-05 11:50:17] 2024-11-05 16:50:03,831 | INFO     | intersect: -296123119434.4648
[2024-11-05 11:50:17] 2024-11-05 16:50:03,831 | INFO     | chi2: 13.704529479719797
[2024-11-05 11:50:17] 2024-11-05 16:50:03,831 | INFO     | current chi2=13.704529479719797 (change=16.250869311004184 %)
[2024-11-05 11:50:17] 2024-11-05 16:50:03,831 | INFO     | left removable region: 10
[2024-11-05 11:50:17] 2024-11-05 16:50:03,831 | INFO     | model: linear, x: [1730817947.0, 1730818008.0, 1730818069.0, 1730818130.0, 1730818191.0, 1730818252.0, 1730818313.0, 1730818374.0, 1730818435.0, 1730818496.0, 1730
[2024-11-05 11:50:17] 2024-11-05 16:50:03,831 | INFO     | sum of square deviations: 424303513.6936936
[2024-11-05 11:50:17] 2024-11-05 16:50:03,832 | INFO     | sum of deviations: 122990673066.59454
[2024-11-05 11:50:17] 2024-11-05 16:50:03,832 | INFO     | mean x: 1730821303.4774776
[2024-11-05 11:50:17] 2024-11-05 16:50:03,832 | INFO     | mean y: 2408940.8378378376
[2024-11-05 11:50:17] 2024-11-05 16:50:03,832 | INFO     | -- intersect: -501701843327.90643
[2024-11-05 11:50:17] 2024-11-05 16:50:03,832 | INFO     | intersect: -501701843327.90643
[2024-11-05 11:50:17] 2024-11-05 16:50:03,832 | INFO     | chi2: 5.923610581176885
[2024-11-05 11:50:17] 2024-11-05 16:50:03,833 | INFO     | -- intersect: -501701843327.90643
[2024-11-05 11:50:17] 2024-11-05 16:50:03,833 | INFO     | current memory leak: 289.86 B/s (using 111 data points, chi2=5.92)
[2024-11-05 11:50:17] 2024-11-05 16:50:03,833 | INFO     | ..............................
[2024-11-05 11:50:17] 2024-11-05 16:50:03,833 | INFO     | . Timing measurements:
[2024-11-05 11:50:17] 2024-11-05 16:50:03,833 | INFO     | . get job = 0 s
[2024-11-05 11:50:17] 2024-11-05 16:50:03,833 | INFO     | . initial setup = 2 s
[2024-11-05 11:50:17] 2024-11-05 16:50:03,834 | INFO     | . payload setup = 7 s
[2024-11-05 11:50:17] 2024-11-05 16:50:03,834 | INFO     | . stage-in = 0 s
[2024-11-05 11:50:17] 2024-11-05 16:50:03,834 | INFO     | . payload execution = 8058 s
[2024-11-05 11:50:17] 2024-11-05 16:50:03,834 | INFO     | . stage-out = 2 s
[2024-11-05 11:50:17] 2024-11-05 16:50:03,834 | INFO     | . log creation = 1 s
[2024-11-05 11:50:17] 2024-11-05 16:50:03,834 | INFO     | ..............................
[2024-11-05 11:50:17] 2024-11-05 16:50:04,194 | INFO     | 
[2024-11-05 11:50:17] 2024-11-05 16:50:04,194 | INFO     | job summary report
[2024-11-05 11:50:17] 2024-11-05 16:50:04,194 | INFO     | --------------------------------------------------
[2024-11-05 11:50:17] 2024-11-05 16:50:04,194 | INFO     | PanDA job id: 6391287941
[2024-11-05 11:50:17] 2024-11-05 16:50:04,194 | INFO     | task id: 41843881
[2024-11-05 11:50:17] 2024-11-05 16:50:04,194 | INFO     | errors: (none)
[2024-11-05 11:50:17] 2024-11-05 16:50:04,194 | INFO     | status: LOG_TRANSFER = DONE 
[2024-11-05 11:50:17] 2024-11-05 16:50:04,194 | INFO     | pilot state: finished 
[2024-11-05 11:50:17] 2024-11-05 16:50:04,195 | INFO     | transexitcode: 0
[2024-11-05 11:50:17] 2024-11-05 16:50:04,195 | INFO     | exeerrorcode: 0
[2024-11-05 11:50:17] 2024-11-05 16:50:04,195 | INFO     | exeerrordiag: 
[2024-11-05 11:50:17] 2024-11-05 16:50:04,195 | INFO     | exitcode: 0
[2024-11-05 11:50:17] 2024-11-05 16:50:04,195 | INFO     | exitmsg: OK
[2024-11-05 11:50:17] 2024-11-05 16:50:04,195 | INFO     | cpuconsumptiontime: 17235 s
[2024-11-05 11:50:17] 2024-11-05 16:50:04,195 | INFO     | nevents: 50
[2024-11-05 11:50:17] 2024-11-05 16:50:04,195 | INFO     | neventsw: 0
[2024-11-05 11:50:17] 2024-11-05 16:50:04,195 | INFO     | pid: 290569
