Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2024-11-05 20:09:39 (16096): Detected: vboxwrapper 26206
2024-11-05 20:09:39 (16096): Detected: BOINC client v8.0.2
2024-11-05 20:09:40 (16096): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2024-11-05 20:09:40 (16096): Successfully copied 'init_data.xml' to the shared directory.
2024-11-05 20:09:41 (16096): Create VM. (boinc_fbf0dc45c3e858d5, slot#2)
2024-11-05 20:09:43 (16096): Setting Memory Size for VM. (4800MB)
2024-11-05 20:09:43 (16096): Setting CPU Count for VM. (8)
2024-11-05 20:09:44 (16096): Setting Chipset Options for VM.
2024-11-05 20:09:44 (16096): Setting Graphics Controller Options for VM.
2024-11-05 20:09:45 (16096): Setting Boot Options for VM.
2024-11-05 20:09:45 (16096): Setting Network Configuration for NAT.
2024-11-05 20:09:46 (16096): Enabling VM Network Access.
2024-11-05 20:09:46 (16096): Disabling USB Support for VM.
2024-11-05 20:09:47 (16096): Disabling COM Port Support for VM.
2024-11-05 20:09:48 (16096): Disabling LPT Port Support for VM.
2024-11-05 20:09:48 (16096): Disabling Audio Support for VM.
2024-11-05 20:09:48 (16096): Disabling Clipboard Support for VM.
2024-11-05 20:09:49 (16096): Disabling Drag and Drop Support for VM.
2024-11-05 20:09:49 (16096): Adding storage controller(s) to VM.
2024-11-05 20:09:49 (16096): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-11-05 20:09:50 (16096): Adding VirtualBox Guest Additions to VM.
2024-11-05 20:09:50 (16096): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-11-05 20:09:51 (16096): forwarding host port 54995 to guest port 80
2024-11-05 20:09:51 (16096): Enabling remote desktop for VM.
2024-11-05 20:09:51 (16096): Required extension pack not installed, remote desktop not enabled.
2024-11-05 20:09:51 (16096): Enabling shared directory for VM.
2024-11-05 20:09:52 (16096): Starting VM using VBoxManage interface. (boinc_fbf0dc45c3e858d5, slot#2)
2024-11-05 20:09:56 (16096): Successfully started VM. (PID = '8648')
2024-11-05 20:09:56 (16096): Reporting VM Process ID to BOINC.
2024-11-05 20:09:56 (16096): Guest Log: BIOS: VirtualBox 7.1.4
2024-11-05 20:09:56 (16096): Guest Log: CPUID EDX: 0x178bfbff
2024-11-05 20:09:56 (16096): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-11-05 20:09:56 (16096): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-11-05 20:09:56 (16096): VM state change detected. (old = 'poweredoff', new = 'running')
2024-11-05 20:09:56 (16096): Detected: Web Application Enabled (http://localhost:54995)
2024-11-05 20:09:56 (16096): Preference change detected
2024-11-05 20:09:56 (16096): Setting CPU throttle for VM. (100%)
2024-11-05 20:09:56 (16096): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 300 seconds) or (Vbox_job.xml: 900 seconds))
2024-11-05 20:09:58 (16096): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-11-05 20:09:58 (16096): Guest Log: BIOS: Booting from Hard Disk...
