Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:04:22 (3974393): wrapper (7.7.26015): starting
00:04:22 (3974393): wrapper: running run_atlas (--nthreads 8)
[2024-11-01 00:04:22] Arguments: --nthreads 8
[2024-11-01 00:04:22] Threads: 8
[2024-11-01 00:04:22] Checking for CVMFS
[2024-11-01 00:04:22] Probing /cvmfs/atlas.cern.ch... OK
[2024-11-01 00:04:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-11-01 00:04:22] Running cvmfs_config stat atlas.cern.ch
[2024-11-01 00:04:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-11-01 00:04:22] 2.11.5.0 678199 4271 91668 138959 3 86 3642745 4097025 0 130560 0 122617988 100.000 913114 72086 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://137.138.123.72:3128 1
[2024-11-01 00:04:22] CVMFS is ok
[2024-11-01 00:04:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-11-01 00:04:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-11-01 00:04:22] Further information can be found at the LHC@home message board.
[2024-11-01 00:04:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-11-01 00:04:22] Checking for apptainer binary...
[2024-11-01 00:04:22] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2024-11-01 00:04:22] apptainer is not installed, using version from CVMFS
[2024-11-01 00:04:22] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-11-01 00:04:22] pckeatlas02
[2024-11-01 00:04:22] apptainer works
[2024-11-01 00:04:22] Set ATHENA_PROC_NUMBER=8
[2024-11-01 00:04:22] Set ATHENA_CORE_NUMBER=8
[2024-11-01 00:04:22] Starting ATLAS job with PandaID=6385647743
[2024-11-01 00:04:22] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-11-01 00:06:00]  *** The last 200 lines of the pilot log: ***
[2024-11-01 00:06:00] 2024-10-31 23:05:46,307 | INFO     | extracted standard memory fields from prmon json
[2024-11-01 00:06:00] 2024-10-31 23:05:46,307 | WARNING  | GPU info not found in prmon json: 'gpu'
[2024-11-01 00:06:00] 2024-10-31 23:05:46,307 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-11-01 00:06:00] 2024-10-31 23:05:46,307 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-11-01 00:06:00] 2024-10-31 23:05:46,307 | WARNING  | found no stored workdir sizes
[2024-11-01 00:06:00] 2024-10-31 23:05:46,307 | INFO     | will not add max space = 0 B to job metrics
[2024-11-01 00:06:00] 2024-10-31 23:05:46,307 | WARNING  | wrong length of table data, x=[1730415884.0], y=[1225.0] (must be same and length>=4)
[2024-11-01 00:06:00] 2024-10-31 23:05:46,308 | INFO     | ..............................
[2024-11-01 00:06:00] 2024-10-31 23:05:46,308 | INFO     | . Timing measurements:
[2024-11-01 00:06:00] 2024-10-31 23:05:46,308 | INFO     | . get job = 0 s
[2024-11-01 00:06:00] 2024-10-31 23:05:46,308 | INFO     | . initial setup = 0 s
[2024-11-01 00:06:00] 2024-10-31 23:05:46,308 | INFO     | . payload setup = 2 s
[2024-11-01 00:06:00] 2024-10-31 23:05:46,308 | INFO     | . stage-in = 0 s
[2024-11-01 00:06:00] 2024-10-31 23:05:46,308 | INFO     | . payload execution = 54 s
[2024-11-01 00:06:00] 2024-10-31 23:05:46,308 | INFO     | . stage-out = 4 s
[2024-11-01 00:06:00] 2024-10-31 23:05:46,308 | INFO     | . log creation = 0 s
[2024-11-01 00:06:00] 2024-10-31 23:05:46,308 | INFO     | ..............................