[2024-11-05 11:50:17] 2024-11-05 16:50:04,195 | INFO     | pgrp: 290569
[2024-11-05 11:50:17] 2024-11-05 16:50:04,195 | INFO     | corecount: 8
[2024-11-05 11:50:17] 2024-11-05 16:50:04,195 | INFO     | event service: False
[2024-11-05 11:50:17] 2024-11-05 16:50:04,195 | INFO     | sizes: {0: 2413170, 1: 2413170, 5: 2413404, 11: 2413460, 8070: 2441905, 8073: 2450925, 8074: 2451109, 8082: 2451331}
[2024-11-05 11:50:17] 2024-11-05 16:50:04,195 | INFO     | --------------------------------------------------
[2024-11-05 11:50:17] 2024-11-05 16:50:04,195 | INFO     | 
[2024-11-05 11:50:17] 2024-11-05 16:50:04,196 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2024-11-05 11:50:17] 2024-11-05 16:50:04,227 | INFO     | queue jobs had 0 job(s) [purged]
[2024-11-05 11:50:17] 2024-11-05 16:50:04,228 | INFO     | queue payloads had 0 job(s) [purged]
[2024-11-05 11:50:17] 2024-11-05 16:50:04,229 | INFO     | queue data_in had 0 job(s) [purged]
[2024-11-05 11:50:17] 2024-11-05 16:50:04,229 | INFO     | queue data_out had 0 job(s) [purged]
[2024-11-05 11:50:17] 2024-11-05 16:50:04,229 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-11-05 11:50:17] 2024-11-05 16:50:04,229 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-11-05 11:50:17] 2024-11-05 16:50:04,229 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-11-05 11:50:17] 2024-11-05 16:50:04,229 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-11-05 11:50:17] 2024-11-05 16:50:04,229 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-11-05 11:50:17] 2024-11-05 16:50:04,229 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-11-05 11:50:17] 2024-11-05 16:50:04,229 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-11-05 11:50:17] 2024-11-05 16:50:04,229 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-11-05 11:50:17] 2024-11-05 16:50:04,229 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-11-05 11:50:17] 2024-11-05 16:50:04,229 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-11-05 11:50:17] 2024-11-05 16:50:04,230 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-11-05 11:50:17] 2024-11-05 16:50:04,230 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-11-05 11:50:17] 2024-11-05 16:50:04,230 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-11-05 11:50:17] 2024-11-05 16:50:04,230 | INFO     | queue completed_jobids has 1 job(s)
[2024-11-05 11:50:17] 2024-11-05 16:50:04,230 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-11-05 11:50:17] 2024-11-05 16:50:04,230 | INFO     | queue messages had 0 job(s) [purged]
[2024-11-05 11:50:17] 2024-11-05 16:50:04,230 | INFO     | job 6391287941 has completed (purged errors)
[2024-11-05 11:50:17] 2024-11-05 16:50:04,230 | INFO     | overall cleanup function is called
[2024-11-05 11:50:17] 2024-11-05 16:50:05,243 | INFO     | --- collectZombieJob: --- 10, [290569]
[2024-11-05 11:50:17] 2024-11-05 16:50:05,243 | INFO     | zombie collector waiting for pid 290569
[2024-11-05 11:50:17] 2024-11-05 16:50:05,243 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-11-05 11:50:17] 2024-11-05 16:50:05,244 | INFO     | collected zombie processes
[2024-11-05 11:50:17] 2024-11-05 16:50:05,244 | INFO     | will attempt to kill all subprocesses of pid=290569
[2024-11-05 11:50:17] 2024-11-05 16:50:05,450 | INFO     | process IDs to be killed: [290569] (in reverse order)
[2024-11-05 11:50:17] 2024-11-05 16:50:05,572 | WARNING  | found no corresponding commands to process id(s)
[2024-11-05 11:50:17] 2024-11-05 16:50:05,572 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-11-05 11:50:17] 2024-11-05 16:50:05,582 | INFO     | did not find any defunct processes belonging to 290569
