Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2024-11-05 18:14:09 (482281): Detected: vboxwrapper 26206
2024-11-05 18:14:09 (482281): Detected: BOINC client v8.0.4
2024-11-05 18:14:09 (482281): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2024-11-05 18:14:09 (482281): Successfully copied 'init_data.xml' to the shared directory.
2024-11-05 18:14:09 (482281): Create VM. (boinc_55ad991ccabf72e2, slot#0)
2024-11-05 18:14:09 (482281): Setting Memory Size for VM. (4800MB)
2024-11-05 18:14:09 (482281): Setting CPU Count for VM. (8)
2024-11-05 18:14:09 (482281): Setting Chipset Options for VM.
2024-11-05 18:14:09 (482281): Setting Graphics Controller Options for VM.
2024-11-05 18:14:09 (482281): Setting Boot Options for VM.
2024-11-05 18:14:09 (482281): Setting Network Configuration for NAT.
2024-11-05 18:14:09 (482281): Enabling VM Network Access.
2024-11-05 18:14:09 (482281): Disabling USB Support for VM.
2024-11-05 18:14:09 (482281): Disabling COM Port Support for VM.
2024-11-05 18:14:09 (482281): Disabling LPT Port Support for VM.
2024-11-05 18:14:09 (482281): Disabling Audio Support for VM.
2024-11-05 18:14:09 (482281): Disabling Clipboard Support for VM.
2024-11-05 18:14:09 (482281): Disabling Drag and Drop Support for VM.
2024-11-05 18:14:09 (482281): Adding storage controller(s) to VM.
2024-11-05 18:14:09 (482281): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-11-05 18:14:11 (482281): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-11-05 18:14:11 (482281): forwarding host port 55039 to guest port 80
2024-11-05 18:14:11 (482281): Enabling remote desktop for VM.
2024-11-05 18:14:11 (482281): Required extension pack not installed, remote desktop not enabled.
2024-11-05 18:14:11 (482281): Enabling shared directory for VM.
2024-11-05 18:14:11 (482281): Starting VM using VBoxManage interface. (boinc_55ad991ccabf72e2, slot#0)
2024-11-05 18:14:12 (482281): Successfully started VM. (PID = '482545')
2024-11-05 18:14:12 (482281): Reporting VM Process ID to BOINC.
2024-11-05 18:14:12 (482281): Guest Log: BIOS: VirtualBox 7.1.4
2024-11-05 18:14:12 (482281): Guest Log: CPUID EDX: 0x178bfbff
2024-11-05 18:14:12 (482281): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-11-05 18:14:12 (482281): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-11-05 18:14:12 (482281): VM state change detected. (old = 'poweredoff', new = 'running')
2024-11-05 18:14:12 (482281): Detected: Web Application Enabled (http://localhost:55039)
2024-11-05 18:14:12 (482281): Preference change detected
2024-11-05 18:14:12 (482281): Setting CPU throttle for VM. (50%)
2024-11-05 18:14:12 (482281): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-11-05 18:14:14 (482281): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-11-05 18:14:14 (482281): Guest Log: BIOS: Booting from Hard Disk...