[2024-11-01 00:06:00] 2024-10-31 23:05:46,308 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2024-11-01 00:06:00] 2024-10-31 23:05:46,308 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/19/PanDA_Pilot-6385647743/pilotlog.txt
[2024-11-01 00:06:00] 2024-10-31 23:05:46,315 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2024-11-01 00:06:00] - Log from pilotlog.txt -
[2024-11-01 00:06:00] 2024-10-31 23:05:46,307 | INFO     | extracted standard info from prmon json
[2024-11-01 00:06:00] 2024-10-31 23:05:46,307 | INFO     | extracted standard memory fields from prmon json
[2024-11-01 00:06:00] 2024-10-31 23:05:46,307 | WARNING  | GPU info not found in prmon json: 'gpu'
[2024-11-01 00:06:00] 2024-10-31 23:05:46,307 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-11-01 00:06:00] 2024-10-31 23:05:46,307 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-11-01 00:06:00] 2024-10-31 23:05:46,307 | WARNING  | found no stored workdir sizes
[2024-11-01 00:06:00] 2024-10-31 23:05:46,307 | INFO     | will not add max space = 0 B to job metrics
[2024-11-01 00:06:00] 2024-10-31 23:05:46,307 | WARNING  | wrong length of table data, x=[1730415884.0], y=[1225.0] (must be same and length>=4)
[2024-11-01 00:06:00] 2024-10-31 23:05:46,308 | INFO     | ..............................
[2024-11-01 00:06:00] 2024-10-31 23:05:46,308 | INFO     | . Timing measurements:
[2024-11-01 00:06:00] 2024-10-31 23:05:46,308 | INFO     | . get job = 0 s
[2024-11-01 00:06:00] 2024-10-31 23:05:46,308 | INFO     | . initial setup = 0 s
[2024-11-01 00:06:00] 2024-10-31 23:05:46,308 | INFO     | . payload setup = 2 s
[2024-11-01 00:06:00] 2024-10-31 23:05:46,308 | INFO     | . stage-in = 0 s
[2024-11-01 00:06:00] 2024-10-31 23:05:46,308 | INFO     | . payload execution = 54 s
[2024-11-01 00:06:00] 2024-10-31 23:05:46,308 | INFO     | . stage-out = 4 s
[2024-11-01 00:06:00] 2024-10-31 23:05:46,308 | INFO     | . log creation = 0 s
[2024-11-01 00:06:00] 2024-10-31 23:05:46,308 | INFO     | ..............................
[2024-11-01 00:06:00] 2024-10-31 23:05:46,308 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2024-11-01 00:06:00] 2024-10-31 23:05:46,308 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/19/PanDA_Pilot-6385647743/pilotlog.txt
[2024-11-01 00:06:00] 2024-10-31 23:05:46,315 | WARNING  | 
[2024-11-01 00:06:00] [begin log extracts]
[2024-11-01 00:06:00] - Log from pilotlog.txt -
[2024-11-01 00:06:00] 2024-10-31 23:05:46,307 | INFO     | extracted standard info from prmon json
[2024-11-01 00:06:00] 2024-10-31 23:05:46,307 | INFO     | extracted standard memory fields from prmon json
[2024-11-01 00:06:00] 2024-10-31 23:05:46,307 | WARNING  | GPU info not found in prmon json: 'gpu'
[2024-11-01 00:06:00] 2024-10-31 23:05:46,307 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-11-01 00:06:00] 2024-10-31 23:05:46,307 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-11-01 00:06:00] 2024-10-31 23:05:46,307 | WARNING  | found no stored workdir sizes
[2024-11-01 00:06:00] 2024-10-31 23:05:46,307 | INFO     | will not add max space = 0 B to job metrics
[2024-11-01 00:06:00] 2024-10-31 23:05:46,307 | WARNING  | wrong length of table data, x=[1730415884.0], y=[1225.0] (must be same and length>=4)
[2024-11-01 00:06:00] 2024-10-31 23:05:46,308 | INFO     | ..............................
[2024-11-01 00:06:00] 2024-10-31 23:05:46,308 | INFO     | . Timing measurements:
[2024-11-01 00:06:00] 2024-10-31 23:05:46,308 | INFO     | . get job = 0 s
[2024-11-01 00:06:00] 2024-10-31 23:05:46,308 | INFO     | . initial setup = 0 s
[2024-11-01 00:06:00] 2024-10-31 23:05:46,308 | INFO     | . payload setup = 2 s
[2024-11-01 00:06:00] 2024-10-31 23:05:46,308 | INFO     | . stage-in = 0 s
[2024-11-01 00:06:00] 2024-10-31 23:05:46,308 | INFO     | . payload execution = 54 s
[2024-11-01 00:06:00] 2024-10-31 23:05:46,308 | INFO     | . stage-out = 4 s
[2024-11-01 00:06:00] 2024-10-31 23:05:46,308 | INFO     | . log creation = 0 s
[2024-11-01 00:06:00] 2024-10-31 23:05:46,308 | INFO     | ..............................
