Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:22:11 (274093): wrapper (7.7.26015): starting
10:22:11 (274093): wrapper: running run_atlas (--nthreads 8)
[2024-11-03 10:22:11] Arguments: --nthreads 8
[2024-11-03 10:22:11] Threads: 8
[2024-11-03 10:22:11] Checking for CVMFS
[2024-11-03 10:22:11] Probing /cvmfs/atlas.cern.ch... OK
[2024-11-03 10:22:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-11-03 10:22:11] Running cvmfs_config stat atlas.cern.ch
[2024-11-03 10:22:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-11-03 10:22:11] 2.11.2.0 294477 5933 265048 139061 2 92 9712989 18432001 10882 130560 4 62055210 99.561 65880233 39254 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2024-11-03 10:22:11] CVMFS is ok
[2024-11-03 10:22:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-11-03 10:22:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-11-03 10:22:11] Further information can be found at the LHC@home message board.
[2024-11-03 10:22:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-11-03 10:22:11] Checking for apptainer binary...
[2024-11-03 10:22:11] Using apptainer found in PATH at /usr/bin/apptainer
[2024-11-03 10:22:11] Running /usr/bin/apptainer --version
[2024-11-03 10:22:11] apptainer version 1.3.2-1.el7
[2024-11-03 10:22:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-11-03 10:22:12] c-211-35-1.aglt2.org
[2024-11-03 10:22:12] apptainer works
[2024-11-03 10:22:12] Set ATHENA_PROC_NUMBER=8
[2024-11-03 10:22:12] Set ATHENA_CORE_NUMBER=8
[2024-11-03 10:22:12] Starting ATLAS job with PandaID=6388623805
[2024-11-03 10:22:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-11-03 11:17:31]  *** The last 200 lines of the pilot log: ***
[2024-11-03 11:17:31]  direct_access_wan=False
[2024-11-03 11:17:31]  domain=
[2024-11-03 11:17:31]  filesize=1182821
[2024-11-03 11:17:31]  filetype=log
[2024-11-03 11:17:31]  guid=9a873514-5522-4e87-b69b-d41643841cf9
[2024-11-03 11:17:31]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-11-03 11:17:31]  is_altstaged=None
[2024-11-03 11:17:31]  is_tar=False
[2024-11-03 11:17:31]  lfn=log.41843803._008165.job.log.tgz.1
[2024-11-03 11:17:31]  mtime=0
[2024-11-03 11:17:31]  protocol_id=None
[2024-11-03 11:17:31]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-11-03 11:17:31]  replicas=None
[2024-11-03 11:17:31]  scope=mc16_13TeV
[2024-11-03 11:17:31]  status=None
[2024-11-03 11:17:31]  status_code=0
[2024-11-03 11:17:31]  storage_token=
[2024-11-03 11:17:31]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6388623805/log.41843803._008165.job.log.tgz.1
[2024-11-03 11:17:31]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/2b/af/log.41843803._008165.job.log.tgz.1
[2024-11-03 11:17:31]  workdir=None
[2024-11-03 11:17:31] ]
[2024-11-03 11:17:31] 2024-11-03 16:17:14,285 | INFO     | transferring file log.41843803._008165.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6388623805/log.41843803._008165.job.log.tgz.1 to /tmp/boinchome/slots/
[2024-11-03 11:17:31] 2024-11-03 16:17:14,286 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6388623805/log.41843803._008165.job.log.tgz.1 /tmp/boinchome/slots/3/log.41843803._008165.job
[2024-11-03 11:17:31] 2024-11-03 16:17:14,314 | INFO     | adding to output.list: log.41843803._008165.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/2b/af/log.41843803._008165.job.log.tgz.
