Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2024-10-31 21:09:59 (152204): Detected: vboxwrapper 26206
2024-10-31 21:09:59 (152204): Detected: BOINC client v8.0.4
2024-10-31 21:09:59 (152204): Detected: VirtualBox VboxManage Interface (Version: 7.0.20)
2024-10-31 21:09:59 (152204): Successfully copied 'init_data.xml' to the shared directory.
2024-10-31 21:10:00 (152204): Create VM. (boinc_49eadffeacec5545, slot#35)
2024-10-31 21:10:00 (152204): Setting Memory Size for VM. (4096MB)
2024-10-31 21:10:00 (152204): Setting CPU Count for VM. (1)
2024-10-31 21:10:00 (152204): Setting Chipset Options for VM.
2024-10-31 21:10:00 (152204): Setting Graphics Controller Options for VM.
2024-10-31 21:10:01 (152204): Setting Boot Options for VM.
2024-10-31 21:10:01 (152204): Setting Network Configuration for NAT.
2024-10-31 21:10:01 (152204): Enabling VM Network Access.
2024-10-31 21:10:01 (152204): Disabling USB Support for VM.
2024-10-31 21:10:01 (152204): Disabling COM Port Support for VM.
2024-10-31 21:10:01 (152204): Disabling LPT Port Support for VM.
2024-10-31 21:10:01 (152204): Disabling Audio Support for VM.
2024-10-31 21:10:02 (152204): Disabling Clipboard Support for VM.
2024-10-31 21:10:02 (152204): Disabling Drag and Drop Support for VM.
2024-10-31 21:10:02 (152204): Adding storage controller(s) to VM.
2024-10-31 21:10:02 (152204): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-10-31 21:10:02 (152204): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-10-31 21:10:02 (152204): forwarding host port 46923 to guest port 80
2024-10-31 21:10:03 (152204): Enabling remote desktop for VM.
2024-10-31 21:10:03 (152204): Enabling shared directory for VM.
2024-10-31 21:10:03 (152204): Starting VM using VBoxManage interface. (boinc_49eadffeacec5545, slot#35)
2024-10-31 21:10:04 (152204): Successfully started VM. (PID = '152621')
2024-10-31 21:10:04 (152204): Reporting VM Process ID to BOINC.
2024-10-31 21:10:04 (152204): Guest Log: BIOS: VirtualBox 7.0.20
2024-10-31 21:10:04 (152204): Guest Log: CPUID EDX: 0x178bfbff
2024-10-31 21:10:04 (152204): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-10-31 21:10:04 (152204): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-10-31 21:10:04 (152204): VM state change detected. (old = 'poweredoff', new = 'running')
2024-10-31 21:10:04 (152204): Detected: Web Application Enabled (http://localhost:46923)
2024-10-31 21:10:04 (152204): Detected: Remote Desktop Enabled (localhost:47729)
2024-10-31 21:10:04 (152204): Preference change detected
2024-10-31 21:10:04 (152204): Setting CPU throttle for VM. (100%)
2024-10-31 21:10:05 (152204): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-10-31 21:10:06 (152204): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-10-31 21:10:06 (152204): Guest Log: BIOS: Booting from Hard Disk...