[2024-11-01 00:06:00] 2024-10-31 23:05:46,308 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2024-11-01 00:06:00] 2024-10-31 23:05:46,308 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/19/PanDA_Pilot-6385647743/pilotlog.txt
[2024-11-01 00:06:00] [end log extracts]
[2024-11-01 00:06:00] 2024-10-31 23:05:46,315 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2024-11-01 00:06:00] 2024-10-31 23:05:46,315 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute 2024-11-01 00:05:33,349 CRITICAL Transform executor raised TransformValidationExcep
[2024-11-01 00:06:00] 2024-10-31 23:05:46,352 | INFO     | 
[2024-11-01 00:06:00] 2024-10-31 23:05:46,352 | INFO     | job summary report
[2024-11-01 00:06:00] 2024-10-31 23:05:46,352 | INFO     | --------------------------------------------------
[2024-11-01 00:06:00] 2024-10-31 23:05:46,352 | INFO     | PanDA job id: 6385647743
[2024-11-01 00:06:00] 2024-10-31 23:05:46,352 | INFO     | task id: 41843948
[2024-11-01 00:06:00] 2024-10-31 23:05:46,352 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2024-11-01 00:05:33,349 CRITICAL Transform executor raised TransformValidationExceptio
[2024-11-01 00:06:00] 2024-10-31 23:05:46,352 | INFO     | error 2/2: 1165: Local output file is missing
[2024-11-01 00:06:00] 2024-10-31 23:05:46,352 | INFO     | status: LOG_TRANSFER = DONE 
[2024-11-01 00:06:00] 2024-10-31 23:05:46,352 | INFO     | pilot state: failed 
[2024-11-01 00:06:00] 2024-10-31 23:05:46,353 | INFO     | transexitcode: 65
[2024-11-01 00:06:00] 2024-10-31 23:05:46,353 | INFO     | exeerrorcode: 65
[2024-11-01 00:06:00] 2024-10-31 23:05:46,353 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: "IOError: [Errno 2] No such file or directory: 'PDGTABLE.MeV'"
[2024-11-01 00:06:00] 2024-10-31 23:05:46,353 | INFO     | exitcode: 65
[2024-11-01 00:06:00] 2024-10-31 23:05:46,353 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: "IOError: [Errno 2] No such file or directory: 'PDGTABLE.MeV'"
[2024-11-01 00:06:00] 2024-10-31 23:05:46,353 | INFO     | cpuconsumptiontime: 19 s
[2024-11-01 00:06:00] 2024-10-31 23:05:46,353 | INFO     | nevents: 0
[2024-11-01 00:06:00] 2024-10-31 23:05:46,353 | INFO     | neventsw: 0
[2024-11-01 00:06:00] 2024-10-31 23:05:46,353 | INFO     | pid: 3985163
[2024-11-01 00:06:00] 2024-10-31 23:05:46,353 | INFO     | pgrp: 3985163
[2024-11-01 00:06:00] 2024-10-31 23:05:46,353 | INFO     | corecount: 8
[2024-11-01 00:06:00] 2024-10-31 23:05:46,353 | INFO     | event service: False
[2024-11-01 00:06:00] 2024-10-31 23:05:46,353 | INFO     | sizes: {0: 2413230, 2: 2413436, 11: 2413464, 61: 2435850, 62: 2440142, 64: 2440142, 66: 2440298, 68: 2440468}
[2024-11-01 00:06:00] 2024-10-31 23:05:46,353 | INFO     | --------------------------------------------------
[2024-11-01 00:06:00] 2024-10-31 23:05:46,353 | INFO     | 
[2024-11-01 00:06:00] 2024-10-31 23:05:46,353 | INFO     | executing command: ls -lF /var/lib/boinc/slots/19
[2024-11-01 00:06:00] 2024-10-31 23:05:46,362 | INFO     | queue jobs had 0 job(s) [purged]
[2024-11-01 00:06:00] 2024-10-31 23:05:46,362 | INFO     | queue payloads had 0 job(s) [purged]
[2024-11-01 00:06:00] 2024-10-31 23:05:46,362 | INFO     | queue data_in had 0 job(s) [purged]
[2024-11-01 00:06:00] 2024-10-31 23:05:46,362 | INFO     | queue data_out had 0 job(s) [purged]