[2024-11-03 11:17:31] 2024-11-03 16:17:14,314 | INFO     | alt stage-out settings: ['pl', 'pw', 'w', 'default'], is_unified=False, altstageout=False, remain_files=0, has_altstorage=True
[2024-11-03 11:17:31] 2024-11-03 16:17:14,314 | INFO     | summary of transferred files:
[2024-11-03 11:17:31] 2024-11-03 16:17:14,314 | INFO     |  -- lfn=log.41843803._008165.job.log.tgz.1, status_code=0, status=transferred
[2024-11-03 11:17:31] 2024-11-03 16:17:14,315 | INFO     | stage-out finished correctly
[2024-11-03 11:17:31] 2024-11-03 16:17:14,951 | INFO     | monitor loop #258: job 0:6388623805 is in state 'finished'
[2024-11-03 11:17:31] 2024-11-03 16:17:14,951 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-11-03 11:17:31] 2024-11-03 16:17:15,054 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-11-03 11:17:31] 2024-11-03 16:17:16,079 | INFO     | job 6388623805 has state=finished
[2024-11-03 11:17:31] 2024-11-03 16:17:16,080 | INFO     | preparing for final server update for job 6388623805 in state='finished'
[2024-11-03 11:17:31] 2024-11-03 16:17:16,153 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2024-11-03 11:17:31] 2024-11-03 16:17:16,153 | INFO     | this job has now completed (state=finished)
[2024-11-03 11:17:31] 2024-11-03 16:17:16,153 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-11-03 11:17:31] 2024-11-03 16:17:16,153 | INFO     | log transfer has been attempted: DONE
[2024-11-03 11:17:31] 2024-11-03 16:17:16,154 | INFO     | job 6388623805 has finished - writing final server update
[2024-11-03 11:17:31] 2024-11-03 16:17:16,154 | INFO     | total number of processed events: 50 (read)
[2024-11-03 11:17:31] 2024-11-03 16:17:16,160 | INFO     | executing command: lscpu
[2024-11-03 11:17:31] 2024-11-03 16:17:16,219 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-11-03 11:17:31] 2024-11-03 16:17:16,248 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-11-03 11:17:31] 2024-11-03 16:17:17,454 | INFO     | monitor loop #259: job 0:6388623805 is in state 'finished'
[2024-11-03 11:17:31] 2024-11-03 16:17:17,454 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-11-03 11:17:31] 2024-11-03 16:17:19,007 | INFO     | CPU arch script returned: x86-64-v4
[2024-11-03 11:17:31] 2024-11-03 16:17:19,008 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6388623805/memory_monitor_summary.json (trf name=prmon)
[2024-11-03 11:17:31] 2024-11-03 16:17:19,009 | INFO     | extracted standard info from prmon json
[2024-11-03 11:17:31] 2024-11-03 16:17:19,009 | INFO     | extracted standard memory fields from prmon json
[2024-11-03 11:17:31] 2024-11-03 16:17:19,009 | WARNING  | GPU info not found in prmon json: 'gpu'
[2024-11-03 11:17:31] 2024-11-03 16:17:19,011 | INFO     | fitting pss+swap vs Time
[2024-11-03 11:17:31] 2024-11-03 16:17:19,011 | INFO     | model: linear, x: [1730647669.0, 1730647730.0, 1730647791.0, 1730647852.0, 1730647913.0, 1730647974.0, 1730648035.0, 1730648096.0, 1730648157.0, 1730648218.0, 1730
[2024-11-03 11:17:31] 2024-11-03 16:17:19,011 | INFO     | sum of square deviations: 32179208.0
[2024-11-03 11:17:31] 2024-11-03 16:17:19,011 | INFO     | sum of deviations: 16222396607.999998
[2024-11-03 11:17:31] 2024-11-03 16:17:19,011 | INFO     | mean x: 1730649072.0
[2024-11-03 11:17:31] 2024-11-03 16:17:19,012 | INFO     | mean y: 1482476.4893617022
[2024-11-03 11:17:31] 2024-11-03 16:17:19,012 | INFO     | -- intersect: -872464851538.044
[2024-11-03 11:17:31] 2024-11-03 16:17:19,012 | INFO     | intersect: -872464851538.044
[2024-11-03 11:17:31] 2024-11-03 16:17:19,012 | INFO     | chi2: 6.388146029765472
[2024-11-03 11:17:31] 2024-11-03 16:17:19,012 | INFO     | -- intersect: -872464851538.044
[2024-11-03 11:17:31] 2024-11-03 16:17:19,012 | INFO     | current memory leak: 504.13 B/s (using 47 data points, chi2=6.39)
[2024-11-03 11:17:31] 2024-11-03 16:17:19,012 | INFO     | ..............................