2024-10-31 21:10:09 (152204): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-10-31 21:10:09 (152204): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-10-31 21:10:09 (152204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-10-31 21:10:09 (152204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-10-31 21:10:09 (152204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-10-31 21:10:09 (152204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-10-31 21:10:09 (152204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-10-31 21:10:09 (152204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-10-31 21:10:09 (152204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-10-31 21:10:09 (152204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-10-31 21:10:09 (152204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-10-31 21:10:09 (152204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-10-31 21:10:09 (152204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-10-31 21:10:09 (152204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-10-31 21:10:09 (152204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-10-31 21:10:09 (152204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-10-31 21:10:09 (152204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-10-31 21:10:09 (152204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-10-31 21:10:09 (152204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-10-31 21:10:09 (152204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-10-31 21:10:09 (152204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-10-31 21:10:09 (152204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-10-31 21:10:09 (152204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-10-31 21:10:09 (152204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-10-31 21:10:09 (152204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-10-31 21:10:09 (152204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-10-31 21:10:09 (152204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-10-31 21:10:09 (152204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-10-31 21:10:09 (152204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-10-31 21:10:09 (152204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-10-31 21:10:09 (152204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-10-31 21:10:09 (152204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-10-31 21:10:13 (152204): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-10-31 21:10:13 (152204): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-10-31 21:10:23 (152204): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-10-31 21:10:23 (152204): Guest Log: 00:00:00.000130 main     Log opened 2024-10-31T20:10:21.263046000Z
2024-10-31 21:10:23 (152204): Guest Log: 00:00:00.000225 main     OS Product: Linux
2024-10-31 21:10:23 (152204): Guest Log: 00:00:00.000245 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-10-31 21:10:23 (152204): Guest Log: 00:00:00.000262 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-10-31 21:10:23 (152204): Guest Log: 00:00:00.000279 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-10-31 21:10:23 (152204): Guest Log: 00:00:00.000279 main     Process ID: 1235
2024-10-31 21:10:23 (152204): Guest Log: 00:00:00.000280 main     Package type: LINUX_64BITS_GENERIC
2024-10-31 21:10:23 (152204): Guest Log: 00:00:00.003506 main     5.2.32 r132073 started. Verbose level = 0
2024-10-31 21:10:23 (152204): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-10-31 21:10:23 (152204): Guest Log: [INFO] Mounting shared directory
2024-10-31 21:10:23 (152204): Guest Log: [INFO] Checking for init_data.xml
2024-10-31 21:10:25 (152204): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-10-31 21:10:25 (152204): Guest Log: [INFO] Detected branch: prod
2024-10-31 21:10:25 (152204): Guest Log: This is the prod version of the ATLAS job wrapper
2024-10-31 21:10:25 (152204): Guest Log: Copying input files
2024-10-31 21:10:26 (152204): Guest Log: Copied input files into RunAtlas.