[2024-11-01 00:06:00] 2024-10-31 23:05:46,362 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-11-01 00:06:00] 2024-10-31 23:05:46,362 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-11-01 00:06:00] 2024-10-31 23:05:46,362 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-11-01 00:06:00] 2024-10-31 23:05:46,362 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-11-01 00:06:00] 2024-10-31 23:05:46,362 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-11-01 00:06:00] 2024-10-31 23:05:46,362 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-11-01 00:06:00] 2024-10-31 23:05:46,362 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-11-01 00:06:00] 2024-10-31 23:05:46,362 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-11-01 00:06:00] 2024-10-31 23:05:46,362 | INFO     | queue failed_jobs had 1 job(s) [purged]
[2024-11-01 00:06:00] 2024-10-31 23:05:46,362 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-11-01 00:06:00] 2024-10-31 23:05:46,362 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-11-01 00:06:00] 2024-10-31 23:05:46,362 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-11-01 00:06:00] 2024-10-31 23:05:46,362 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-11-01 00:06:00] 2024-10-31 23:05:46,363 | INFO     | queue completed_jobids has 1 job(s)
[2024-11-01 00:06:00] 2024-10-31 23:05:46,363 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-11-01 00:06:00] 2024-10-31 23:05:46,363 | INFO     | queue messages had 0 job(s) [purged]
[2024-11-01 00:06:00] 2024-10-31 23:05:46,363 | INFO     | job 6385647743 has completed (purged errors)
[2024-11-01 00:06:00] 2024-10-31 23:05:46,363 | INFO     | overall cleanup function is called
[2024-11-01 00:06:00] 2024-10-31 23:05:47,369 | INFO     | --- collectZombieJob: --- 10, [3985163]
[2024-11-01 00:06:00] 2024-10-31 23:05:47,369 | INFO     | zombie collector waiting for pid 3985163
[2024-11-01 00:06:00] 2024-10-31 23:05:47,369 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-11-01 00:06:00] 2024-10-31 23:05:47,369 | INFO     | collected zombie processes
[2024-11-01 00:06:00] 2024-10-31 23:05:47,369 | INFO     | will attempt to kill all subprocesses of pid=3985163
[2024-11-01 00:06:00] 2024-10-31 23:05:47,388 | INFO     | process IDs to be killed: [3985163] (in reverse order)
[2024-11-01 00:06:00] 2024-10-31 23:05:47,404 | WARNING  | found no corresponding commands to process id(s)
[2024-11-01 00:06:00] 2024-10-31 23:05:47,404 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-11-01 00:06:00] 2024-10-31 23:05:47,405 | INFO     | did not find any defunct processes belonging to 3985163
[2024-11-01 00:06:00] 2024-10-31 23:05:47,406 | INFO     | did not find any defunct processes belonging to 3985163
[2024-11-01 00:06:00] 2024-10-31 23:05:47,406 | INFO     | ready for new job
[2024-11-01 00:06:00] 2024-10-31 23:05:47,406 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-11-01 00:06:00] 2024-10-31 23:05:47,407 | INFO     | **************************************
[2024-11-01 00:06:00] 2024-10-31 23:05:47,407 | INFO     | ***  PanDA Pilot version 3.9.1.13  ***
[2024-11-01 00:06:00] 2024-10-31 23:05:47,407 | INFO     | **************************************
[2024-11-01 00:06:00] 2024-10-31 23:05:47,407 | INFO     | 
[2024-11-01 00:06:00] 2024-10-31 23:05:47,419 | INFO     | architecture information:
[2024-11-01 00:06:00] 2024-10-31 23:05:47,419 | INFO     | executing command: cat /etc/os-release
[2024-11-01 00:06:00] 2024-10-31 23:05:47,426 | INFO     | cat /etc/os-release:
[2024-11-01 00:06:00] NAME="CentOS Linux"
[2024-11-01 00:06:00] VERSION="7 (Core)"
[2024-11-01 00:06:00] ID="centos"
[2024-11-01 00:06:00] ID_LIKE="rhel fedora"
[2024-11-01 00:06:00] VERSION_ID="7"
[2024-11-01 00:06:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-11-01 00:06:00] ANSI_COLOR="0;31"
[2024-11-01 00:06:00] CPE_NAME="cpe:/o:centos:centos:7"
[2024-11-01 00:06:00] HOME_URL="https://www.centos.org/"
[2024-11-01 00:06:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-11-01 00:06:00] 
[2024-11-01 00:06:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-11-01 00:06:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-11-01 00:06:00] REDHAT_SUPPORT_PRODUCT="centos"
[2024-11-01 00:06:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-11-01 00:06:00] 
[2024-11-01 00:06:00] 2024-10-31 23:05:47,426 | INFO     | **************************************
[2024-11-01 00:06:00] 2024-10-31 23:05:47,929 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2024-11-01 00:06:00] 2024-10-31 23:05:47,937 | INFO     | sufficient remaining disk space (152886575104 B)
[2024-11-01 00:06:00] 2024-10-31 23:05:47,937 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-11-01 00:06:00] 2024-10-31 23:05:47,937 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-11-01 00:06:00] 2024-10-31 23:05:47,937 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-11-01 00:06:00] 2024-10-31 23:05:47,938 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-11-01 00:06:00] 2024-10-31 23:05:48,030 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-11-01 00:06:00] 2024-10-31 23:05:48,030 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-11-01 00:06:00] 2024-10-31 23:05:48,030 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-11-01 00:06:00] 2024-10-31 23:05:48,030 | INFO     | will abort loop
[2024-11-01 00:06:00] 2024-10-31 23:05:48,724 | INFO     | all data control threads have been joined
[2024-11-01 00:06:00] 2024-10-31 23:05:48,754 | INFO     | all payload control threads have been joined
[2024-11-01 00:06:00] 2024-10-31 23:05:48,830 | INFO     | found 0 job(s) in 20 queues
[2024-11-01 00:06:00] 2024-10-31 23:05:48,830 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-11-01 00:06:00] 2024-10-31 23:05:48,830 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-11-01 00:06:00] 2024-10-31 23:05:48,943 | INFO     | [job] retrieve thread has finished
[2024-11-01 00:06:00] 2024-10-31 23:05:48,943 | INFO     | [job] queue monitor thread has finished
[2024-11-01 00:06:00] 2024-10-31 23:05:49,035 | INFO     | [job] job monitor thread has finished
[2024-11-01 00:06:00] 2024-10-31 23:05:49,040 | INFO     | [payload] run_realtimelog thread has finished
[2024-11-01 00:06:00] 2024-10-31 23:05:49,187 | INFO     | [payload] failed_post thread has finished
[2024-11-01 00:06:00] 2024-10-31 23:05:49,579 | INFO     | all job control threads have been joined
[2024-11-01 00:06:00] 2024-10-31 23:05:49,730 | INFO     | [data] control thread has finished
[2024-11-01 00:06:00] 2024-10-31 23:05:49,760 | INFO     | [payload] control thread has finished