[2024-11-05 11:50:17] 2024-11-05 16:50:05,591 | INFO     | did not find any defunct processes belonging to 290569
[2024-11-05 11:50:17] 2024-11-05 16:50:05,591 | INFO     | ready for new job
[2024-11-05 11:50:17] 2024-11-05 16:50:05,591 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-11-05 11:50:17] 2024-11-05 16:50:05,592 | INFO     | **************************************
[2024-11-05 11:50:17] 2024-11-05 16:50:05,593 | INFO     | ***  PanDA Pilot version 3.9.1.13  ***
[2024-11-05 11:50:17] 2024-11-05 16:50:05,593 | INFO     | **************************************
[2024-11-05 11:50:17] 2024-11-05 16:50:05,593 | INFO     | 
[2024-11-05 11:50:17] 2024-11-05 16:50:05,596 | INFO     | architecture information:
[2024-11-05 11:50:17] 2024-11-05 16:50:05,596 | INFO     | executing command: cat /etc/os-release
[2024-11-05 11:50:17] 2024-11-05 16:50:05,616 | INFO     | cat /etc/os-release:
[2024-11-05 11:50:17] NAME="CentOS Linux"
[2024-11-05 11:50:17] VERSION="7 (Core)"
[2024-11-05 11:50:17] ID="centos"
[2024-11-05 11:50:17] ID_LIKE="rhel fedora"
[2024-11-05 11:50:17] VERSION_ID="7"
[2024-11-05 11:50:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-11-05 11:50:17] ANSI_COLOR="0;31"
[2024-11-05 11:50:17] CPE_NAME="cpe:/o:centos:centos:7"
[2024-11-05 11:50:17] HOME_URL="https://www.centos.org/"
[2024-11-05 11:50:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-11-05 11:50:17] 
[2024-11-05 11:50:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-11-05 11:50:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-11-05 11:50:17] REDHAT_SUPPORT_PRODUCT="centos"
[2024-11-05 11:50:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-11-05 11:50:17] 
[2024-11-05 11:50:17] 2024-11-05 16:50:05,616 | INFO     | **************************************
[2024-11-05 11:50:17] 2024-11-05 16:50:06,118 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2024-11-05 11:50:17] 2024-11-05 16:50:06,152 | INFO     | sufficient remaining disk space (102219382784 B)
[2024-11-05 11:50:17] 2024-11-05 16:50:06,152 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-11-05 11:50:17] 2024-11-05 16:50:06,152 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-11-05 11:50:17] 2024-11-05 16:50:06,153 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-11-05 11:50:17] 2024-11-05 16:50:06,322 | INFO     | all data control threads have been joined
[2024-11-05 11:50:17] 2024-11-05 16:50:06,332 | INFO     | all payload control threads have been joined
[2024-11-05 11:50:17] 2024-11-05 16:50:06,372 | INFO     | found 0 job(s) in 20 queues
[2024-11-05 11:50:17] 2024-11-05 16:50:06,372 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-11-05 11:50:17] 2024-11-05 16:50:06,372 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-11-05 11:50:17] 2024-11-05 16:50:06,837 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-11-05 11:50:17] 2024-11-05 16:50:06,837 | INFO     | aborting loop
[2024-11-05 11:50:17] 2024-11-05 16:50:07,033 | INFO     | all job control threads have been joined
[2024-11-05 11:50:17] 2024-11-05 16:50:07,157 | INFO     | [job] retrieve thread has finished
[2024-11-05 11:50:17] 2024-11-05 16:50:07,172 | INFO     | [payload] failed_post thread has finished
[2024-11-05 11:50:17] 2024-11-05 16:50:07,328 | INFO     | [data] control thread has finished
[2024-11-05 11:50:17] 2024-11-05 16:50:07,338 | INFO     | [payload] control thread has finished
[2024-11-05 11:50:17] 2024-11-05 16:50:07,464 | INFO     | [job] validate thread has finished