2024-10-31 21:10:27 (152204): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2024-10-31 21:10:34 (152204): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-10-31 21:10:34 (152204): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-10-31 21:10:34 (152204): Guest Log: 2.6.3.0 1504 0 29500 138955 4 1 3117281 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2024-10-31 21:10:34 (152204): Guest Log: copied the webapp to /var/www
2024-10-31 21:10:35 (152204): Guest Log: core_number=1
2024-10-31 21:10:35 (152204): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-10-31 21:10:35 (152204): Guest Log:  *** Starting ATLAS job. (PandaID=6385503198 taskID=41843827) ***
2024-10-31 22:49:06 (152204): Status Report: Elapsed Time: '6000.000000'
2024-10-31 22:49:06 (152204): Status Report: CPU Time: '5480.330000'
2024-11-01 00:28:07 (152204): Status Report: Elapsed Time: '12000.000000'
2024-11-01 00:28:07 (152204): Status Report: CPU Time: '11433.730000'
2024-11-01 02:07:08 (152204): Status Report: Elapsed Time: '18000.000000'
2024-11-01 02:07:08 (152204): Status Report: CPU Time: '17384.360000'
2024-11-01 03:46:09 (152204): Status Report: Elapsed Time: '24000.000000'
2024-11-01 03:46:09 (152204): Status Report: CPU Time: '23335.840000'
2024-11-01 05:25:11 (152204): Status Report: Elapsed Time: '30000.000000'
2024-11-01 05:25:11 (152204): Status Report: CPU Time: '29287.880000'
2024-11-01 07:04:12 (152204): Status Report: Elapsed Time: '36000.000000'
2024-11-01 07:04:12 (152204): Status Report: CPU Time: '35237.670000'
2024-11-01 08:43:13 (152204): Status Report: Elapsed Time: '42000.000000'
2024-11-01 08:43:13 (152204): Status Report: CPU Time: '41187.930000'
2024-11-01 09:08:18 (152204): Guest Log:  *** Job finished ***
2024-11-01 09:08:18 (152204): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-11-01 09:08:18 (152204): Guest Log: 2024-11-01 08:08:05,971 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185827088192)>', '<ExcThread(queue_monitor, started 140185241118464)>']
2024-11-01 09:08:18 (152204): Guest Log: 2024-11-01 08:08:07,975 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185827088192)>', '<ExcThread(queue_monitor, started 140185241118464)>']
2024-11-01 09:08:18 (152204): Guest Log: 2024-11-01 08:08:09,979 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185827088192)>', '<ExcThread(queue_monitor, started 140185241118464)>']
2024-11-01 09:08:18 (152204): Guest Log: 2024-11-01 08:08:11,087 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185827088192)>', '<ExcThread(queue_monitor, started 140185241118464)>']
2024-11-01 09:08:18 (152204): Guest Log: 2024-11-01 08:08:11,088 | INFO     | [job] queue monitor thread has finished
2024-11-01 09:08:18 (152204): Guest Log: 2024-11-01 08:08:11,983 | INFO     | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 140185827088192)>'])
2024-11-01 09:08:18 (152204): Guest Log: 2024-11-01 08:08:16,989 | INFO     | all workflow threads have been joined
2024-11-01 09:08:18 (152204): Guest Log: 2024-11-01 08:08:16,990 | INFO     | end of generic workflow (traces error code: 0)
2024-11-01 09:08:18 (152204): Guest Log: 2024-11-01 08:08:16,991 | INFO     | traces error code: 0
2024-11-01 09:08:18 (152204): Guest Log: 2024-11-01 08:08:16,991 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-11-01 09:08:18 (152204): Guest Log: 2024-11-01 08:08:17,282 [wrapper] ==== pilot stdout END ====
2024-11-01 09:08:18 (152204): Guest Log: 2024-11-01 08:08:17,296 [wrapper] ==== wrapper stdout RESUME ====
2024-11-01 09:08:18 (152204): Guest Log: 2024-11-01 08:08:17,310 [wrapper] pilotpid: 5782
2024-11-01 09:08:18 (152204): Guest Log: 2024-11-01 08:08:17,325 [wrapper] Pilot exit status: 0
2024-11-01 09:08:18 (152204): Guest Log: 2024-11-01 08:08:17,387 [wrapper] pandaids: 6385503198
2024-11-01 09:08:18 (152204): Guest Log: 2024-11-01 08:08:17,482 [wrapper] cleanup supervisor_pilot 17764 5783
2024-11-01 09:08:18 (152204): Guest Log: 2024-11-01 08:08:17,498 [wrapper] Test setup, not cleaning
2024-11-01 09:08:18 (152204): Guest Log: 2024-11-01 08:08:17,511 [wrapper] ==== wrapper stdout END ====
2024-11-01 09:08:18 (152204): Guest Log: 2024-11-01 08:08:17,527 [wrapper] ==== wrapper stderr END ====
2024-11-01 09:08:18 (152204): Guest Log: 2024-11-01 08:08:17,555 [wrapper] apfmon messages muted