[2024-11-01 00:06:00] 2024-10-31 23:05:49,886 | INFO     | [payload] execute_payloads thread has finished
[2024-11-01 00:06:00] 2024-10-31 23:05:49,943 | INFO     | [data] copytool_out thread has finished
[2024-11-01 00:06:00] 2024-10-31 23:05:50,016 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-11-01 00:06:00] 2024-10-31 23:05:50,170 | INFO     | [job] validate thread has finished
[2024-11-01 00:06:00] 2024-10-31 23:05:50,254 | INFO     | [payload] validate_post thread has finished
[2024-11-01 00:06:00] 2024-10-31 23:05:50,299 | INFO     | [job] create_data_payload thread has finished
[2024-11-01 00:06:00] 2024-10-31 23:05:50,334 | INFO     | [data] copytool_in thread has finished
[2024-11-01 00:06:00] 2024-10-31 23:05:50,340 | INFO     | [payload] validate_pre thread has finished
[2024-11-01 00:06:00] 2024-10-31 23:05:50,584 | INFO     | [job] control thread has finished
[2024-11-01 00:06:00] 2024-10-31 23:05:54,022 | INFO     | [data] queue_monitor thread has finished
[2024-11-01 00:06:00] 2024-10-31 23:05:55,664 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140591738840896)>', '<ExcThread(monitor, started 140590905808640)>']
[2024-11-01 00:06:00] 2024-10-31 23:05:55,866 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-11-01 00:06:00] 2024-10-31 23:05:55,866 | INFO     | [monitor] control thread has ended
[2024-11-01 00:06:00] 2024-10-31 23:06:00,690 | INFO     | all workflow threads have been joined
[2024-11-01 00:06:00] 2024-10-31 23:06:00,690 | INFO     | end of generic workflow (traces error code: 0)
[2024-11-01 00:06:00] 2024-10-31 23:06:00,690 | INFO     | traces error code: 0
[2024-11-01 00:06:00] 2024-10-31 23:06:00,690 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-11-01 00:06:00] 2024-10-31 23:06:00,740 [wrapper] ==== pilot stdout END ====
[2024-11-01 00:06:00] 2024-10-31 23:06:00,744 [wrapper] ==== wrapper stdout RESUME ====
[2024-11-01 00:06:00] 2024-10-31 23:06:00,745 [wrapper] pilotpid: 3978076
[2024-11-01 00:06:00] 2024-10-31 23:06:00,746 [wrapper] Pilot exit status: 0
[2024-11-01 00:06:00] 2024-10-31 23:06:00,750 [wrapper] pandaids: 6385647743
[2024-11-01 00:06:00] 2024-10-31 23:06:00,759 [wrapper] cleanup supervisor_pilot 3978082 3978077
[2024-11-01 00:06:00] 2024-10-31 23:06:00,760 [wrapper] Test setup, not cleaning
[2024-11-01 00:06:00] 2024-10-31 23:06:00,761 [wrapper] ==== wrapper stdout END ====
[2024-11-01 00:06:00] 2024-10-31 23:06:00,762 [wrapper] ==== wrapper stderr END ====
[2024-11-01 00:06:00] 2024-10-31 23:06:00,764 [wrapper] apfmon messages muted
[2024-11-01 00:06:00]  *** Error codes and diagnostics ***
[2024-11-01 00:06:00]     "exeErrorCode": 65,
[2024-11-01 00:06:00]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"IOError: [Errno 2] No such file or directory: 'PDGTABLE.MeV'\"",
[2024-11-01 00:06:00]     "pilotErrorCode": 1305,
[2024-11-01 00:06:00]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute 2024-11-01 00:05:33,349 CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"IOError: [Errno 2] No such file or directory: 'PDGTABLE.MeV'\"",
[2024-11-01 00:06:00]  *** Listing of results directory ***
[2024-11-01 00:06:00] total 372768
[2024-11-01 00:06:00] -rw-r--r--. 1 boinc boinc    486088 Oct 31 23:16 pilot3.tar.gz
[2024-11-01 00:06:00] -rw-r--r--. 1 boinc boinc      5652 Oct 31 23:24 queuedata.json
[2024-11-01 00:06:00] -rwx------. 1 boinc boinc     34589 Oct 31 23:26 runpilot2-wrapper.sh
