Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:02:06 (274088): wrapper (7.7.26015): starting
16:02:06 (274088): wrapper: running run_atlas (--nthreads 8)
[2024-11-02 16:02:06] Arguments: --nthreads 8
[2024-11-02 16:02:06] Threads: 8
[2024-11-02 16:02:06] Checking for CVMFS
[2024-11-02 16:02:06] Probing /cvmfs/atlas.cern.ch... OK
[2024-11-02 16:02:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-11-02 16:02:06] Running cvmfs_config stat atlas.cern.ch
[2024-11-02 16:02:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-11-02 16:02:06] 2.11.2.0 294477 4773 242920 139031 1 93 15490465 18432000 12478 130560 4 47538878 99.447 64915213 39264 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2024-11-02 16:02:06] CVMFS is ok
[2024-11-02 16:02:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-11-02 16:02:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-11-02 16:02:06] Further information can be found at the LHC@home message board.
[2024-11-02 16:02:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-11-02 16:02:06] Checking for apptainer binary...
[2024-11-02 16:02:06] Using apptainer found in PATH at /usr/bin/apptainer
[2024-11-02 16:02:06] Running /usr/bin/apptainer --version
[2024-11-02 16:02:06] apptainer version 1.3.2-1.el7
[2024-11-02 16:02:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-11-02 16:02:07] c-211-35-1.aglt2.org
[2024-11-02 16:02:07] apptainer works
[2024-11-02 16:02:07] Set ATHENA_PROC_NUMBER=8
[2024-11-02 16:02:07] Set ATHENA_CORE_NUMBER=8
[2024-11-02 16:02:07] Starting ATLAS job with PandaID=6387838873
[2024-11-02 16:02:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-11-02 16:59:41]  *** The last 200 lines of the pilot log: ***
[2024-11-02 16:59:41]  ddmendpoint_alt=None
[2024-11-02 16:59:41]  direct_access_lan=False
[2024-11-02 16:59:41]  direct_access_wan=False
[2024-11-02 16:59:41]  domain=
[2024-11-02 16:59:41]  filesize=1180037
[2024-11-02 16:59:41]  filetype=log
[2024-11-02 16:59:41]  guid=0e41f56c-5e41-4ee4-92b9-4764abaab60c
[2024-11-02 16:59:41]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-11-02 16:59:41]  is_altstaged=None
[2024-11-02 16:59:41]  is_tar=False
[2024-11-02 16:59:41]  lfn=log.41843729._013616.job.log.tgz.1
[2024-11-02 16:59:41]  mtime=0
[2024-11-02 16:59:41]  protocol_id=None
[2024-11-02 16:59:41]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-11-02 16:59:41]  replicas=None
[2024-11-02 16:59:41]  scope=mc16_13TeV
[2024-11-02 16:59:41]  status=None
[2024-11-02 16:59:41]  status_code=0
[2024-11-02 16:59:41]  storage_token=
[2024-11-02 16:59:41]  surl=/tmp/boinchome/slots/5/PanDA_Pilot-6387838873/log.41843729._013616.job.log.tgz.1
[2024-11-02 16:59:41]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/dd/ad/log.41843729._013616.job.log.tgz.1
[2024-11-02 16:59:41]  workdir=None
[2024-11-02 16:59:41] ]
[2024-11-02 16:59:41] 2024-11-02 20:59:24,700 | INFO     | transferring file log.41843729._013616.job.log.tgz.1 from /tmp/boinchome/slots/5/PanDA_Pilot-6387838873/log.41843729._013616.job.log.tgz.1 to /tmp/boinchome/slots/
[2024-11-02 16:59:41] 2024-11-02 20:59:24,700 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/5/PanDA_Pilot-6387838873/log.41843729._013616.job.log.tgz.1 /tmp/boinchome/slots/5/log.41843729._013616.job
[2024-11-02 16:59:41] 2024-11-02 20:59:24,725 | INFO     | adding to output.list: log.41843729._013616.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/dd/ad/log.41843729._013616.job.log.tgz.