[2024-11-03 11:17:31] 2024-11-03 16:17:19,012 | INFO     | . Timing measurements:
[2024-11-03 11:17:31] 2024-11-03 16:17:19,013 | INFO     | . get job = 0 s
[2024-11-03 11:17:31] 2024-11-03 16:17:19,013 | INFO     | . initial setup = 2 s
[2024-11-03 11:17:31] 2024-11-03 16:17:19,013 | INFO     | . payload setup = 5 s
[2024-11-03 11:17:31] 2024-11-03 16:17:19,013 | INFO     | . stage-in = 0 s
[2024-11-03 11:17:31] 2024-11-03 16:17:19,013 | INFO     | . payload execution = 3269 s
[2024-11-03 11:17:31] 2024-11-03 16:17:19,013 | INFO     | . stage-out = 0 s
[2024-11-03 11:17:31] 2024-11-03 16:17:19,013 | INFO     | . log creation = 0 s
[2024-11-03 11:17:31] 2024-11-03 16:17:19,013 | INFO     | ..............................
[2024-11-03 11:17:31] 2024-11-03 16:17:19,098 | INFO     | 
[2024-11-03 11:17:31] 2024-11-03 16:17:19,098 | INFO     | job summary report
[2024-11-03 11:17:31] 2024-11-03 16:17:19,098 | INFO     | --------------------------------------------------
[2024-11-03 11:17:31] 2024-11-03 16:17:19,098 | INFO     | PanDA job id: 6388623805
[2024-11-03 11:17:31] 2024-11-03 16:17:19,098 | INFO     | task id: 41843803
[2024-11-03 11:17:31] 2024-11-03 16:17:19,098 | INFO     | errors: (none)
[2024-11-03 11:17:31] 2024-11-03 16:17:19,098 | INFO     | status: LOG_TRANSFER = DONE 
[2024-11-03 11:17:31] 2024-11-03 16:17:19,098 | INFO     | pilot state: finished 
[2024-11-03 11:17:31] 2024-11-03 16:17:19,098 | INFO     | transexitcode: 0
[2024-11-03 11:17:31] 2024-11-03 16:17:19,098 | INFO     | exeerrorcode: 0
[2024-11-03 11:17:31] 2024-11-03 16:17:19,098 | INFO     | exeerrordiag: 
[2024-11-03 11:17:31] 2024-11-03 16:17:19,098 | INFO     | exitcode: 0
[2024-11-03 11:17:31] 2024-11-03 16:17:19,099 | INFO     | exitmsg: OK
[2024-11-03 11:17:31] 2024-11-03 16:17:19,099 | INFO     | cpuconsumptiontime: 8082 s
[2024-11-03 11:17:31] 2024-11-03 16:17:19,099 | INFO     | nevents: 50
[2024-11-03 11:17:31] 2024-11-03 16:17:19,099 | INFO     | neventsw: 0
[2024-11-03 11:17:31] 2024-11-03 16:17:19,099 | INFO     | pid: 286526
[2024-11-03 11:17:31] 2024-11-03 16:17:19,099 | INFO     | pgrp: 286526
[2024-11-03 11:17:31] 2024-11-03 16:17:19,099 | INFO     | corecount: 8
[2024-11-03 11:17:31] 2024-11-03 16:17:19,099 | INFO     | event service: False
[2024-11-03 11:17:31] 2024-11-03 16:17:19,099 | INFO     | sizes: {0: 2411718, 1: 2413254, 4: 2413460, 12: 2413488, 3278: 2439893, 3279: 2449097, 3283: 2449263}
[2024-11-03 11:17:31] 2024-11-03 16:17:19,099 | INFO     | --------------------------------------------------
[2024-11-03 11:17:31] 2024-11-03 16:17:19,099 | INFO     | 
[2024-11-03 11:17:31] 2024-11-03 16:17:19,099 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2024-11-03 11:17:31] 2024-11-03 16:17:19,130 | INFO     | queue jobs had 0 job(s) [purged]
[2024-11-03 11:17:31] 2024-11-03 16:17:19,130 | INFO     | queue payloads had 0 job(s) [purged]
[2024-11-03 11:17:31] 2024-11-03 16:17:19,130 | INFO     | queue data_in had 0 job(s) [purged]
[2024-11-03 11:17:31] 2024-11-03 16:17:19,130 | INFO     | queue data_out had 0 job(s) [purged]