2024-11-05 18:14:17 (482281): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-11-05 18:14:17 (482281): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-11-05 18:14:17 (482281): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-11-05 18:14:17 (482281): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-11-05 18:14:17 (482281): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-11-05 18:14:17 (482281): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-11-05 18:14:17 (482281): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-11-05 18:14:17 (482281): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-11-05 18:14:17 (482281): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-11-05 18:14:17 (482281): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-11-05 18:14:17 (482281): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-11-05 18:14:17 (482281): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-11-05 18:14:17 (482281): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-11-05 18:14:17 (482281): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-11-05 18:14:17 (482281): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-11-05 18:14:17 (482281): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-11-05 18:14:17 (482281): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-11-05 18:14:17 (482281): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-11-05 18:14:17 (482281): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-11-05 18:14:17 (482281): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-11-05 18:14:17 (482281): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-11-05 18:14:17 (482281): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-11-05 18:14:17 (482281): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-11-05 18:14:17 (482281): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-11-05 18:14:17 (482281): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-11-05 18:14:17 (482281): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-11-05 18:14:17 (482281): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-11-05 18:14:17 (482281): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-11-05 18:14:17 (482281): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-11-05 18:14:17 (482281): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-11-05 18:14:17 (482281): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-11-05 18:14:17 (482281): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-11-05 18:14:24 (482281): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-11-05 18:14:24 (482281): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-11-05 18:14:32 (482281): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-11-05 18:14:32 (482281): Guest Log: 00:00:00.000182 main     Log opened 2024-11-05T17:14:30.077398000Z
2024-11-05 18:14:32 (482281): Guest Log: 00:00:00.000289 main     OS Product: Linux
2024-11-05 18:14:32 (482281): Guest Log: 00:00:00.000327 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-11-05 18:14:32 (482281): Guest Log: 00:00:00.000339 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-11-05 18:14:32 (482281): Guest Log: 00:00:00.000350 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-11-05 18:14:32 (482281): Guest Log: 00:00:00.000350 main     Process ID: 1367
2024-11-05 18:14:32 (482281): Guest Log: 00:00:00.000350 main     Package type: LINUX_64BITS_GENERIC
2024-11-05 18:14:32 (482281): Guest Log: 00:00:00.000918 main     5.2.32 r132073 started. Verbose level = 0
2024-11-05 18:14:32 (482281): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-11-05 18:14:32 (482281): Guest Log: [INFO] Mounting shared directory
2024-11-05 18:14:32 (482281): Guest Log: [INFO] Checking for init_data.xml
2024-11-05 18:14:34 (482281): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-11-05 18:14:34 (482281): Guest Log: [INFO] Detected branch: prod
2024-11-05 18:14:35 (482281): Guest Log: This is the prod version of the ATLAS job wrapper
2024-11-05 18:14:35 (482281): Guest Log: Copying input files
2024-11-05 18:14:36 (482281): Guest Log: Copied input files into RunAtlas.