[2024-11-02 16:59:41] 2024-11-02 20:59:24,726 | INFO     | alt stage-out settings: ['pl', 'pw', 'w', 'default'], is_unified=False, altstageout=False, remain_files=0, has_altstorage=True
[2024-11-02 16:59:41] 2024-11-02 20:59:24,726 | INFO     | summary of transferred files:
[2024-11-02 16:59:41] 2024-11-02 20:59:24,726 | INFO     |  -- lfn=log.41843729._013616.job.log.tgz.1, status_code=0, status=transferred
[2024-11-02 16:59:41] 2024-11-02 20:59:24,726 | INFO     | stage-out finished correctly
[2024-11-02 16:59:41] 2024-11-02 20:59:25,263 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-11-02 16:59:41] 2024-11-02 20:59:27,163 | INFO     | job 6387838873 has state=finished
[2024-11-02 16:59:41] 2024-11-02 20:59:27,163 | INFO     | preparing for final server update for job 6387838873 in state='finished'
[2024-11-02 16:59:41] 2024-11-02 20:59:27,164 | INFO     | this job has now completed (state=finished)
[2024-11-02 16:59:41] 2024-11-02 20:59:27,164 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-11-02 16:59:41] 2024-11-02 20:59:27,164 | INFO     | log transfer has been attempted: DONE
[2024-11-02 16:59:41] 2024-11-02 20:59:27,164 | INFO     | job 6387838873 has finished - writing final server update
[2024-11-02 16:59:41] 2024-11-02 20:59:27,164 | INFO     | total number of processed events: 50 (read)
[2024-11-02 16:59:41] 2024-11-02 20:59:27,168 | INFO     | executing command: lscpu
[2024-11-02 16:59:41] 2024-11-02 20:59:27,204 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-11-02 16:59:41] 2024-11-02 20:59:27,225 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-11-02 16:59:41] 2024-11-02 20:59:29,901 | INFO     | CPU arch script returned: x86-64-v4
[2024-11-02 16:59:41] 2024-11-02 20:59:29,902 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6387838873/memory_monitor_summary.json (trf name=prmon)
[2024-11-02 16:59:41] 2024-11-02 20:59:29,902 | INFO     | extracted standard info from prmon json
[2024-11-02 16:59:41] 2024-11-02 20:59:29,902 | INFO     | extracted standard memory fields from prmon json
[2024-11-02 16:59:41] 2024-11-02 20:59:29,902 | WARNING  | GPU info not found in prmon json: 'gpu'
[2024-11-02 16:59:41] 2024-11-02 20:59:29,904 | INFO     | fitting pss+swap vs Time
[2024-11-02 16:59:41] 2024-11-02 20:59:29,908 | INFO     | model: linear, x: [1730578064.0, 1730578125.0, 1730578186.0, 1730578247.0, 1730578308.0, 1730578369.0, 1730578430.0, 1730578491.0, 1730578552.0, 1730578613.0, 1730
[2024-11-02 16:59:41] 2024-11-02 20:59:29,908 | INFO     | sum of square deviations: 36465800.0
[2024-11-02 16:59:41] 2024-11-02 20:59:29,908 | INFO     | sum of deviations: 17248499812.0
[2024-11-02 16:59:41] 2024-11-02 20:59:29,908 | INFO     | mean x: 1730579528.0
[2024-11-02 16:59:41] 2024-11-02 20:59:29,908 | INFO     | mean y: 1485929.857142857
[2024-11-02 16:59:41] 2024-11-02 20:59:29,909 | INFO     | -- intersect: -818571002905.1348
[2024-11-02 16:59:41] 2024-11-02 20:59:29,909 | INFO     | intersect: -818571002905.1348
[2024-11-02 16:59:41] 2024-11-02 20:59:29,909 | INFO     | chi2: 6.603671578750694
[2024-11-02 16:59:41] 2024-11-02 20:59:29,909 | INFO     | -- intersect: -818571002905.1348
[2024-11-02 16:59:41] 2024-11-02 20:59:29,909 | INFO     | current memory leak: 473.00 B/s (using 49 data points, chi2=6.60)
[2024-11-02 16:59:41] 2024-11-02 20:59:29,909 | INFO     | ..............................
