Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:10:04 (45106): wrapper (7.7.26015): starting
01:10:04 (45106): wrapper: running run_atlas (--nthreads 8)
[2024-11-02 01:10:04] Arguments: --nthreads 8
[2024-11-02 01:10:04] Threads: 8
[2024-11-02 01:10:04] Checking for CVMFS
[2024-11-02 01:10:04] Probing /cvmfs/atlas.cern.ch... OK
[2024-11-02 01:10:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-11-02 01:10:04] Running cvmfs_config stat atlas.cern.ch
[2024-11-02 01:10:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-11-02 01:10:04] 2.11.2.0 294477 3881 232080 139008 1 190 14993145 18432000 26404 130560 0 36513932 99.390 54408538 37721 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2024-11-02 01:10:04] CVMFS is ok
[2024-11-02 01:10:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-11-02 01:10:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-11-02 01:10:04] Further information can be found at the LHC@home message board.
[2024-11-02 01:10:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-11-02 01:10:04] Checking for apptainer binary...
[2024-11-02 01:10:04] Using apptainer found in PATH at /usr/bin/apptainer
[2024-11-02 01:10:04] Running /usr/bin/apptainer --version
[2024-11-02 01:10:04] apptainer version 1.3.2-1.el7
[2024-11-02 01:10:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-11-02 01:10:05] c-211-35-1.aglt2.org
[2024-11-02 01:10:05] apptainer works
[2024-11-02 01:10:05] Set ATHENA_PROC_NUMBER=8
[2024-11-02 01:10:05] Set ATHENA_CORE_NUMBER=8
[2024-11-02 01:10:05] Starting ATLAS job with PandaID=6387252221
[2024-11-02 01:10:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-11-02 02:58:40]  *** The last 200 lines of the pilot log: ***
[2024-11-02 02:58:40] 2024-11-02 06:58:10,217 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-11-02 02:58:40] 2024-11-02 06:58:12,306 | INFO     | job 6387252221 has state=finished
[2024-11-02 02:58:40] 2024-11-02 06:58:12,306 | INFO     | preparing for final server update for job 6387252221 in state='finished'
[2024-11-02 02:58:40] 2024-11-02 06:58:12,307 | INFO     | this job has now completed (state=finished)
[2024-11-02 02:58:40] 2024-11-02 06:58:12,307 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-11-02 02:58:40] 2024-11-02 06:58:12,307 | INFO     | log transfer has been attempted: DONE
[2024-11-02 02:58:40] 2024-11-02 06:58:12,307 | INFO     | job 6387252221 has finished - writing final server update
[2024-11-02 02:58:40] 2024-11-02 06:58:12,307 | INFO     | total number of processed events: 50 (read)
[2024-11-02 02:58:40] 2024-11-02 06:58:12,336 | INFO     | executing command: lscpu
[2024-11-02 02:58:40] 2024-11-02 06:58:12,397 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-11-02 02:58:40] 2024-11-02 06:58:12,420 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-11-02 02:58:40] 2024-11-02 06:58:21,403 | INFO     | CPU arch script returned: x86-64-v4
[2024-11-02 02:58:40] 2024-11-02 06:58:21,408 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6387252221/memory_monitor_summary.json (trf name=prmon)
[2024-11-02 02:58:40] 2024-11-02 06:58:21,410 | INFO     | extracted standard info from prmon json
[2024-11-02 02:58:40] 2024-11-02 06:58:21,410 | INFO     | extracted standard memory fields from prmon json
[2024-11-02 02:58:40] 2024-11-02 06:58:21,410 | WARNING  | GPU info not found in prmon json: 'gpu'
[2024-11-02 02:58:40] 2024-11-02 06:58:21,413 | INFO     | fitting pss+swap vs Time
[2024-11-02 02:58:40] 2024-11-02 06:58:21,414 | INFO     | model: linear, x: [1730524249.0, 1730524310.0, 1730524371.0, 1730524432.0, 1730524493.0, 1730524554.0, 1730524615.0, 1730524676.0, 1730524737.0, 1730524798.0, 1730
[2024-11-02 02:58:40] 2024-11-02 06:58:21,414 | INFO     | sum of square deviations: 369388018.7264156