2024-11-05 20:10:06 (16096): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-11-05 20:10:06 (16096): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-11-05 20:10:07 (16096): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-11-05 20:10:07 (16096): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-11-05 20:10:07 (16096): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-11-05 20:10:07 (16096): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-11-05 20:10:07 (16096): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-11-05 20:10:07 (16096): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-11-05 20:10:07 (16096): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-11-05 20:10:07 (16096): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-11-05 20:10:07 (16096): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-11-05 20:10:07 (16096): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-11-05 20:10:07 (16096): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-11-05 20:10:07 (16096): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-11-05 20:10:07 (16096): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-11-05 20:10:07 (16096): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-11-05 20:10:07 (16096): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-11-05 20:10:07 (16096): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-11-05 20:10:07 (16096): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-11-05 20:10:07 (16096): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-11-05 20:10:07 (16096): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-11-05 20:10:07 (16096): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-11-05 20:10:07 (16096): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-11-05 20:10:07 (16096): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-11-05 20:10:07 (16096): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-11-05 20:10:07 (16096): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-11-05 20:10:07 (16096): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-11-05 20:10:07 (16096): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-11-05 20:10:07 (16096): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-11-05 20:10:07 (16096): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-11-05 20:10:07 (16096): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-11-05 20:10:07 (16096): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-11-05 20:10:20 (16096): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-11-05 20:10:20 (16096): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-11-05 20:11:26 (16096): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-11-05 20:11:26 (16096): Guest Log: 00:00:00.000085 main     Log opened 2024-11-05T20:11:24.755609000Z
2024-11-05 20:11:26 (16096): Guest Log: 00:00:00.000170 main     OS Product: Linux
2024-11-05 20:11:26 (16096): Guest Log: 00:00:00.000191 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-11-05 20:11:26 (16096): Guest Log: 00:00:00.000205 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-11-05 20:11:26 (16096): Guest Log: 00:00:00.000221 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-11-05 20:11:26 (16096): Guest Log: 00:00:00.000221 main     Process ID: 1399
2024-11-05 20:11:26 (16096): Guest Log: 00:00:00.000221 main     Package type: LINUX_64BITS_GENERIC
2024-11-05 20:11:26 (16096): Guest Log: 00:00:00.000580 main     5.2.32 r132073 started. Verbose level = 0
2024-11-05 20:11:27 (16096): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-11-05 20:11:27 (16096): Guest Log: [INFO] Mounting shared directory
2024-11-05 20:11:27 (16096): Guest Log: [INFO] Checking for init_data.xml
2024-11-05 20:11:36 (16096): Guest Log: 00:00:10.003863 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 230 693 698 000ns (GuestNow=1 730 830 254 063 173 000 ns GuestLast=1 730 837 484 756 871 000 ns fSetTimeLastLoop=true )
2024-11-05 20:12:46 (16096): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-11-05 20:12:46 (16096): Guest Log: [INFO] Detected branch: prod
2024-11-05 20:12:51 (16096): Guest Log: This is the prod version of the ATLAS job wrapper
2024-11-05 20:12:51 (16096): Guest Log: Copying input files
2024-11-05 20:12:52 (16096): Guest Log: Copied input files into RunAtlas.