[2024-11-05 11:50:17] 2024-11-05 16:50:07,530 | INFO     | [payload] execute_payloads thread has finished
[2024-11-05 11:50:17] 2024-11-05 16:50:07,547 | INFO     | [data] copytool_in thread has finished
[2024-11-05 11:50:17] 2024-11-05 16:50:07,612 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-11-05 11:50:17] 2024-11-05 16:50:07,631 | INFO     | [payload] run_realtimelog thread has finished
[2024-11-05 11:50:17] 2024-11-05 16:50:07,662 | INFO     | [job] create_data_payload thread has finished
[2024-11-05 11:50:17] 2024-11-05 16:50:07,842 | INFO     | [job] job monitor thread has finished
[2024-11-05 11:50:17] 2024-11-05 16:50:07,854 | INFO     | [payload] validate_pre thread has finished
[2024-11-05 11:50:17] 2024-11-05 16:50:08,039 | INFO     | [job] control thread has finished
[2024-11-05 11:50:17] 2024-11-05 16:50:08,647 | INFO     | [payload] validate_post thread has finished
[2024-11-05 11:50:17] 2024-11-05 16:50:08,938 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-11-05 11:50:17] 2024-11-05 16:50:09,618 | INFO     | [data] copytool_out thread has finished
[2024-11-05 11:50:17] 2024-11-05 16:50:09,943 | INFO     | [job] queue monitor thread has finished
[2024-11-05 11:50:17] 2024-11-05 16:50:10,159 | INFO     | [data] queue_monitor thread has finished
[2024-11-05 11:50:17] 2024-11-05 16:50:11,538 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140260269020992)>', '<ExcThread(monitor, started 140259966822144)>']
[2024-11-05 11:50:17] 2024-11-05 16:50:12,406 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-11-05 11:50:17] 2024-11-05 16:50:12,406 | INFO     | [monitor] control thread has ended
[2024-11-05 11:50:17] 2024-11-05 16:50:16,563 | INFO     | all workflow threads have been joined
[2024-11-05 11:50:17] 2024-11-05 16:50:16,563 | INFO     | end of generic workflow (traces error code: 0)
[2024-11-05 11:50:17] 2024-11-05 16:50:16,563 | INFO     | traces error code: 0
[2024-11-05 11:50:17] 2024-11-05 16:50:16,564 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-11-05 11:50:17] 2024-11-05 16:50:16,694 [wrapper] ==== pilot stdout END ====
[2024-11-05 11:50:17] 2024-11-05 16:50:16,697 [wrapper] ==== wrapper stdout RESUME ====
[2024-11-05 11:50:17] 2024-11-05 16:50:16,701 [wrapper] pilotpid: 271068
[2024-11-05 11:50:17] 2024-11-05 16:50:16,704 [wrapper] Pilot exit status: 0
[2024-11-05 11:50:17] 2024-11-05 16:50:16,714 [wrapper] pandaids: 6391287941
[2024-11-05 11:50:17] 2024-11-05 16:50:16,813 [wrapper] cleanup supervisor_pilot 237584 271069
[2024-11-05 11:50:17] 2024-11-05 16:50:16,817 [wrapper] Test setup, not cleaning
[2024-11-05 11:50:17] 2024-11-05 16:50:16,820 [wrapper] ==== wrapper stdout END ====
[2024-11-05 11:50:17] 2024-11-05 16:50:16,822 [wrapper] ==== wrapper stderr END ====
[2024-11-05 11:50:17] 2024-11-05 16:50:16,830 [wrapper] apfmon messages muted
[2024-11-05 11:50:17]  *** Error codes and diagnostics ***
[2024-11-05 11:50:17]     "exeErrorCode": 0,
[2024-11-05 11:50:17]     "exeErrorDiag": "",
[2024-11-05 11:50:17]     "pilotErrorCode": 0,
[2024-11-05 11:50:17]     "pilotErrorDiag": "",
[2024-11-05 11:50:17]  *** Listing of results directory ***
[2024-11-05 11:50:17] total 406924
[2024-11-05 11:50:17] -rw-r--r-- 1 boincer umatlas    486088 Nov  5 08:47 pilot3.tar.gz
[2024-11-05 11:50:17] -rwx------ 1 boincer umatlas     34589 Nov  5 08:59 runpilot2-wrapper.sh
[2024-11-05 11:50:17] -rw-r--r-- 1 boincer umatlas      5652 Nov  5 08:59 queuedata.json
[2024-11-05 11:50:17] -rw-r--r-- 1 boincer umatlas       100 Nov  5 09:34 wrapper_26015_x86_64-pc-linux-gnu