[2024-11-02 02:58:40] 2024-11-02 06:58:21,414 | INFO     | sum of deviations: 26092861869.96226
[2024-11-02 02:58:40] 2024-11-02 06:58:21,414 | INFO     | mean x: 1730527452.3113208
[2024-11-02 02:58:40] 2024-11-02 06:58:21,414 | INFO     | mean y: 1678138.6981132075
[2024-11-02 02:58:40] 2024-11-02 06:58:21,414 | INFO     | -- intersect: -122239465282.84927
[2024-11-02 02:58:40] 2024-11-02 06:58:21,414 | INFO     | intersect: -122239465282.84927
[2024-11-02 02:58:40] 2024-11-02 06:58:21,414 | INFO     | chi2: 30.424769126252055
[2024-11-02 02:58:40] 2024-11-02 06:58:21,415 | INFO     | model: linear, x: [1730524249.0, 1730524310.0, 1730524371.0, 1730524432.0, 1730524493.0, 1730524554.0, 1730524615.0, 1730524676.0, 1730524737.0, 1730524798.0, 1730
[2024-11-02 02:58:40] 2024-11-02 06:58:21,415 | INFO     | sum of square deviations: 319580752.77227783
[2024-11-02 02:58:40] 2024-11-02 06:58:21,415 | INFO     | sum of deviations: 43227967105.56437
[2024-11-02 02:58:40] 2024-11-02 06:58:21,415 | INFO     | mean x: 1730527299.8514853
[2024-11-02 02:58:40] 2024-11-02 06:58:21,415 | INFO     | mean y: 1730713.2376237623
[2024-11-02 02:58:40] 2024-11-02 06:58:21,415 | INFO     | -- intersect: -234077376192.69717
[2024-11-02 02:58:40] 2024-11-02 06:58:21,415 | INFO     | intersect: -234077376192.69717
[2024-11-02 02:58:40] 2024-11-02 06:58:21,415 | INFO     | chi2: 24.33183564264217
[2024-11-02 02:58:40] 2024-11-02 06:58:21,415 | INFO     | current chi2=24.33183564264217 (change=20.026227506694834 %)
[2024-11-02 02:58:40] 2024-11-02 06:58:21,416 | INFO     | right removable region: 100
[2024-11-02 02:58:40] 2024-11-02 06:58:21,416 | INFO     | model: linear, x: [1730524554.0, 1730524615.0, 1730524676.0, 1730524737.0, 1730524798.0, 1730524859.0, 1730524920.0, 1730524981.0, 1730525042.0, 1730525103.0, 1730
[2024-11-02 02:58:40] 2024-11-02 06:58:21,416 | INFO     | sum of square deviations: 319528292.77227783
[2024-11-02 02:58:40] 2024-11-02 06:58:21,416 | INFO     | sum of deviations: 6398588924.504944
[2024-11-02 02:58:40] 2024-11-02 06:58:21,416 | INFO     | mean x: 1730527604.8514853
[2024-11-02 02:58:40] 2024-11-02 06:58:21,416 | INFO     | mean y: 1738083.6336633663
[2024-11-02 02:58:40] 2024-11-02 06:58:21,416 | INFO     | -- intersect: -34652266010.59615
[2024-11-02 02:58:40] 2024-11-02 06:58:21,416 | INFO     | intersect: -34652266010.59615
[2024-11-02 02:58:40] 2024-11-02 06:58:21,416 | INFO     | chi2: 27.150471117880098
[2024-11-02 02:58:40] 2024-11-02 06:58:21,416 | INFO     | current chi2=27.150471117880098 (change=10.761948578096932 %)
[2024-11-02 02:58:40] 2024-11-02 06:58:21,416 | INFO     | left removable region: 10
[2024-11-02 02:58:40] 2024-11-02 06:58:21,417 | INFO     | model: linear, x: [1730524859.0, 1730524920.0, 1730524981.0, 1730525042.0, 1730525103.0, 1730525164.0, 1730525225.0, 1730525286.0, 1730525347.0, 1730525408.0, 1730
[2024-11-02 02:58:40] 2024-11-02 06:58:21,417 | INFO     | sum of square deviations: 226108522.32222202
[2024-11-02 02:58:40] 2024-11-02 06:58:21,417 | INFO     | sum of deviations: 12945638969.922209
[2024-11-02 02:58:40] 2024-11-02 06:58:21,417 | INFO     | mean x: 1730527574.4555554
[2024-11-02 02:58:40] 2024-11-02 06:58:21,417 | INFO     | mean y: 1867598.8555555556
[2024-11-02 02:58:40] 2024-11-02 06:58:21,417 | INFO     | -- intersect: -99077923716.88753
[2024-11-02 02:58:40] 2024-11-02 06:58:21,417 | INFO     | intersect: -99077923716.88753
[2024-11-02 02:58:40] 2024-11-02 06:58:21,417 | INFO     | chi2: 18.961440146044264
[2024-11-02 02:58:40] 2024-11-02 06:58:21,417 | INFO     | -- intersect: -99077923716.88753
[2024-11-02 02:58:40] 2024-11-02 06:58:21,417 | INFO     | current memory leak: 57.25 B/s (using 90 data points, chi2=18.96)
[2024-11-02 02:58:40] 2024-11-02 06:58:21,418 | INFO     | ..............................