2024-11-05 18:14:36 (482281): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-11-05 18:14:36 (482281): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-11-05 18:14:36 (482281): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-11-05 18:14:36 (482281): Guest Log: Further information can be found at the LHC@home message board.
2024-11-05 18:14:45 (482281): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-11-05 18:14:45 (482281): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-11-05 18:14:45 (482281): Guest Log: 2.6.3.0 1641 0 32276 139133 3 1 3117281 4096000 0 65024 0 0 n/a 1 2 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
2024-11-05 18:14:45 (482281): Guest Log: copied the webapp to /var/www
2024-11-05 18:14:45 (482281): Guest Log: ATHENA_PROC_NUMBER=8
2024-11-05 18:14:45 (482281): Guest Log: ATHENA_CORE_NUMBER=8
2024-11-05 18:14:45 (482281): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-11-05 18:14:45 (482281): Guest Log:  *** Starting ATLAS job. (PandaID=6391259204 taskID=41843841) ***
2024-11-05 19:31:34 (482281): Guest Log:  *** Job finished ***
2024-11-05 19:31:34 (482281): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-11-05 19:31:35 (482281): Guest Log: 2024-11-05 18:31:19,509 | INFO     | [data] queue_monitor thread has finished
2024-11-05 19:31:35 (482281): Guest Log: 2024-11-05 18:31:26,017 | INFO     | job.realtimelogging is not enabled
2024-11-05 19:31:35 (482281): Guest Log: 2024-11-05 18:31:27,019 | INFO     | [payload] run_realtimelog thread has finished
2024-11-05 19:31:35 (482281): Guest Log: 2024-11-05 18:31:29,004 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140452673906496)>', '<ExcThread(monitor, started 140452359542528)>']
2024-11-05 19:31:35 (482281): Guest Log: 2024-11-05 18:31:29,658 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-11-05 19:31:35 (482281): Guest Log: 2024-11-05 18:31:29,658 | INFO     | [monitor] control thread has ended
2024-11-05 19:31:35 (482281): Guest Log: 2024-11-05 18:31:34,012 | INFO     | all workflow threads have been joined
2024-11-05 19:31:35 (482281): Guest Log: 2024-11-05 18:31:34,012 | INFO     | end of generic workflow (traces error code: 0)
2024-11-05 19:31:35 (482281): Guest Log: 2024-11-05 18:31:34,013 | INFO     | traces error code: 0
2024-11-05 19:31:35 (482281): Guest Log: 2024-11-05 18:31:34,013 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-11-05 19:31:35 (482281): Guest Log: 2024-11-05 18:31:34,163 [wrapper] ==== pilot stdout END ====
2024-11-05 19:31:35 (482281): Guest Log: 2024-11-05 18:31:34,167 [wrapper] ==== wrapper stdout RESUME ====
2024-11-05 19:31:35 (482281): Guest Log: 2024-11-05 18:31:34,171 [wrapper] pilotpid: 6024
2024-11-05 19:31:35 (482281): Guest Log: 2024-11-05 18:31:34,175 [wrapper] Pilot exit status: 0
2024-11-05 19:31:35 (482281): Guest Log: 2024-11-05 18:31:34,190 [wrapper] pandaids: 6391259204
2024-11-05 19:31:35 (482281): Guest Log: 2024-11-05 18:31:34,215 [wrapper] cleanup supervisor_pilot  4136 6025
2024-11-05 19:31:35 (482281): Guest Log: 2024-11-05 18:31:34,219 [wrapper] Test setup, not cleaning
2024-11-05 19:31:35 (482281): Guest Log: 2024-11-05 18:31:34,223 [wrapper] ==== wrapper stdout END ====
2024-11-05 19:31:35 (482281): Guest Log: 2024-11-05 18:31:34,227 [wrapper] ==== wrapper stderr END ====
2024-11-05 19:31:35 (482281): Guest Log: 2024-11-05 18:31:34,235 [wrapper] apfmon messages muted
2024-11-05 19:31:35 (482281): Guest Log:  *** Error codes and diagnostics ***
2024-11-05 19:31:35 (482281): Guest Log:     "exeErrorCode": 0,
2024-11-05 19:31:35 (482281): Guest Log:     "exeErrorDiag": "",
2024-11-05 19:31:35 (482281): Guest Log:     "pilotErrorCode": 0,
2024-11-05 19:31:35 (482281): Guest Log:     "pilotErrorDiag": "",
2024-11-05 19:31:35 (482281): Guest Log:  *** Listing of results directory ***
2024-11-05 19:31:35 (482281): Guest Log: total 59436
2024-11-05 19:31:35 (482281): Guest Log: -rw-r--r--. 1 atlas atlas   486088 Nov  5 12:50 pilot3.tar.gz
2024-11-05 19:31:35 (482281): Guest Log: -rw-r--r--. 1 atlas atlas     5652 Nov  5 13:30 queuedata.json