[2024-11-03 11:17:31] 2024-11-03 16:17:19,130 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-11-03 11:17:31] 2024-11-03 16:17:19,130 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-11-03 11:17:31] 2024-11-03 16:17:19,130 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-11-03 11:17:31] 2024-11-03 16:17:19,130 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-11-03 11:17:31] 2024-11-03 16:17:19,130 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-11-03 11:17:31] 2024-11-03 16:17:19,131 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-11-03 11:17:31] 2024-11-03 16:17:19,131 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-11-03 11:17:31] 2024-11-03 16:17:19,131 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-11-03 11:17:31] 2024-11-03 16:17:19,131 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-11-03 11:17:31] 2024-11-03 16:17:19,131 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-11-03 11:17:31] 2024-11-03 16:17:19,131 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-11-03 11:17:31] 2024-11-03 16:17:19,131 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-11-03 11:17:31] 2024-11-03 16:17:19,131 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-11-03 11:17:31] 2024-11-03 16:17:19,131 | INFO     | queue completed_jobids has 1 job(s)
[2024-11-03 11:17:31] 2024-11-03 16:17:19,131 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-11-03 11:17:31] 2024-11-03 16:17:19,131 | INFO     | queue messages had 0 job(s) [purged]
[2024-11-03 11:17:31] 2024-11-03 16:17:19,131 | INFO     | job 6388623805 has completed (purged errors)
[2024-11-03 11:17:31] 2024-11-03 16:17:19,131 | INFO     | overall cleanup function is called
[2024-11-03 11:17:31] 2024-11-03 16:17:20,144 | INFO     | --- collectZombieJob: --- 10, [286526]
[2024-11-03 11:17:31] 2024-11-03 16:17:20,144 | INFO     | zombie collector waiting for pid 286526
[2024-11-03 11:17:31] 2024-11-03 16:17:20,144 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-11-03 11:17:31] 2024-11-03 16:17:20,144 | INFO     | collected zombie processes
[2024-11-03 11:17:31] 2024-11-03 16:17:20,144 | INFO     | will attempt to kill all subprocesses of pid=286526
[2024-11-03 11:17:31] 2024-11-03 16:17:20,341 | INFO     | process IDs to be killed: [286526] (in reverse order)
[2024-11-03 11:17:31] 2024-11-03 16:17:20,456 | WARNING  | found no corresponding commands to process id(s)
[2024-11-03 11:17:31] 2024-11-03 16:17:20,456 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-11-03 11:17:31] 2024-11-03 16:17:20,468 | INFO     | did not find any defunct processes belonging to 286526
[2024-11-03 11:17:31] 2024-11-03 16:17:20,479 | INFO     | did not find any defunct processes belonging to 286526
[2024-11-03 11:17:31] 2024-11-03 16:17:20,479 | INFO     | ready for new job
[2024-11-03 11:17:31] 2024-11-03 16:17:20,479 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-11-03 11:17:31] 2024-11-03 16:17:20,481 | INFO     | **************************************
[2024-11-03 11:17:31] 2024-11-03 16:17:20,481 | INFO     | ***  PanDA Pilot version 3.9.1.13  ***
[2024-11-03 11:17:31] 2024-11-03 16:17:20,481 | INFO     | **************************************
[2024-11-03 11:17:31] 2024-11-03 16:17:20,481 | INFO     | 
[2024-11-03 11:17:31] 2024-11-03 16:17:20,487 | INFO     | architecture information:
[2024-11-03 11:17:31] 2024-11-03 16:17:20,487 | INFO     | executing command: cat /etc/os-release