[2024-11-02 16:59:41] 2024-11-02 20:59:29,910 | INFO     | . Timing measurements:
[2024-11-02 16:59:41] 2024-11-02 20:59:29,910 | INFO     | . get job = 0 s
[2024-11-02 16:59:41] 2024-11-02 20:59:29,910 | INFO     | . initial setup = 2 s
[2024-11-02 16:59:41] 2024-11-02 20:59:29,910 | INFO     | . payload setup = 5 s
[2024-11-02 16:59:41] 2024-11-02 20:59:29,910 | INFO     | . stage-in = 0 s
[2024-11-02 16:59:41] 2024-11-02 20:59:29,910 | INFO     | . payload execution = 3404 s
[2024-11-02 16:59:41] 2024-11-02 20:59:29,910 | INFO     | . stage-out = 0 s
[2024-11-02 16:59:41] 2024-11-02 20:59:29,910 | INFO     | . log creation = 0 s
[2024-11-02 16:59:41] 2024-11-02 20:59:29,910 | INFO     | ..............................
[2024-11-02 16:59:41] 2024-11-02 20:59:29,989 | INFO     | 
[2024-11-02 16:59:41] 2024-11-02 20:59:29,989 | INFO     | job summary report
[2024-11-02 16:59:41] 2024-11-02 20:59:29,989 | INFO     | --------------------------------------------------
[2024-11-02 16:59:41] 2024-11-02 20:59:29,989 | INFO     | PanDA job id: 6387838873
[2024-11-02 16:59:41] 2024-11-02 20:59:29,989 | INFO     | task id: 41843729
[2024-11-02 16:59:41] 2024-11-02 20:59:29,989 | INFO     | errors: (none)
[2024-11-02 16:59:41] 2024-11-02 20:59:29,989 | INFO     | status: LOG_TRANSFER = DONE 
[2024-11-02 16:59:41] 2024-11-02 20:59:29,989 | INFO     | pilot state: finished 
[2024-11-02 16:59:41] 2024-11-02 20:59:29,989 | INFO     | transexitcode: 0
[2024-11-02 16:59:41] 2024-11-02 20:59:29,990 | INFO     | exeerrorcode: 0
[2024-11-02 16:59:41] 2024-11-02 20:59:29,990 | INFO     | exeerrordiag: 
[2024-11-02 16:59:41] 2024-11-02 20:59:29,990 | INFO     | exitcode: 0
[2024-11-02 16:59:41] 2024-11-02 20:59:29,990 | INFO     | exitmsg: OK
[2024-11-02 16:59:41] 2024-11-02 20:59:29,990 | INFO     | cpuconsumptiontime: 8645 s
[2024-11-02 16:59:41] 2024-11-02 20:59:29,990 | INFO     | nevents: 50
[2024-11-02 16:59:41] 2024-11-02 20:59:29,990 | INFO     | neventsw: 0
[2024-11-02 16:59:41] 2024-11-02 20:59:29,990 | INFO     | pid: 286885
[2024-11-02 16:59:41] 2024-11-02 20:59:29,990 | INFO     | pgrp: 286885
[2024-11-02 16:59:41] 2024-11-02 20:59:29,990 | INFO     | corecount: 8
[2024-11-02 16:59:41] 2024-11-02 20:59:29,990 | INFO     | event service: False
[2024-11-02 16:59:41] 2024-11-02 20:59:29,990 | INFO     | sizes: {0: 2412949, 1: 2413148, 4: 2413354, 11: 2413382, 3413: 2439779, 3414: 2448799, 3415: 2448983, 3419: 2449205}
[2024-11-02 16:59:41] 2024-11-02 20:59:29,990 | INFO     | --------------------------------------------------
[2024-11-02 16:59:41] 2024-11-02 20:59:29,991 | INFO     | 
[2024-11-02 16:59:41] 2024-11-02 20:59:29,991 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2024-11-02 16:59:41] 2024-11-02 20:59:30,017 | INFO     | queue jobs had 0 job(s) [purged]
[2024-11-02 16:59:41] 2024-11-02 20:59:30,018 | INFO     | queue payloads had 0 job(s) [purged]
[2024-11-02 16:59:41] 2024-11-02 20:59:30,018 | INFO     | queue data_in had 0 job(s) [purged]
[2024-11-02 16:59:41] 2024-11-02 20:59:30,018 | INFO     | queue data_out had 0 job(s) [purged]