2024-11-05 20:12:52 (16096): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-11-05 20:12:52 (16096): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-11-05 20:12:52 (16096): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-11-05 20:12:52 (16096): Guest Log: Further information can be found at the LHC@home message board.
2024-11-05 20:14:40 (16096): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-11-05 20:14:46 (16096): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-11-05 20:14:46 (16096): Guest Log: 2.6.3.0 1705 2 29836 139134 4 1 3119887 4096000 0 65024 0 0 n/a 1164 47 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-11-05 20:14:50 (16096): Guest Log: copied the webapp to /var/www
2024-11-05 20:14:50 (16096): Guest Log: ATHENA_PROC_NUMBER=8
2024-11-05 20:14:50 (16096): Guest Log: ATHENA_CORE_NUMBER=8
2024-11-05 20:14:56 (16096): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-11-05 20:14:56 (16096): Guest Log:  *** Starting ATLAS job. (PandaID=6390081178 taskID=41843965) ***
2024-11-05 20:19:59 (16096): VM state change detected. (old = 'running', new = 'paused')
2024-11-05 23:53:29 (16096): VM state change detected. (old = 'paused', new = 'running')
2024-11-05 23:53:37 (16096): Guest Log: 00:08:40.599392 timesync vgsvcTimeSyncWorker: Radical host time change: 12 817 824 000 000ns (HostNow=1 730 843 566 664 000 000 ns HostLast=1 730 830 748 840 000 000 ns)
2024-11-05 23:53:47 (16096): Guest Log: 00:08:50.599797 timesync vgsvcTimeSyncWorker: Radical guest time change: 12 812 005 706 000ns (GuestNow=1 730 843 576 664 570 000 ns GuestLast=1 730 830 764 658 864 000 ns fSetTimeLastLoop=true )
2024-11-06 00:53:14 (16096): Guest Log:  *** Job finished ***
2024-11-06 00:53:14 (16096): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-11-06 00:53:14 (16096): Guest Log: 2024-11-05 22:52:13,101 | INFO     | [payload] failed_post thread has finished
2024-11-06 00:53:14 (16096): Guest Log: 2024-11-05 22:52:13,256 | INFO     | [data] copytool_in thread has finished
2024-11-06 00:53:14 (16096): Guest Log: 2024-11-05 22:52:15,490 | INFO     | [data] queue_monitor thread has finished
2024-11-06 00:53:14 (16096): Guest Log: 2024-11-05 22:52:16,669 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140459219273536)>', '<ExcThread(monitor, started 140457963149056)>']
2024-11-06 00:53:14 (16096): Guest Log: 2024-11-05 22:52:17,586 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-11-06 00:53:14 (16096): Guest Log: 2024-11-05 22:52:17,586 | INFO     | [monitor] control thread has ended
2024-11-06 00:53:14 (16096): Guest Log: 2024-11-05 22:52:21,702 | INFO     | all workflow threads have been joined
2024-11-06 00:53:14 (16096): Guest Log: 2024-11-05 22:52:21,702 | INFO     | end of generic workflow (traces error code: 0)
2024-11-06 00:53:14 (16096): Guest Log: 2024-11-05 22:52:21,702 | INFO     | traces error code: 0
2024-11-06 00:53:14 (16096): Guest Log: 2024-11-05 22:52:21,702 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-11-06 00:53:14 (16096): Guest Log: 2024-11-05 22:52:22,148 [wrapper] ==== pilot stdout END ====
2024-11-06 00:53:14 (16096): Guest Log: 2024-11-05 22:52:22,151 [wrapper] ==== wrapper stdout RESUME ====
2024-11-06 00:53:14 (16096): Guest Log: 2024-11-05 22:52:22,154 [wrapper] pilotpid: 6142
2024-11-06 00:53:14 (16096): Guest Log: 2024-11-05 22:52:22,157 [wrapper] Pilot exit status: 0
2024-11-06 00:53:14 (16096): Guest Log: 2024-11-05 22:52:22,235 [wrapper] pandaids: 6390081178
2024-11-06 00:53:14 (16096): Guest Log: 2024-11-05 22:52:22,255 [wrapper] cleanup supervisor_pilot  5581 6143
2024-11-06 00:53:14 (16096): Guest Log: 2024-11-05 22:52:22,258 [wrapper] Test setup, not cleaning
2024-11-06 00:53:14 (16096): Guest Log: 2024-11-05 22:52:22,260 [wrapper] ==== wrapper stdout END ====
2024-11-06 00:53:14 (16096): Guest Log: 2024-11-05 22:52:22,263 [wrapper] ==== wrapper stderr END ====
2024-11-06 00:53:14 (16096): Guest Log: 2024-11-05 22:52:22,268 [wrapper] apfmon messages muted
2024-11-06 00:53:14 (16096): Guest Log:  *** Error codes and diagnostics ***
2024-11-06 00:53:14 (16096): Guest Log:     "exeErrorCode": 0,
2024-11-06 00:53:14 (16096): Guest Log:     "exeErrorDiag": "",
2024-11-06 00:53:14 (16096): Guest Log:     "pilotErrorCode": 0,
2024-11-06 00:53:14 (16096): Guest Log:     "pilotErrorDiag": "",
2024-11-06 00:53:14 (16096): Guest Log:  *** Listing of results directory ***
2024-11-06 00:53:14 (16096): Guest Log: total 58228