[2024-11-03 11:17:31] 2024-11-03 16:17:20,509 | INFO     | cat /etc/os-release:
[2024-11-03 11:17:31] NAME="CentOS Linux"
[2024-11-03 11:17:31] VERSION="7 (Core)"
[2024-11-03 11:17:31] ID="centos"
[2024-11-03 11:17:31] ID_LIKE="rhel fedora"
[2024-11-03 11:17:31] VERSION_ID="7"
[2024-11-03 11:17:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-11-03 11:17:31] ANSI_COLOR="0;31"
[2024-11-03 11:17:31] CPE_NAME="cpe:/o:centos:centos:7"
[2024-11-03 11:17:31] HOME_URL="https://www.centos.org/"
[2024-11-03 11:17:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-11-03 11:17:31] 
[2024-11-03 11:17:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-11-03 11:17:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-11-03 11:17:31] REDHAT_SUPPORT_PRODUCT="centos"
[2024-11-03 11:17:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-11-03 11:17:31] 
[2024-11-03 11:17:31] 2024-11-03 16:17:20,510 | INFO     | **************************************
[2024-11-03 11:17:31] 2024-11-03 16:17:21,013 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2024-11-03 11:17:31] 2024-11-03 16:17:21,034 | INFO     | sufficient remaining disk space (102129205248 B)
[2024-11-03 11:17:31] 2024-11-03 16:17:21,034 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-11-03 11:17:31] 2024-11-03 16:17:21,035 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-11-03 11:17:31] 2024-11-03 16:17:21,035 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-11-03 11:17:31] 2024-11-03 16:17:21,035 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-11-03 11:17:31] 2024-11-03 16:17:21,036 | INFO     | aborting loop
[2024-11-03 11:17:31] 2024-11-03 16:17:21,129 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-11-03 11:17:31] 2024-11-03 16:17:21,242 | INFO     | all job control threads have been joined
[2024-11-03 11:17:31] 2024-11-03 16:17:21,246 | INFO     | all payload control threads have been joined
[2024-11-03 11:17:31] 2024-11-03 16:17:21,723 | INFO     | all data control threads have been joined
[2024-11-03 11:17:31] 2024-11-03 16:17:21,804 | INFO     | found 0 job(s) in 20 queues
[2024-11-03 11:17:31] 2024-11-03 16:17:21,804 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-11-03 11:17:31] 2024-11-03 16:17:21,804 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-11-03 11:17:31] 2024-11-03 16:17:22,040 | INFO     | [job] retrieve thread has finished
[2024-11-03 11:17:31] 2024-11-03 16:17:22,041 | INFO     | [job] job monitor thread has finished
[2024-11-03 11:17:31] 2024-11-03 16:17:22,042 | INFO     | [job] queue monitor thread has finished
[2024-11-03 11:17:31] 2024-11-03 16:17:22,247 | INFO     | [job] control thread has finished
[2024-11-03 11:17:31] 2024-11-03 16:17:22,251 | INFO     | [payload] control thread has finished
[2024-11-03 11:17:31] 2024-11-03 16:17:22,307 | INFO     | [job] validate thread has finished
[2024-11-03 11:17:31] 2024-11-03 16:17:22,386 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-11-03 11:17:31] 2024-11-03 16:17:22,559 | INFO     | [job] create_data_payload thread has finished
[2024-11-03 11:17:31] 2024-11-03 16:17:22,580 | INFO     | [payload] validate_post thread has finished
[2024-11-03 11:17:31] 2024-11-03 16:17:22,594 | INFO     | [payload] validate_pre thread has finished