[2024-11-01 00:06:00] -rw-r--r--. 1 boinc boinc       100 Nov  1 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2024-11-01 00:06:00] -rwxr-xr-x. 1 boinc boinc      7986 Nov  1 00:04 run_atlas
[2024-11-01 00:06:00] -rw-r--r--. 1 boinc boinc       105 Nov  1 00:04 job.xml
[2024-11-01 00:06:00] -rw-r--r--. 2 boinc boinc     17569 Nov  1 00:04 start_atlas.sh
[2024-11-01 00:06:00] drwxrwx--x. 2 boinc boinc        68 Nov  1 00:04 shared
[2024-11-01 00:06:00] -rw-r--r--. 2 boinc boinc    499918 Nov  1 00:04 input.tar.gz
[2024-11-01 00:06:00] -rw-r--r--. 1 boinc boinc      6284 Nov  1 00:04 init_data.xml
[2024-11-01 00:06:00] -rw-r--r--. 2 boinc boinc 377661910 Nov  1 00:04 EVNT.41779523._000009.pool.root.1
[2024-11-01 00:06:00] -rw-r--r--. 1 boinc boinc         0 Nov  1 00:04 boinc_lockfile
[2024-11-01 00:06:00] -rw-r--r--. 1 boinc boinc      2889 Nov  1 00:04 pandaJob.out
[2024-11-01 00:06:00] -rw-------. 1 boinc boinc       424 Nov  1 00:04 setup.sh.local
[2024-11-01 00:06:00] -rw-------. 1 boinc boinc   1030011 Nov  1 00:04 agis_schedconf.cvmfs.json
[2024-11-01 00:06:00] -rw-------. 1 boinc boinc   1602446 Nov  1 00:04 agis_ddmendpoints.agis.ALL.json
[2024-11-01 00:06:00] drwx------. 4 boinc boinc      4096 Nov  1 00:04 pilot3
[2024-11-01 00:06:00] -rw-r--r--. 1 boinc boinc       522 Nov  1 00:05 boinc_task_state.xml
[2024-11-01 00:06:00] -rw-------. 1 boinc boinc        95 Nov  1 00:05 pilot_heartbeat.json
[2024-11-01 00:06:00] -rw-------. 1 boinc boinc       947 Nov  1 00:05 memory_monitor_summary.json
[2024-11-01 00:06:00] -rw-------. 1 boinc boinc     29767 Nov  1 00:05 log.41843948._001253.job.log.tgz.1
[2024-11-01 00:06:00] -rw-r--r--. 1 boinc boinc      8192 Nov  1 00:05 boinc_mmap_file
[2024-11-01 00:06:00] -rw-r--r--. 1 boinc boinc        21 Nov  1 00:05 wrapper_checkpoint.txt
[2024-11-01 00:06:00] -rw-------. 1 boinc boinc      8511 Nov  1 00:05 heartbeat.json
[2024-11-01 00:06:00] -rw-------. 1 boinc boinc      4403 Nov  1 00:06 pilotlog.txt
[2024-11-01 00:06:00] -rw-------. 1 boinc boinc     69618 Nov  1 00:06 log.41843948._001253.job.log.1
[2024-11-01 00:06:00] -rw-------. 1 boinc boinc       186 Nov  1 00:06 output.list
[2024-11-01 00:06:00] -rw-r--r--. 1 boinc boinc       620 Nov  1 00:06 runtime_log
[2024-11-01 00:06:00] -rw-------. 1 boinc boinc    122880 Nov  1 00:06 result.tar.gz
[2024-11-01 00:06:00] -rw-r--r--. 1 boinc boinc     10890 Nov  1 00:06 runtime_log.err
[2024-11-01 00:06:00] -rw-------. 1 boinc boinc       635 Nov  1 00:06 eh5LDmynsQ6n9Rq4apOajLDm4fhM0noT9bVorHsSDmgFaLDmr9aYim.diag
[2024-11-01 00:06:00] -rw-r--r--. 1 boinc boinc     22030 Nov  1 00:06 stderr.txt
[2024-11-01 00:06:00] No HITS result produced
[2024-11-01 00:06:00]  *** Contents of shared directory: ***
[2024-11-01 00:06:00] total 369444
[2024-11-01 00:06:00] -rw-r--r--. 2 boinc boinc     17569 Nov  1 00:04 start_atlas.sh
[2024-11-01 00:06:00] -rw-r--r--. 2 boinc boinc    499918 Nov  1 00:04 input.tar.gz
[2024-11-01 00:06:00] -rw-r--r--. 2 boinc boinc 377661910 Nov  1 00:04 ATLAS.root_0
[2024-11-01 00:06:00] -rw-------. 1 boinc boinc    122880 Nov  1 00:06 result.tar.gz
00:06:02 (3974393): run_atlas exited; CPU time 20.112235
00:06:02 (3974393): called boinc_finish(0)

</stderr_txt>
]]>

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