2024-11-01 09:08:18 (152204): Guest Log:  *** Error codes and diagnostics ***
2024-11-01 09:08:18 (152204): Guest Log:  *** Listing of results directory ***
2024-11-01 09:08:18 (152204): Guest Log: total 19864
2024-11-01 09:08:18 (152204): Guest Log: -rw-r--r--. 1 atlas atlas  486088 Oct 31 19:21 pilot3.tar.gz
2024-11-01 09:08:18 (152204): Guest Log: -rw-r--r--. 1 atlas atlas    5652 Oct 31 19:39 queuedata.json
2024-11-01 09:08:18 (152204): Guest Log: -rwx------. 1 atlas atlas   34589 Oct 31 19:42 runpilot2-wrapper.sh
2024-11-01 09:08:18 (152204): Guest Log: -rw-r--r--. 1 atlas atlas   17569 Oct 31 20:10 start_atlas.sh
2024-11-01 09:08:18 (152204): Guest Log: -rw-r--r--. 1 atlas atlas    9568 Oct 31 20:10 init_data.xml
2024-11-01 09:08:18 (152204): Guest Log: -rw-r--r--. 1 atlas atlas  499923 Oct 31 20:10 input.tar.gz
2024-11-01 09:08:18 (152204): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Oct 31 20:10 EVNT.41779932._000008.pool.root.1 -> /data/./ATLAS.root_0
2024-11-01 09:08:18 (152204): Guest Log: -rw-r--r--. 1 atlas atlas    2894 Oct 31 20:10 pandaJob.out
2024-11-01 09:08:18 (152204): Guest Log: -rw-------. 1 atlas atlas     460 Oct 31 20:10 setup.sh.local
2024-11-01 09:08:18 (152204): Guest Log: -rw-------. 1 atlas atlas 1030011 Oct 31 20:10 agis_schedconf.cvmfs.json
2024-11-01 09:08:18 (152204): Guest Log: -rw-------. 1 atlas atlas 1602446 Oct 31 20:10 agis_ddmendpoints.agis.ALL.json
2024-11-01 09:08:18 (152204): Guest Log: drwx------. 4 atlas atlas    4096 Oct 31 20:10 pilot3
2024-11-01 09:08:18 (152204): Guest Log: -rw-------. 1 atlas atlas     907 Nov  1 07:45 heartbeat.json
2024-11-01 09:08:18 (152204): Guest Log: -rw-------. 1 atlas atlas      95 Nov  1 08:07 pilot_heartbeat.json
2024-11-01 09:08:18 (152204): Guest Log: drwxrwx---. 3 atlas atlas    4096 Nov  1 08:07 PanDA_Pilot-6385503198
2024-11-01 09:08:18 (152204): Guest Log: -rw-------. 1 atlas atlas    1026 Nov  1 08:07 memory_monitor_summary.json
2024-11-01 09:08:18 (152204): Guest Log: -rw-------. 1 atlas atlas 5508054 Nov  1 08:08 pilotlog.txt
2024-11-01 09:08:18 (152204): Guest Log: -rw-------. 1 atlas atlas 5524635 Nov  1 08:08 log.41843827._001237.job.log.1
2024-11-01 09:08:18 (152204): Guest Log: -rw-r--r--. 1 atlas atlas     571 Nov  1 08:08 runtime_log
2024-11-01 09:08:18 (152204): Guest Log: -rw-------. 1 atlas atlas 5539840 Nov  1 08:08 result.tar.gz
2024-11-01 09:08:18 (152204): Guest Log: -rw-r--r--. 1 atlas atlas   10508 Nov  1 08:08 runtime_log.err
2024-11-01 09:08:18 (152204): Guest Log: -rw-------. 1 atlas atlas     650 Nov  1 08:08 39nKDmMFqQ6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDm5sTMDmUCUSLn.diag
2024-11-01 09:08:18 (152204): Guest Log: Looking for outputfile HITS.41843827._001237.pool.root.1
2024-11-01 09:08:18 (152204): Guest Log: No HITS file was produced
2024-11-01 09:08:18 (152204): Guest Log: Successfully finished the ATLAS job!
2024-11-01 09:08:18 (152204): Guest Log: Copying the results back to the shared directory!
2024-11-01 09:08:19 (152204): Guest Log:  *** Contents of shared directory: ***
2024-11-01 09:08:19 (152204): Guest Log: total 375344
2024-11-01 09:08:19 (152204): Guest Log: -rw-r--r--. 1 root root 378267751 Oct 31 20:09 ATLAS.root_0
2024-11-01 09:08:19 (152204): Guest Log: -rw-r--r--. 1 root root      9568 Oct 31 20:09 init_data.xml
2024-11-01 09:08:19 (152204): Guest Log: -rw-r--r--. 1 root root    499923 Oct 31 20:09 input.tar.gz
2024-11-01 09:08:19 (152204): Guest Log: -rw-r--r--. 1 root root   5539840 Nov  1 08:08 result.tar.gz
2024-11-01 09:08:19 (152204): Guest Log: -rw-r--r--. 1 root root     17569 Oct 31 20:09 start_atlas.sh
2024-11-01 09:08:19 (152204): Guest Log:  *** Success! Shutting down the machine. ***
2024-11-01 09:08:19 (152204): VM Completion File Detected.
2024-11-01 09:08:19 (152204): Powering off VM.
2024-11-01 09:08:21 (152204): Successfully stopped VM.
2024-11-01 09:08:21 (152204): Deregistering VM. (boinc_49eadffeacec5545, slot#35)
2024-11-01 09:08:22 (152204): Removing network bandwidth throttle group from VM.
2024-11-01 09:08:22 (152204): Removing VM from VirtualBox.
09:08:28 (152204): called boinc_finish(0)

</stderr_txt>
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