[2024-11-05 11:50:17] -rwxr-xr-x 1 boincer umatlas      7986 Nov  5 09:34 run_atlas
[2024-11-05 11:50:17] -rw-r--r-- 1 boincer umatlas       105 Nov  5 09:34 job.xml
[2024-11-05 11:50:17] -rw-r--r-- 2 boincer umatlas 358377682 Nov  5 09:34 EVNT.41780009._000004.pool.root.1
[2024-11-05 11:50:17] -rw-r--r-- 2 boincer umatlas     17569 Nov  5 09:34 start_atlas.sh
[2024-11-05 11:50:17] drwxrwx--x 2 boincer umatlas      4096 Nov  5 09:34 shared
[2024-11-05 11:50:17] -rw-r--r-- 2 boincer umatlas    499907 Nov  5 09:34 input.tar.gz
[2024-11-05 11:50:17] -rw-r--r-- 1 boincer umatlas         0 Nov  5 09:34 boinc_lockfile
[2024-11-05 11:50:17] -rw-r--r-- 1 boincer umatlas      2847 Nov  5 09:34 pandaJob.out
[2024-11-05 11:50:17] -rw------- 1 boincer umatlas       467 Nov  5 09:34 setup.sh.local
[2024-11-05 11:50:17] -rw------- 1 boincer umatlas   1026526 Nov  5 09:35 agis_schedconf.cvmfs.json
[2024-11-05 11:50:17] -rw------- 1 boincer umatlas   1602446 Nov  5 09:35 agis_ddmendpoints.agis.ALL.json
[2024-11-05 11:50:17] drwx------ 4 boincer umatlas      4096 Nov  5 09:35 pilot3
[2024-11-05 11:50:17] -rw-r--r-- 1 boincer umatlas       529 Nov  5 11:37 boinc_task_state.xml
[2024-11-05 11:50:17] -rw-r--r-- 1 boincer umatlas      6385 Nov  5 11:48 init_data.xml
[2024-11-05 11:50:17] -rw------- 1 boincer umatlas  50556635 Nov  5 11:49 HITS.41843881._007685.pool.root.1
[2024-11-05 11:50:17] -rw------- 1 boincer umatlas        95 Nov  5 11:49 pilot_heartbeat.json
[2024-11-05 11:50:17] -rw------- 1 boincer umatlas      1070 Nov  5 11:49 memory_monitor_summary.json
[2024-11-05 11:50:17] -rw------- 1 boincer umatlas   1237466 Nov  5 11:49 log.41843881._007685.job.log.tgz.1
[2024-11-05 11:50:17] -rw------- 1 boincer umatlas      8619 Nov  5 11:50 heartbeat.json
[2024-11-05 11:50:17] -rw-r--r-- 1 boincer umatlas      8192 Nov  5 11:50 boinc_mmap_file
[2024-11-05 11:50:17] -rw-r--r-- 1 boincer umatlas        27 Nov  5 11:50 wrapper_checkpoint.txt
[2024-11-05 11:50:17] -rw------- 1 boincer umatlas      4216 Nov  5 11:50 pilotlog.txt
[2024-11-05 11:50:17] -rw------- 1 boincer umatlas    710417 Nov  5 11:50 log.41843881._007685.job.log.1
[2024-11-05 11:50:17] -rw------- 1 boincer umatlas       353 Nov  5 11:50 output.list
[2024-11-05 11:50:17] -rw-r--r-- 1 boincer umatlas       620 Nov  5 11:50 runtime_log
[2024-11-05 11:50:17] -rw------- 1 boincer umatlas   1966080 Nov  5 11:50 result.tar.gz
[2024-11-05 11:50:17] -rw-r--r-- 1 boincer umatlas     11428 Nov  5 11:50 runtime_log.err
[2024-11-05 11:50:17] -rw------- 1 boincer umatlas       660 Nov  5 11:50 02OKDm3GZS6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmBAKNDmQZ67To.diag
[2024-11-05 11:50:17] -rw-r--r-- 1 boincer umatlas     21716 Nov  5 11:50 stderr.txt
[2024-11-05 11:50:17] HITS file was successfully produced:
[2024-11-05 11:50:17] -rw------- 1 boincer umatlas 50556635 Nov  5 11:49 shared/HITS.pool.root.1
[2024-11-05 11:50:17]  *** Contents of shared directory: ***
[2024-11-05 11:50:17] total 401788
[2024-11-05 11:50:17] -rw-r--r-- 2 boincer umatlas 358377682 Nov  5 09:34 ATLAS.root_0
[2024-11-05 11:50:17] -rw-r--r-- 2 boincer umatlas     17569 Nov  5 09:34 start_atlas.sh
[2024-11-05 11:50:17] -rw-r--r-- 2 boincer umatlas    499907 Nov  5 09:34 input.tar.gz
[2024-11-05 11:50:17] -rw------- 1 boincer umatlas  50556635 Nov  5 11:49 HITS.pool.root.1
[2024-11-05 11:50:17] -rw------- 1 boincer umatlas   1966080 Nov  5 11:50 result.tar.gz
11:50:18 (266398): run_atlas exited; CPU time 17021.535772
11:50:18 (266398): called boinc_finish(0)

</stderr_txt>
]]>

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