[2024-11-02 02:58:40] 2024-11-02 06:58:21,418 | INFO     | . Timing measurements:
[2024-11-02 02:58:40] 2024-11-02 06:58:21,418 | INFO     | . get job = 0 s
[2024-11-02 02:58:40] 2024-11-02 06:58:21,418 | INFO     | . initial setup = 2 s
[2024-11-02 02:58:40] 2024-11-02 06:58:21,418 | INFO     | . payload setup = 6 s
[2024-11-02 02:58:40] 2024-11-02 06:58:21,418 | INFO     | . stage-in = 0 s
[2024-11-02 02:58:40] 2024-11-02 06:58:21,418 | INFO     | . payload execution = 6443 s
[2024-11-02 02:58:40] 2024-11-02 06:58:21,418 | INFO     | . stage-out = 0 s
[2024-11-02 02:58:40] 2024-11-02 06:58:21,418 | INFO     | . log creation = 0 s
[2024-11-02 02:58:40] 2024-11-02 06:58:21,418 | INFO     | ..............................
[2024-11-02 02:58:40] 2024-11-02 06:58:21,706 | WARNING  | process 76566 is no longer using CPU - aborting
[2024-11-02 02:58:40] 2024-11-02 06:58:21,707 | INFO     | aborting job monitoring since job object (job id=6387252221) has expired
[2024-11-02 02:58:40] 2024-11-02 06:58:21,752 | INFO     | 
[2024-11-02 02:58:40] 2024-11-02 06:58:21,752 | INFO     | job summary report
[2024-11-02 02:58:40] 2024-11-02 06:58:21,752 | INFO     | --------------------------------------------------
[2024-11-02 02:58:40] 2024-11-02 06:58:21,752 | INFO     | PanDA job id: 6387252221
[2024-11-02 02:58:40] 2024-11-02 06:58:21,752 | INFO     | task id: 41843793
[2024-11-02 02:58:40] 2024-11-02 06:58:21,752 | INFO     | errors: (none)
[2024-11-02 02:58:40] 2024-11-02 06:58:21,752 | INFO     | status: LOG_TRANSFER = DONE 
[2024-11-02 02:58:40] 2024-11-02 06:58:21,752 | INFO     | pilot state: finished 
[2024-11-02 02:58:40] 2024-11-02 06:58:21,752 | INFO     | transexitcode: 0
[2024-11-02 02:58:40] 2024-11-02 06:58:21,753 | INFO     | exeerrorcode: 0
[2024-11-02 02:58:40] 2024-11-02 06:58:21,753 | INFO     | exeerrordiag: 
[2024-11-02 02:58:40] 2024-11-02 06:58:21,753 | INFO     | exitcode: 0
[2024-11-02 02:58:40] 2024-11-02 06:58:21,753 | INFO     | exitmsg: OK
[2024-11-02 02:58:40] 2024-11-02 06:58:21,753 | INFO     | cpuconsumptiontime: 13084 s
[2024-11-02 02:58:40] 2024-11-02 06:58:21,753 | INFO     | nevents: 50
[2024-11-02 02:58:40] 2024-11-02 06:58:21,753 | INFO     | neventsw: 0
[2024-11-02 02:58:40] 2024-11-02 06:58:21,753 | INFO     | pid: 76566
[2024-11-02 02:58:40] 2024-11-02 06:58:21,753 | INFO     | pgrp: 76566
[2024-11-02 02:58:40] 2024-11-02 06:58:21,753 | INFO     | corecount: 8
[2024-11-02 02:58:40] 2024-11-02 06:58:21,753 | INFO     | event service: False
[2024-11-02 02:58:40] 2024-11-02 06:58:21,753 | INFO     | sizes: {0: 2413009, 1: 2413208, 6: 2413414, 12: 2413442, 6453: 2441097, 6454: 2441096, 6455: 2450356, 6466: 2450522}
[2024-11-02 02:58:40] 2024-11-02 06:58:21,753 | INFO     | --------------------------------------------------
[2024-11-02 02:58:40] 2024-11-02 06:58:21,754 | INFO     | 
[2024-11-02 02:58:40] 2024-11-02 06:58:21,754 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2024-11-02 02:58:40] 2024-11-02 06:58:21,784 | INFO     | queue jobs had 0 job(s) [purged]
[2024-11-02 02:58:40] 2024-11-02 06:58:21,784 | INFO     | queue payloads had 0 job(s) [purged]
[2024-11-02 02:58:40] 2024-11-02 06:58:21,784 | INFO     | queue data_in had 0 job(s) [purged]
[2024-11-02 02:58:40] 2024-11-02 06:58:21,784 | INFO     | queue data_out had 0 job(s) [purged]