[2024-11-02 16:59:41] 2024-11-02 20:59:30,018 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-11-02 16:59:41] 2024-11-02 20:59:30,018 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-11-02 16:59:41] 2024-11-02 20:59:30,018 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-11-02 16:59:41] 2024-11-02 20:59:30,018 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-11-02 16:59:41] 2024-11-02 20:59:30,018 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-11-02 16:59:41] 2024-11-02 20:59:30,019 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-11-02 16:59:41] 2024-11-02 20:59:30,019 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-11-02 16:59:41] 2024-11-02 20:59:30,019 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-11-02 16:59:41] 2024-11-02 20:59:30,019 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-11-02 16:59:41] 2024-11-02 20:59:30,019 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-11-02 16:59:41] 2024-11-02 20:59:30,019 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-11-02 16:59:41] 2024-11-02 20:59:30,019 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-11-02 16:59:41] 2024-11-02 20:59:30,019 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-11-02 16:59:41] 2024-11-02 20:59:30,019 | INFO     | queue completed_jobids has 1 job(s)
[2024-11-02 16:59:41] 2024-11-02 20:59:30,020 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-11-02 16:59:41] 2024-11-02 20:59:30,020 | INFO     | queue messages had 0 job(s) [purged]
[2024-11-02 16:59:41] 2024-11-02 20:59:30,020 | INFO     | job 6387838873 has completed (purged errors)
[2024-11-02 16:59:41] 2024-11-02 20:59:30,020 | INFO     | overall cleanup function is called
[2024-11-02 16:59:41] 2024-11-02 20:59:30,086 | WARNING  | process 286885 is no longer using CPU - aborting
[2024-11-02 16:59:41] 2024-11-02 20:59:30,086 | INFO     | aborting job monitoring since job object (job id=6387838873) has expired
[2024-11-02 16:59:41] 2024-11-02 20:59:31,035 | INFO     | --- collectZombieJob: --- 10, [286885]
[2024-11-02 16:59:41] 2024-11-02 20:59:31,036 | INFO     | zombie collector waiting for pid 286885
[2024-11-02 16:59:41] 2024-11-02 20:59:31,036 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-11-02 16:59:41] 2024-11-02 20:59:31,036 | INFO     | collected zombie processes
[2024-11-02 16:59:41] 2024-11-02 20:59:31,036 | INFO     | will attempt to kill all subprocesses of pid=286885
[2024-11-02 16:59:41] 2024-11-02 20:59:31,167 | INFO     | process IDs to be killed: [286885] (in reverse order)
[2024-11-02 16:59:41] 2024-11-02 20:59:31,256 | WARNING  | found no corresponding commands to process id(s)
[2024-11-02 16:59:41] 2024-11-02 20:59:31,257 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-11-02 16:59:41] 2024-11-02 20:59:31,269 | INFO     | did not find any defunct processes belonging to 286885
[2024-11-02 16:59:41] 2024-11-02 20:59:31,279 | INFO     | did not find any defunct processes belonging to 286885
[2024-11-02 16:59:41] 2024-11-02 20:59:31,279 | INFO     | ready for new job
[2024-11-02 16:59:41] 2024-11-02 20:59:31,280 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-11-02 16:59:41] 2024-11-02 20:59:31,281 | INFO     | **************************************
[2024-11-02 16:59:41] 2024-11-02 20:59:31,281 | INFO     | ***  PanDA Pilot version 3.9.1.13  ***
[2024-11-02 16:59:41] 2024-11-02 20:59:31,281 | INFO     | **************************************
[2024-11-02 16:59:41] 2024-11-02 20:59:31,282 | INFO     | 
[2024-11-02 16:59:41] 2024-11-02 20:59:31,287 | INFO     | architecture information:
[2024-11-02 16:59:41] 2024-11-02 20:59:31,288 | INFO     | executing command: cat /etc/os-release
[2024-11-02 16:59:41] 2024-11-02 20:59:31,307 | INFO     | cat /etc/os-release:
[2024-11-02 16:59:41] NAME="CentOS Linux"
[2024-11-02 16:59:41] VERSION="7 (Core)"
[2024-11-02 16:59:41] ID="centos"
[2024-11-02 16:59:41] ID_LIKE="rhel fedora"
[2024-11-02 16:59:41] VERSION_ID="7"
[2024-11-02 16:59:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-11-02 16:59:41] ANSI_COLOR="0;31"
[2024-11-02 16:59:41] CPE_NAME="cpe:/o:centos:centos:7"
[2024-11-02 16:59:41] HOME_URL="https://www.centos.org/"
[2024-11-02 16:59:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-11-02 16:59:41] 
[2024-11-02 16:59:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-11-02 16:59:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-11-02 16:59:41] REDHAT_SUPPORT_PRODUCT="centos"
[2024-11-02 16:59:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-11-02 16:59:41] 
[2024-11-02 16:59:41] 2024-11-02 20:59:31,308 | INFO     | **************************************
[2024-11-02 16:59:41] 2024-11-02 20:59:31,811 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2024-11-02 16:59:41] 2024-11-02 20:59:31,837 | INFO     | sufficient remaining disk space (102268665856 B)
[2024-11-02 16:59:41] 2024-11-02 20:59:31,837 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-11-02 16:59:41] 2024-11-02 20:59:31,837 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-11-02 16:59:41] 2024-11-02 20:59:31,837 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-11-02 16:59:41] 2024-11-02 20:59:31,838 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-11-02 16:59:41] 2024-11-02 20:59:31,838 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-11-02 16:59:41] 2024-11-02 20:59:31,838 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-11-02 16:59:41] 2024-11-02 20:59:31,839 | INFO     | found 0 job(s) in 20 queues
[2024-11-02 16:59:41] 2024-11-02 20:59:31,840 | INFO     | aborting loop
[2024-11-02 16:59:41] 2024-11-02 20:59:31,840 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-11-02 16:59:41] 2024-11-02 20:59:31,840 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-11-02 16:59:41] 2024-11-02 20:59:32,237 | INFO     | all data control threads have been joined
[2024-11-02 16:59:41] 2024-11-02 20:59:32,792 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-11-02 16:59:41] 2024-11-02 20:59:32,843 | INFO     | [job] retrieve thread has finished
[2024-11-02 16:59:41] 2024-11-02 20:59:32,844 | INFO     | [job] job monitor thread has finished
[2024-11-02 16:59:41] 2024-11-02 20:59:32,845 | INFO     | [job] queue monitor thread has finished
[2024-11-02 16:59:41] 2024-11-02 20:59:32,889 | INFO     | [data] copytool_in thread has finished
[2024-11-02 16:59:41] 2024-11-02 20:59:32,904 | INFO     | all payload control threads have been joined
[2024-11-02 16:59:41] 2024-11-02 20:59:33,018 | INFO     | [payload] validate_post thread has finished
[2024-11-02 16:59:41] 2024-11-02 20:59:33,242 | INFO     | [data] control thread has finished
[2024-11-02 16:59:41] 2024-11-02 20:59:33,482 | INFO     | all job control threads have been joined
[2024-11-02 16:59:41] 2024-11-02 20:59:33,878 | INFO     | [payload] execute_payloads thread has finished
[2024-11-02 16:59:41] 2024-11-02 20:59:33,900 | INFO     | [payload] failed_post thread has finished