[2024-11-03 11:17:31] 2024-11-03 16:17:22,728 | INFO     | [data] control thread has finished
[2024-11-03 11:17:31] 2024-11-03 16:17:22,814 | INFO     | [payload] failed_post thread has finished
[2024-11-03 11:17:31] 2024-11-03 16:17:22,834 | INFO     | [payload] run_realtimelog thread has finished
[2024-11-03 11:17:31] 2024-11-03 16:17:23,092 | INFO     | [data] copytool_in thread has finished
[2024-11-03 11:17:31] 2024-11-03 16:17:23,489 | INFO     | [payload] execute_payloads thread has finished
[2024-11-03 11:17:31] 2024-11-03 16:17:24,392 | INFO     | [data] copytool_out thread has finished
[2024-11-03 11:17:31] 2024-11-03 16:17:25,136 | INFO     | [data] queue_monitor thread has finished
[2024-11-03 11:17:31] 2024-11-03 16:17:26,451 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140494857385792)>', '<ExcThread(monitor, started 140494573758208)>']
[2024-11-03 11:17:31] 2024-11-03 16:17:26,828 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-11-03 11:17:31] 2024-11-03 16:17:26,828 | INFO     | [monitor] control thread has ended
[2024-11-03 11:17:31] 2024-11-03 16:17:31,477 | INFO     | all workflow threads have been joined
[2024-11-03 11:17:31] 2024-11-03 16:17:31,477 | INFO     | end of generic workflow (traces error code: 0)
[2024-11-03 11:17:31] 2024-11-03 16:17:31,477 | INFO     | traces error code: 0
[2024-11-03 11:17:31] 2024-11-03 16:17:31,477 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-11-03 11:17:31] 2024-11-03 16:17:31,592 [wrapper] ==== pilot stdout END ====
[2024-11-03 11:17:31] 2024-11-03 16:17:31,596 [wrapper] ==== wrapper stdout RESUME ====
[2024-11-03 11:17:31] 2024-11-03 16:17:31,599 [wrapper] pilotpid: 278358
[2024-11-03 11:17:31] 2024-11-03 16:17:31,602 [wrapper] Pilot exit status: 0
[2024-11-03 11:17:31] 2024-11-03 16:17:31,613 [wrapper] pandaids: 6388623805
[2024-11-03 11:17:31] 2024-11-03 16:17:31,686 [wrapper] cleanup supervisor_pilot 312764 278359
[2024-11-03 11:17:31] 2024-11-03 16:17:31,690 [wrapper] Test setup, not cleaning
[2024-11-03 11:17:31] 2024-11-03 16:17:31,693 [wrapper] ==== wrapper stdout END ====
[2024-11-03 11:17:31] 2024-11-03 16:17:31,697 [wrapper] ==== wrapper stderr END ====
[2024-11-03 11:17:31] 2024-11-03 16:17:31,702 [wrapper] apfmon messages muted
[2024-11-03 11:17:31]  *** Error codes and diagnostics ***
[2024-11-03 11:17:31]     "exeErrorCode": 0,
[2024-11-03 11:17:31]     "exeErrorDiag": "",
[2024-11-03 11:17:31]     "pilotErrorCode": 0,
[2024-11-03 11:17:31]     "pilotErrorDiag": "",
[2024-11-03 11:17:31]  *** Listing of results directory ***
[2024-11-03 11:17:31] total 424500
[2024-11-03 11:17:31] -rw-r--r-- 1 boincer umatlas    486088 Nov  3 09:56 pilot3.tar.gz
[2024-11-03 11:17:31] -rw-r--r-- 1 boincer umatlas      5652 Nov  3 09:58 queuedata.json
[2024-11-03 11:17:31] -rwx------ 1 boincer umatlas     34589 Nov  3 09:59 runpilot2-wrapper.sh
[2024-11-03 11:17:31] -rw-r--r-- 1 boincer umatlas       100 Nov  3 10:22 wrapper_26015_x86_64-pc-linux-gnu
[2024-11-03 11:17:31] -rwxr-xr-x 1 boincer umatlas      7986 Nov  3 10:22 run_atlas
[2024-11-03 11:17:31] -rw-r--r-- 1 boincer umatlas       105 Nov  3 10:22 job.xml
[2024-11-03 11:17:31] -rw-r--r-- 2 boincer umatlas 379341560 Nov  3 10:22 EVNT.41779858._000006.pool.root.1
[2024-11-03 11:17:31] -rw-r--r-- 2 boincer umatlas     17569 Nov  3 10:22 start_atlas.sh