[2024-11-02 02:58:40] 2024-11-02 06:58:21,784 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-11-02 02:58:40] 2024-11-02 06:58:21,784 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-11-02 02:58:40] 2024-11-02 06:58:21,784 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-11-02 02:58:40] 2024-11-02 06:58:21,784 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-11-02 02:58:40] 2024-11-02 06:58:21,785 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-11-02 02:58:40] 2024-11-02 06:58:21,785 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-11-02 02:58:40] 2024-11-02 06:58:21,785 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-11-02 02:58:40] 2024-11-02 06:58:21,785 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-11-02 02:58:40] 2024-11-02 06:58:21,785 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-11-02 02:58:40] 2024-11-02 06:58:21,785 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-11-02 02:58:40] 2024-11-02 06:58:21,785 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-11-02 02:58:40] 2024-11-02 06:58:21,785 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-11-02 02:58:40] 2024-11-02 06:58:21,785 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-11-02 02:58:40] 2024-11-02 06:58:21,785 | INFO     | queue completed_jobids has 1 job(s)
[2024-11-02 02:58:40] 2024-11-02 06:58:21,785 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-11-02 02:58:40] 2024-11-02 06:58:21,785 | INFO     | queue messages had 0 job(s) [purged]
[2024-11-02 02:58:40] 2024-11-02 06:58:21,786 | INFO     | job 6387252221 has completed (purged errors)
[2024-11-02 02:58:40] 2024-11-02 06:58:21,786 | INFO     | overall cleanup function is called
[2024-11-02 02:58:40] 2024-11-02 06:58:22,800 | INFO     | --- collectZombieJob: --- 10, [76566]
[2024-11-02 02:58:40] 2024-11-02 06:58:22,800 | INFO     | zombie collector waiting for pid 76566
[2024-11-02 02:58:40] 2024-11-02 06:58:22,800 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-11-02 02:58:40] 2024-11-02 06:58:22,800 | INFO     | collected zombie processes
[2024-11-02 02:58:40] 2024-11-02 06:58:22,800 | INFO     | will attempt to kill all subprocesses of pid=76566
[2024-11-02 02:58:40] 2024-11-02 06:58:23,056 | INFO     | process IDs to be killed: [76566] (in reverse order)
[2024-11-02 02:58:40] 2024-11-02 06:58:23,222 | WARNING  | found no corresponding commands to process id(s)
[2024-11-02 02:58:40] 2024-11-02 06:58:23,222 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-11-02 02:58:40] 2024-11-02 06:58:23,237 | INFO     | did not find any defunct processes belonging to 76566
[2024-11-02 02:58:40] 2024-11-02 06:58:23,251 | INFO     | did not find any defunct processes belonging to 76566
[2024-11-02 02:58:40] 2024-11-02 06:58:23,251 | INFO     | ready for new job
[2024-11-02 02:58:40] 2024-11-02 06:58:23,251 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-11-02 02:58:40] 2024-11-02 06:58:23,252 | INFO     | **************************************
[2024-11-02 02:58:40] 2024-11-02 06:58:23,252 | INFO     | ***  PanDA Pilot version 3.9.1.13  ***
[2024-11-02 02:58:40] 2024-11-02 06:58:23,252 | INFO     | **************************************
[2024-11-02 02:58:40] 2024-11-02 06:58:23,252 | INFO     | 
[2024-11-02 02:58:40] 2024-11-02 06:58:23,255 | INFO     | architecture information:
[2024-11-02 02:58:40] 2024-11-02 06:58:23,256 | INFO     | executing command: cat /etc/os-release