[2024-11-02 16:59:41] 2024-11-02 20:59:33,909 | INFO     | [payload] control thread has finished
[2024-11-02 16:59:41] 2024-11-02 20:59:34,021 | INFO     | [job] validate thread has finished
[2024-11-02 16:59:41] 2024-11-02 20:59:34,139 | INFO     | [payload] run_realtimelog thread has finished
[2024-11-02 16:59:41] 2024-11-02 20:59:34,172 | INFO     | [job] create_data_payload thread has finished
[2024-11-02 16:59:41] 2024-11-02 20:59:34,228 | INFO     | [payload] validate_pre thread has finished
[2024-11-02 16:59:41] 2024-11-02 20:59:34,488 | INFO     | [job] control thread has finished
[2024-11-02 16:59:41] 2024-11-02 20:59:34,799 | INFO     | [data] copytool_out thread has finished
[2024-11-02 16:59:41] 2024-11-02 20:59:35,845 | INFO     | [data] queue_monitor thread has finished
[2024-11-02 16:59:41] 2024-11-02 20:59:36,459 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139960483120960)>', '<ExcThread(monitor, started 139960189409024)>']
[2024-11-02 16:59:41] 2024-11-02 20:59:36,864 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-11-02 16:59:41] 2024-11-02 20:59:36,864 | INFO     | [monitor] control thread has ended
[2024-11-02 16:59:41] 2024-11-02 20:59:41,484 | INFO     | all workflow threads have been joined
[2024-11-02 16:59:41] 2024-11-02 20:59:41,485 | INFO     | end of generic workflow (traces error code: 0)
[2024-11-02 16:59:41] 2024-11-02 20:59:41,485 | INFO     | traces error code: 0
[2024-11-02 16:59:41] 2024-11-02 20:59:41,486 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-11-02 16:59:41] 2024-11-02 20:59:41,599 [wrapper] ==== pilot stdout END ====
[2024-11-02 16:59:41] 2024-11-02 20:59:41,602 [wrapper] ==== wrapper stdout RESUME ====
[2024-11-02 16:59:41] 2024-11-02 20:59:41,605 [wrapper] pilotpid: 278408
[2024-11-02 16:59:41] 2024-11-02 20:59:41,608 [wrapper] Pilot exit status: 0
[2024-11-02 16:59:41] 2024-11-02 20:59:41,619 [wrapper] pandaids: 6387838873
[2024-11-02 16:59:41] 2024-11-02 20:59:41,680 [wrapper] cleanup supervisor_pilot  16048 278409
[2024-11-02 16:59:41] 2024-11-02 20:59:41,683 [wrapper] Test setup, not cleaning
[2024-11-02 16:59:41] 2024-11-02 20:59:41,685 [wrapper] ==== wrapper stdout END ====
[2024-11-02 16:59:41] 2024-11-02 20:59:41,688 [wrapper] ==== wrapper stderr END ====
[2024-11-02 16:59:41] 2024-11-02 20:59:41,692 [wrapper] apfmon messages muted
[2024-11-02 16:59:41]  *** Error codes and diagnostics ***
[2024-11-02 16:59:41]     "exeErrorCode": 0,
[2024-11-02 16:59:41]     "exeErrorDiag": "",
[2024-11-02 16:59:41]     "pilotErrorCode": 0,
[2024-11-02 16:59:41]     "pilotErrorDiag": "",
[2024-11-02 16:59:41]  *** Listing of results directory ***
[2024-11-02 16:59:41] total 397228
[2024-11-02 16:59:41] -rw-r--r-- 1 boincer umatlas    486088 Nov  2 15:31 pilot3.tar.gz
[2024-11-02 16:59:41] -rwx------ 1 boincer umatlas     34589 Nov  2 15:37 runpilot2-wrapper.sh
[2024-11-02 16:59:41] -rw-r--r-- 1 boincer umatlas      5652 Nov  2 15:39 queuedata.json
[2024-11-02 16:59:41] -rw-r--r-- 1 boincer umatlas       100 Nov  2 16:02 wrapper_26015_x86_64-pc-linux-gnu
[2024-11-02 16:59:41] -rwxr-xr-x 1 boincer umatlas      7986 Nov  2 16:02 run_atlas
[2024-11-02 16:59:41] -rw-r--r-- 1 boincer umatlas       105 Nov  2 16:02 job.xml
[2024-11-02 16:59:41] -rw-r--r-- 2 boincer umatlas 356427250 Nov  2 16:02 EVNT.41780312._000003.pool.root.1