[2024-11-03 11:17:31] drwxrwx--x 2 boincer umatlas      4096 Nov  3 10:22 shared
[2024-11-03 11:17:31] -rw-r--r-- 2 boincer umatlas    499922 Nov  3 10:22 input.tar.gz
[2024-11-03 11:17:31] -rw-r--r-- 1 boincer umatlas         0 Nov  3 10:22 boinc_lockfile
[2024-11-03 11:17:31] -rw-r--r-- 1 boincer umatlas      2887 Nov  3 10:22 pandaJob.out
[2024-11-03 11:17:31] -rw------- 1 boincer umatlas       467 Nov  3 10:22 setup.sh.local
[2024-11-03 11:17:31] -rw------- 1 boincer umatlas   1029795 Nov  3 10:22 agis_schedconf.cvmfs.json
[2024-11-03 11:17:31] -rw------- 1 boincer umatlas   1602446 Nov  3 10:22 agis_ddmendpoints.agis.ALL.json
[2024-11-03 11:17:31] drwx------ 4 boincer umatlas      4096 Nov  3 10:22 pilot3
[2024-11-03 11:17:31] -rw-r--r-- 1 boincer umatlas       528 Nov  3 11:09 boinc_task_state.xml
[2024-11-03 11:17:31] -rw-r--r-- 1 boincer umatlas      6384 Nov  3 11:11 init_data.xml
[2024-11-03 11:17:31] -rw------- 1 boincer umatlas        95 Nov  3 11:16 pilot_heartbeat.json
[2024-11-03 11:17:31] -rw------- 1 boincer umatlas  48429339 Nov  3 11:17 HITS.41843803._008165.pool.root.1
[2024-11-03 11:17:31] -rw------- 1 boincer umatlas      1046 Nov  3 11:17 memory_monitor_summary.json
[2024-11-03 11:17:31] -rw------- 1 boincer umatlas   1182821 Nov  3 11:17 log.41843803._008165.job.log.tgz.1
[2024-11-03 11:17:31] -rw------- 1 boincer umatlas      8570 Nov  3 11:17 heartbeat.json
[2024-11-03 11:17:31] -rw-r--r-- 1 boincer umatlas      8192 Nov  3 11:17 boinc_mmap_file
[2024-11-03 11:17:31] -rw-r--r-- 1 boincer umatlas        26 Nov  3 11:17 wrapper_checkpoint.txt
[2024-11-03 11:17:31] -rw------- 1 boincer umatlas      4216 Nov  3 11:17 pilotlog.txt
[2024-11-03 11:17:31] -rw------- 1 boincer umatlas    338507 Nov  3 11:17 log.41843803._008165.job.log.1
[2024-11-03 11:17:31] -rw------- 1 boincer umatlas       353 Nov  3 11:17 output.list
[2024-11-03 11:17:31] -rw-r--r-- 1 boincer umatlas       620 Nov  3 11:17 runtime_log
[2024-11-03 11:17:31] -rw------- 1 boincer umatlas   1546240 Nov  3 11:17 result.tar.gz
[2024-11-03 11:17:31] -rw-r--r-- 1 boincer umatlas     11428 Nov  3 11:17 runtime_log.err
[2024-11-03 11:17:31] -rw------- 1 boincer umatlas       657 Nov  3 11:17 3FTNDmbFrR6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmFK1MDmj0gIem.diag
[2024-11-03 11:17:31] -rw-r--r-- 1 boincer umatlas     21132 Nov  3 11:17 stderr.txt
[2024-11-03 11:17:31] HITS file was successfully produced:
[2024-11-03 11:17:31] -rw------- 1 boincer umatlas 48429339 Nov  3 11:17 shared/HITS.pool.root.1
[2024-11-03 11:17:31]  *** Contents of shared directory: ***
[2024-11-03 11:17:31] total 419780
[2024-11-03 11:17:31] -rw-r--r-- 2 boincer umatlas 379341560 Nov  3 10:22 ATLAS.root_0
[2024-11-03 11:17:31] -rw-r--r-- 2 boincer umatlas     17569 Nov  3 10:22 start_atlas.sh
[2024-11-03 11:17:31] -rw-r--r-- 2 boincer umatlas    499922 Nov  3 10:22 input.tar.gz
[2024-11-03 11:17:31] -rw------- 1 boincer umatlas  48429339 Nov  3 11:17 HITS.pool.root.1
[2024-11-03 11:17:31] -rw------- 1 boincer umatlas   1546240 Nov  3 11:17 result.tar.gz
11:17:33 (274093): run_atlas exited; CPU time 8022.019052
11:17:33 (274093): called boinc_finish(0)

</stderr_txt>
]]>

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