[2024-11-02 02:58:40] 2024-11-02 06:58:23,276 | INFO     | cat /etc/os-release:
[2024-11-02 02:58:40] NAME="CentOS Linux"
[2024-11-02 02:58:40] VERSION="7 (Core)"
[2024-11-02 02:58:40] ID="centos"
[2024-11-02 02:58:40] ID_LIKE="rhel fedora"
[2024-11-02 02:58:40] VERSION_ID="7"
[2024-11-02 02:58:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-11-02 02:58:40] ANSI_COLOR="0;31"
[2024-11-02 02:58:40] CPE_NAME="cpe:/o:centos:centos:7"
[2024-11-02 02:58:40] HOME_URL="https://www.centos.org/"
[2024-11-02 02:58:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-11-02 02:58:40] 
[2024-11-02 02:58:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-11-02 02:58:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-11-02 02:58:40] REDHAT_SUPPORT_PRODUCT="centos"
[2024-11-02 02:58:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-11-02 02:58:40] 
[2024-11-02 02:58:40] 2024-11-02 06:58:23,277 | INFO     | **************************************
[2024-11-02 02:58:40] 2024-11-02 06:58:23,778 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2024-11-02 02:58:40] 2024-11-02 06:58:23,804 | INFO     | sufficient remaining disk space (102209945600 B)
[2024-11-02 02:58:40] 2024-11-02 06:58:23,804 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-11-02 02:58:40] 2024-11-02 06:58:23,804 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-11-02 02:58:40] 2024-11-02 06:58:23,804 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-11-02 02:58:40] 2024-11-02 06:58:24,209 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-11-02 02:58:40] 2024-11-02 06:58:24,209 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-11-02 02:58:40] 2024-11-02 06:58:24,209 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-11-02 02:58:40] 2024-11-02 06:58:24,209 | INFO     | will abort loop
[2024-11-02 02:58:40] 2024-11-02 06:58:24,252 | INFO     | all payload control threads have been joined
[2024-11-02 02:58:40] 2024-11-02 06:58:24,469 | INFO     | found 0 job(s) in 20 queues
[2024-11-02 02:58:40] 2024-11-02 06:58:24,469 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-11-02 02:58:40] 2024-11-02 06:58:24,469 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-11-02 02:58:40] 2024-11-02 06:58:24,790 | INFO     | all job control threads have been joined
[2024-11-02 02:58:40] 2024-11-02 06:58:24,810 | INFO     | [job] retrieve thread has finished
[2024-11-02 02:58:40] 2024-11-02 06:58:24,854 | INFO     | all data control threads have been joined
[2024-11-02 02:58:40] 2024-11-02 06:58:24,948 | INFO     | [job] create_data_payload thread has finished
[2024-11-02 02:58:40] 2024-11-02 06:58:24,954 | INFO     | [data] copytool_in thread has finished
[2024-11-02 02:58:40] 2024-11-02 06:58:25,018 | INFO     | [payload] failed_post thread has finished
[2024-11-02 02:58:40] 2024-11-02 06:58:25,169 | INFO     | [payload] execute_payloads thread has finished
[2024-11-02 02:58:40] 2024-11-02 06:58:25,215 | INFO     | [job] job monitor thread has finished
[2024-11-02 02:58:40] 2024-11-02 06:58:25,257 | INFO     | [payload] control thread has finished
[2024-11-02 02:58:40] 2024-11-02 06:58:25,335 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-11-02 02:58:40] 2024-11-02 06:58:25,795 | INFO     | [job] control thread has finished
[2024-11-02 02:58:40] 2024-11-02 06:58:25,811 | INFO     | [data] copytool_out thread has finished