2024-11-05 19:31:35 (482281): Guest Log: -rwx------. 1 atlas atlas    34589 Nov  5 13:34 runpilot2-wrapper.sh
2024-11-05 19:31:35 (482281): Guest Log: -rw-r--r--. 1 atlas atlas    17569 Nov  5 17:14 start_atlas.sh
2024-11-05 19:31:35 (482281): Guest Log: -rw-r--r--. 1 atlas atlas   499922 Nov  5 17:14 input.tar.gz
2024-11-05 19:31:35 (482281): Guest Log: -rw-r--r--. 1 atlas atlas     6825 Nov  5 17:14 init_data.xml
2024-11-05 19:31:35 (482281): Guest Log: lrwxrwxrwx. 1 atlas atlas       20 Nov  5 17:14 EVNT.41779954._000006.pool.root.1 -> /data/./ATLAS.root_0
2024-11-05 19:31:35 (482281): Guest Log: -rw-r--r--. 1 atlas atlas     2893 Nov  5 17:14 pandaJob.out
2024-11-05 19:31:35 (482281): Guest Log: -rw-------. 1 atlas atlas      424 Nov  5 17:14 setup.sh.local
2024-11-05 19:31:35 (482281): Guest Log: -rw-------. 1 atlas atlas  1021744 Nov  5 17:15 agis_schedconf.cvmfs.json
2024-11-05 19:31:35 (482281): Guest Log: -rw-------. 1 atlas atlas  1602446 Nov  5 17:15 agis_ddmendpoints.agis.ALL.json
2024-11-05 19:31:35 (482281): Guest Log: drwx------. 4 atlas atlas     4096 Nov  5 17:15 pilot3
2024-11-05 19:31:35 (482281): Guest Log: -rw-------. 1 atlas atlas 53924686 Nov  5 18:30 HITS.41843841._009982.pool.root.1
2024-11-05 19:31:35 (482281): Guest Log: -rw-------. 1 atlas atlas       95 Nov  5 18:30 pilot_heartbeat.json
2024-11-05 19:31:35 (482281): Guest Log: -rw-------. 1 atlas atlas     1037 Nov  5 18:31 memory_monitor_summary.json
2024-11-05 19:31:35 (482281): Guest Log: -rw-------. 1 atlas atlas  1202816 Nov  5 18:31 log.41843841._009982.job.log.tgz.1
2024-11-05 19:31:35 (482281): Guest Log: -rw-------. 1 atlas atlas     8573 Nov  5 18:31 heartbeat.json
2024-11-05 19:31:35 (482281): Guest Log: -rw-------. 1 atlas atlas     4347 Nov  5 18:31 pilotlog.txt
2024-11-05 19:31:35 (482281): Guest Log: -rw-------. 1 atlas atlas   370291 Nov  5 18:31 log.41843841._009982.job.log.1
2024-11-05 19:31:35 (482281): Guest Log: -rw-------. 1 atlas atlas      353 Nov  5 18:31 output.list
2024-11-05 19:31:35 (482281): Guest Log: -rw-r--r--. 1 atlas atlas      620 Nov  5 18:31 runtime_log
2024-11-05 19:31:35 (482281): Guest Log: -rw-------. 1 atlas atlas  1597440 Nov  5 18:31 result.tar.gz
2024-11-05 19:31:35 (482281): Guest Log: -rw-r--r--. 1 atlas atlas    11015 Nov  5 18:31 runtime_log.err
2024-11-05 19:31:35 (482281): Guest Log: -rw-------. 1 atlas atlas      681 Nov  5 18:31 ATIKDmPsYS6n9Rq4apOajLDm4fhM0noT9bVorHsSDm873LDmjYMnsn.diag
2024-11-05 19:31:35 (482281): Guest Log: Looking for outputfile HITS.41843841._009982.pool.root.1
2024-11-05 19:31:35 (482281): Guest Log: HITS file was successfully produced
2024-11-05 19:31:35 (482281): Guest Log: -rw-------. 1 atlas atlas 53924686 Nov  5 18:30 /home/atlas/RunAtlas/HITS.41843841._009982.pool.root.1
2024-11-05 19:31:35 (482281): Guest Log: Successfully finished the ATLAS job!
2024-11-05 19:31:35 (482281): Guest Log: Copying the results back to the shared directory!
2024-11-05 19:31:35 (482281): Guest Log:  *** Contents of shared directory: ***
2024-11-05 19:31:35 (482281): Guest Log: total 382536
2024-11-05 19:31:35 (482281): Guest Log: -rw-r--r--. 1 root root 389582048 Nov  5 17:14 ATLAS.root_0
2024-11-05 19:31:35 (482281): Guest Log: -rw-r--r--. 1 root root      6825 Nov  5 17:14 init_data.xml
2024-11-05 19:31:35 (482281): Guest Log: -rw-r--r--. 1 root root    499922 Nov  5 17:14 input.tar.gz
2024-11-05 19:31:35 (482281): Guest Log: -rw-r--r--. 1 root root   1597440 Nov  5 18:31 result.tar.gz
2024-11-05 19:31:35 (482281): Guest Log: -rw-r--r--. 1 root root     17569 Nov  5 17:14 start_atlas.sh
2024-11-05 19:31:35 (482281): Guest Log:  *** Success! Shutting down the machine. ***
2024-11-05 19:31:35 (482281): VM Completion File Detected.
2024-11-05 19:31:35 (482281): Powering off VM.
2024-11-05 19:31:36 (482281): Successfully stopped VM.
2024-11-05 19:31:36 (482281): Deregistering VM. (boinc_55ad991ccabf72e2, slot#0)
2024-11-05 19:31:36 (482281): Removing network bandwidth throttle group from VM.
2024-11-05 19:31:36 (482281): Removing VM from VirtualBox.
19:31:41 (482281): called boinc_finish(0)

</stderr_txt>
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