[2024-11-02 16:59:41] -rw-r--r-- 2 boincer umatlas     17569 Nov  2 16:02 start_atlas.sh
[2024-11-02 16:59:41] drwxrwx--x 2 boincer umatlas      4096 Nov  2 16:02 shared
[2024-11-02 16:59:41] -rw-r--r-- 2 boincer umatlas    499912 Nov  2 16:02 input.tar.gz
[2024-11-02 16:59:41] -rw-r--r-- 1 boincer umatlas         0 Nov  2 16:02 boinc_lockfile
[2024-11-02 16:59:41] -rw-r--r-- 1 boincer umatlas      2847 Nov  2 16:02 pandaJob.out
[2024-11-02 16:59:41] -rw------- 1 boincer umatlas       467 Nov  2 16:02 setup.sh.local
[2024-11-02 16:59:41] -rw------- 1 boincer umatlas   1029687 Nov  2 16:02 agis_schedconf.cvmfs.json
[2024-11-02 16:59:41] -rw------- 1 boincer umatlas   1602446 Nov  2 16:02 agis_ddmendpoints.agis.ALL.json
[2024-11-02 16:59:41] drwx------ 4 boincer umatlas      4096 Nov  2 16:02 pilot3
[2024-11-02 16:59:41] -rw-r--r-- 1 boincer umatlas       528 Nov  2 16:49 boinc_task_state.xml
[2024-11-02 16:59:41] -rw-r--r-- 1 boincer umatlas      6384 Nov  2 16:54 init_data.xml
[2024-11-02 16:59:41] -rw-r--r-- 1 boincer umatlas      8192 Nov  2 16:59 boinc_mmap_file
[2024-11-02 16:59:41] -rw-r--r-- 1 boincer umatlas        26 Nov  2 16:59 wrapper_checkpoint.txt
[2024-11-02 16:59:41] -rw------- 1 boincer umatlas  43407786 Nov  2 16:59 HITS.41843729._013616.pool.root.1
[2024-11-02 16:59:41] -rw------- 1 boincer umatlas      1046 Nov  2 16:59 memory_monitor_summary.json
[2024-11-02 16:59:41] -rw------- 1 boincer umatlas        95 Nov  2 16:59 pilot_heartbeat.json
[2024-11-02 16:59:41] -rw------- 1 boincer umatlas   1180037 Nov  2 16:59 log.41843729._013616.job.log.tgz.1
[2024-11-02 16:59:41] -rw------- 1 boincer umatlas      8562 Nov  2 16:59 heartbeat.json
[2024-11-02 16:59:41] -rw------- 1 boincer umatlas      4339 Nov  2 16:59 pilotlog.txt
[2024-11-02 16:59:41] -rw------- 1 boincer umatlas    349703 Nov  2 16:59 log.41843729._013616.job.log.1
[2024-11-02 16:59:41] -rw------- 1 boincer umatlas       353 Nov  2 16:59 output.list
[2024-11-02 16:59:41] -rw-r--r-- 1 boincer umatlas       620 Nov  2 16:59 runtime_log
[2024-11-02 16:59:41] -rw------- 1 boincer umatlas   1546240 Nov  2 16:59 result.tar.gz
[2024-11-02 16:59:41] -rw-r--r-- 1 boincer umatlas     11428 Nov  2 16:59 runtime_log.err
[2024-11-02 16:59:41] -rw------- 1 boincer umatlas       655 Nov  2 16:59 2fZNDmn6YR6n7OlckoGmwREmGgkVDo1bjSoqOlfODmCvbLDmmPIUBn.diag
[2024-11-02 16:59:41] -rw-r--r-- 1 boincer umatlas     20986 Nov  2 16:59 stderr.txt
[2024-11-02 16:59:41] HITS file was successfully produced:
[2024-11-02 16:59:41] -rw------- 1 boincer umatlas 43407786 Nov  2 16:59 shared/HITS.pool.root.1
[2024-11-02 16:59:41]  *** Contents of shared directory: ***
[2024-11-02 16:59:41] total 392496
[2024-11-02 16:59:41] -rw-r--r-- 2 boincer umatlas 356427250 Nov  2 16:02 ATLAS.root_0
[2024-11-02 16:59:41] -rw-r--r-- 2 boincer umatlas     17569 Nov  2 16:02 start_atlas.sh
[2024-11-02 16:59:41] -rw-r--r-- 2 boincer umatlas    499912 Nov  2 16:02 input.tar.gz
[2024-11-02 16:59:41] -rw------- 1 boincer umatlas  43407786 Nov  2 16:59 HITS.pool.root.1
[2024-11-02 16:59:41] -rw------- 1 boincer umatlas   1546240 Nov  2 16:59 result.tar.gz
16:59:43 (274088): run_atlas exited; CPU time 8587.643677
16:59:43 (274088): called boinc_finish(0)

</stderr_txt>
]]>

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