2024-11-06 00:53:14 (16096): Guest Log: -rw-r--r--. 1 atlas atlas   500392 Oct 17 12:43 pilot3.tar.gz
2024-11-06 00:53:14 (16096): Guest Log: -rw-r--r--. 1 atlas atlas     5652 Nov  4 22:53 queuedata.json
2024-11-06 00:53:14 (16096): Guest Log: -rwx------. 1 atlas atlas    34589 Nov  4 22:57 runpilot2-wrapper.sh
2024-11-06 00:53:14 (16096): Guest Log: -rwxr-xr-x. 1 atlas atlas     9322 Nov  5 18:12 init_data.xml
2024-11-06 00:53:14 (16096): Guest Log: -rwxr-xr-x. 1 atlas atlas   513360 Nov  5 18:12 input.tar.gz
2024-11-06 00:53:14 (16096): Guest Log: -rwxr-xr-x. 1 atlas atlas    17569 Nov  5 18:12 start_atlas.sh
2024-11-06 00:53:14 (16096): Guest Log: lrwxrwxrwx. 1 atlas atlas       20 Nov  5 18:12 EVNT.41779548._000010.pool.root.1 -> /data/./ATLAS.root_0
2024-11-06 00:53:14 (16096): Guest Log: -rw-r--r--. 1 atlas atlas     2887 Nov  5 18:14 pandaJob.out
2024-11-06 00:53:14 (16096): Guest Log: -rw-------. 1 atlas atlas      424 Nov  5 18:14 setup.sh.local
2024-11-06 00:53:14 (16096): Guest Log: -rw-------. 1 atlas atlas  1021786 Nov  5 18:18 agis_schedconf.cvmfs.json
2024-11-06 00:53:14 (16096): Guest Log: drwx------. 6 atlas atlas     4096 Nov  5 18:18 pilot3
2024-11-06 00:53:14 (16096): Guest Log: -rw-------. 1 atlas atlas 52731463 Nov  5 22:47 HITS.41843965._003570.pool.root.1
2024-11-06 00:53:14 (16096): Guest Log: -rw-------. 1 atlas atlas     1027 Nov  5 22:47 memory_monitor_summary.json
2024-11-06 00:53:14 (16096): Guest Log: -rw-------. 1 atlas atlas  1602446 Nov  5 22:48 agis_ddmendpoints.agis.ALL.json
2024-11-06 00:53:14 (16096): Guest Log: -rw-------. 1 atlas atlas  1181838 Nov  5 22:48 log.41843965._003570.job.log.tgz.1
2024-11-06 00:53:14 (16096): Guest Log: -rw-------. 1 atlas atlas       98 Nov  5 22:51 pilot_heartbeat.json
2024-11-06 00:53:14 (16096): Guest Log: -rw-------. 1 atlas atlas     8533 Nov  5 22:52 heartbeat.json
2024-11-06 00:53:14 (16096): Guest Log: -rw-------. 1 atlas atlas     4461 Nov  5 22:52 pilotlog.txt
2024-11-06 00:53:14 (16096): Guest Log: -rw-------. 1 atlas atlas   358198 Nov  5 22:52 log.41843965._003570.job.log.1
2024-11-06 00:53:14 (16096): Guest Log: -rw-------. 1 atlas atlas      353 Nov  5 22:52 output.list
2024-11-06 00:53:14 (16096): Guest Log: -rw-r--r--. 1 atlas atlas      620 Nov  5 22:52 runtime_log
2024-11-06 00:53:14 (16096): Guest Log: -rw-------. 1 atlas atlas  1556480 Nov  5 22:52 result.tar.gz
2024-11-06 00:53:14 (16096): Guest Log: -rw-------. 1 atlas atlas      659 Nov  5 22:52 YcoNDmECLS6n9Rq4apOajLDm4fhM0noT9bVorHsSDmpg0LDmlrFGHm.diag
2024-11-06 00:53:14 (16096): Guest Log: -rw-r--r--. 1 atlas atlas    10947 Nov  5 22:52 runtime_log.err
2024-11-06 00:53:14 (16096): Guest Log: Looking for outputfile HITS.41843965._003570.pool.root.1
2024-11-06 00:53:14 (16096): Guest Log: HITS file was successfully produced
2024-11-06 00:53:14 (16096): Guest Log: -rw-------. 1 atlas atlas 52731463 Nov  5 22:47 /home/atlas/RunAtlas/HITS.41843965._003570.pool.root.1
2024-11-06 00:53:15 (16096): Guest Log: Successfully finished the ATLAS job!
2024-11-06 00:53:15 (16096): Guest Log: Copying the results back to the shared directory!
2024-11-06 00:53:15 (16096): Guest Log:  *** Contents of shared directory: ***
2024-11-06 00:53:15 (16096): Guest Log: total 429112
2024-11-06 00:53:15 (16096): Guest Log: -rwxrwxrwx. 1 root root 384573420 Nov  5 18:09 ATLAS.root_0
2024-11-06 00:53:15 (16096): Guest Log: -rwxrwxrwx. 1 root root  52731463 Nov  5  2024 HITS.pool.root.1
2024-11-06 00:53:15 (16096): Guest Log: -rwxrwxrwx. 1 root root      9322 Nov  5 18:09 init_data.xml
2024-11-06 00:53:15 (16096): Guest Log: -rwxrwxrwx. 1 root root    513360 Nov  4 23:39 input.tar.gz
2024-11-06 00:53:15 (16096): Guest Log: -rwxrwxrwx. 1 root root   1556480 Nov  5  2024 result.tar.gz
2024-11-06 00:53:15 (16096): Guest Log: -rwxrwxrwx. 1 root root     17569 Nov  4 23:39 start_atlas.sh
2024-11-06 00:53:15 (16096): Guest Log:  *** Success! Shutting down the machine. ***
2024-11-06 00:53:15 (16096): VM Completion File Detected.
2024-11-06 00:53:15 (16096): Powering off VM.
2024-11-06 00:53:16 (16096): Successfully stopped VM.
2024-11-06 00:53:16 (16096): Deregistering VM. (boinc_fbf0dc45c3e858d5, slot#2)
2024-11-06 00:53:16 (16096): Removing network bandwidth throttle group from VM.
2024-11-06 00:53:16 (16096): Removing VM from VirtualBox.
00:53:21 (16096): called boinc_finish(0)

</stderr_txt>
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