[2024-11-02 02:58:40] 2024-11-02 06:58:25,860 | INFO     | [data] control thread has finished
[2024-11-02 02:58:40] 2024-11-02 06:58:25,940 | INFO     | [payload] validate_pre thread has finished
[2024-11-02 02:58:40] 2024-11-02 06:58:26,256 | INFO     | [payload] validate_post thread has finished
[2024-11-02 02:58:40] 2024-11-02 06:58:26,266 | INFO     | [job] validate thread has finished
[2024-11-02 02:58:40] 2024-11-02 06:58:26,499 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-11-02 02:58:40] 2024-11-02 06:58:27,504 | INFO     | [job] queue monitor thread has finished
[2024-11-02 02:58:40] 2024-11-02 06:58:29,340 | INFO     | [data] queue_monitor thread has finished
[2024-11-02 02:58:40] 2024-11-02 06:58:34,347 | INFO     | job.realtimelogging is not enabled
[2024-11-02 02:58:40] 2024-11-02 06:58:35,352 | INFO     | [payload] run_realtimelog thread has finished
[2024-11-02 02:58:40] 2024-11-02 06:58:35,408 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140533235386176)>', '<ExcThread(monitor, started 140532655314688)>']
[2024-11-02 02:58:40] 2024-11-02 06:58:35,530 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-11-02 02:58:40] 2024-11-02 06:58:35,530 | INFO     | [monitor] control thread has ended
[2024-11-02 02:58:40] 2024-11-02 06:58:40,433 | INFO     | all workflow threads have been joined
[2024-11-02 02:58:40] 2024-11-02 06:58:40,433 | INFO     | end of generic workflow (traces error code: 0)
[2024-11-02 02:58:40] 2024-11-02 06:58:40,433 | INFO     | traces error code: 0
[2024-11-02 02:58:40] 2024-11-02 06:58:40,434 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-11-02 02:58:40] 2024-11-02 06:58:40,569 [wrapper] ==== pilot stdout END ====
[2024-11-02 02:58:40] 2024-11-02 06:58:40,573 [wrapper] ==== wrapper stdout RESUME ====
[2024-11-02 02:58:40] 2024-11-02 06:58:40,577 [wrapper] pilotpid: 54186
[2024-11-02 02:58:40] 2024-11-02 06:58:40,579 [wrapper] Pilot exit status: 0
[2024-11-02 02:58:40] 2024-11-02 06:58:40,588 [wrapper] pandaids: 6387252221
[2024-11-02 02:58:40] 2024-11-02 06:58:40,698 [wrapper] cleanup supervisor_pilot 296825 54187
[2024-11-02 02:58:40] 2024-11-02 06:58:40,701 [wrapper] Test setup, not cleaning
[2024-11-02 02:58:40] 2024-11-02 06:58:40,704 [wrapper] ==== wrapper stdout END ====
[2024-11-02 02:58:40] 2024-11-02 06:58:40,712 [wrapper] ==== wrapper stderr END ====
[2024-11-02 02:58:40] 2024-11-02 06:58:40,726 [wrapper] apfmon messages muted
[2024-11-02 02:58:40]  *** Error codes and diagnostics ***
[2024-11-02 02:58:40]     "exeErrorCode": 0,
[2024-11-02 02:58:40]     "exeErrorDiag": "",
[2024-11-02 02:58:40]     "pilotErrorCode": 0,
[2024-11-02 02:58:40]     "pilotErrorDiag": "",
[2024-11-02 02:58:40]  *** Listing of results directory ***
[2024-11-02 02:58:40] total 409744
[2024-11-02 02:58:40] -rw-r--r-- 1 boincer umatlas    486088 Nov  2 00:41 pilot3.tar.gz
[2024-11-02 02:58:40] -rw-r--r-- 1 boincer umatlas      5652 Nov  2 00:44 queuedata.json
[2024-11-02 02:58:40] -rwx------ 1 boincer umatlas     34589 Nov  2 00:44 runpilot2-wrapper.sh
[2024-11-02 02:58:40] -rw-r--r-- 1 boincer umatlas       100 Nov  2 01:10 wrapper_26015_x86_64-pc-linux-gnu
[2024-11-02 02:58:40] -rwxr-xr-x 1 boincer umatlas      7986 Nov  2 01:10 run_atlas
[2024-11-02 02:58:40] -rw-r--r-- 1 boincer umatlas       105 Nov  2 01:10 job.xml
[2024-11-02 02:58:40] -rw-r--r-- 2 boincer umatlas 367995716 Nov  2 01:10 EVNT.41779818._000019.pool.root.1
[2024-11-02 02:58:40] -rw-r--r-- 2 boincer umatlas     17569 Nov  2 01:10 start_atlas.sh
[2024-11-02 02:58:40] drwxrwx--x 2 boincer umatlas      4096 Nov  2 01:10 shared
[2024-11-02 02:58:40] -rw-r--r-- 2 boincer umatlas    499919 Nov  2 01:10 input.tar.gz
[2024-11-02 02:58:40] -rw-r--r-- 1 boincer umatlas         0 Nov  2 01:10 boinc_lockfile
[2024-11-02 02:58:40] -rw-r--r-- 1 boincer umatlas      2889 Nov  2 01:10 pandaJob.out
[2024-11-02 02:58:40] -rw------- 1 boincer umatlas       467 Nov  2 01:10 setup.sh.local
[2024-11-02 02:58:40] -rw------- 1 boincer umatlas   1029668 Nov  2 01:10 agis_schedconf.cvmfs.json
[2024-11-02 02:58:40] -rw------- 1 boincer umatlas   1602446 Nov  2 01:10 agis_ddmendpoints.agis.ALL.json
[2024-11-02 02:58:40] drwx------ 4 boincer umatlas      4096 Nov  2 01:10 pilot3
[2024-11-02 02:58:40] -rw-r--r-- 1 boincer umatlas       530 Nov  2 02:33 boinc_task_state.xml
[2024-11-02 02:58:40] -rw-r--r-- 1 boincer umatlas      6385 Nov  2 02:55 init_data.xml
[2024-11-02 02:58:40] -rw------- 1 boincer umatlas        95 Nov  2 02:57 pilot_heartbeat.json
[2024-11-02 02:58:40] -rw------- 1 boincer umatlas  44092109 Nov  2 02:57 HITS.41843793._004046.pool.root.1
[2024-11-02 02:58:40] -rw------- 1 boincer umatlas      1059 Nov  2 02:58 memory_monitor_summary.json
[2024-11-02 02:58:40] -rw------- 1 boincer umatlas   1224875 Nov  2 02:58 log.41843793._004046.job.log.tgz.1
[2024-11-02 02:58:40] -rw------- 1 boincer umatlas      8576 Nov  2 02:58 heartbeat.json
[2024-11-02 02:58:40] -rw-r--r-- 1 boincer umatlas      8192 Nov  2 02:58 boinc_mmap_file
[2024-11-02 02:58:40] -rw-r--r-- 1 boincer umatlas        27 Nov  2 02:58 wrapper_checkpoint.txt
[2024-11-02 02:58:40] -rw------- 1 boincer umatlas      4474 Nov  2 02:58 pilotlog.txt
[2024-11-02 02:58:40] -rw------- 1 boincer umatlas    584558 Nov  2 02:58 log.41843793._004046.job.log.1
[2024-11-02 02:58:40] -rw------- 1 boincer umatlas       353 Nov  2 02:58 output.list
[2024-11-02 02:58:40] -rw-r--r-- 1 boincer umatlas       620 Nov  2 02:58 runtime_log
[2024-11-02 02:58:40] -rw------- 1 boincer umatlas   1832960 Nov  2 02:58 result.tar.gz
[2024-11-02 02:58:40] -rw-r--r-- 1 boincer umatlas     11428 Nov  2 02:58 runtime_log.err
[2024-11-02 02:58:40] -rw------- 1 boincer umatlas       659 Nov  2 02:58 0RILDmmALR6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDm2WiMDmTHoI9m.diag
[2024-11-02 02:58:40] -rw-r--r-- 1 boincer umatlas     21763 Nov  2 02:58 stderr.txt
[2024-11-02 02:58:40] HITS file was successfully produced:
[2024-11-02 02:58:40] -rw------- 1 boincer umatlas 44092109 Nov  2 02:57 shared/HITS.pool.root.1
[2024-11-02 02:58:40]  *** Contents of shared directory: ***
[2024-11-02 02:58:40] total 404740
[2024-11-02 02:58:40] -rw-r--r-- 2 boincer umatlas 367995716 Nov  2 01:10 ATLAS.root_0
[2024-11-02 02:58:40] -rw-r--r-- 2 boincer umatlas     17569 Nov  2 01:10 start_atlas.sh
[2024-11-02 02:58:40] -rw-r--r-- 2 boincer umatlas    499919 Nov  2 01:10 input.tar.gz
[2024-11-02 02:58:40] -rw------- 1 boincer umatlas  44092109 Nov  2 02:57 HITS.pool.root.1
[2024-11-02 02:58:40] -rw------- 1 boincer umatlas   1832960 Nov  2 02:58 result.tar.gz
02:58:42 (45106): run_atlas exited; CPU time 12911.505373
02:58:42 (45106): called boinc_finish(0)

</stderr_txt>
]]>

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