Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2024-10-31 11:20:08 (11348): Detected: vboxwrapper 26206
2024-10-31 11:20:08 (11348): Detected: BOINC client v8.0.2
2024-10-31 11:20:08 (11348): Detected: VirtualBox VboxManage Interface (Version: 7.1.0)
2024-10-31 11:20:08 (11348): Successfully copied 'init_data.xml' to the shared directory.
2024-10-31 11:20:09 (11348): Create VM. (boinc_370ee41c49c05293, slot#4)
2024-10-31 11:20:09 (11348): Setting Memory Size for VM. (4400MB)
2024-10-31 11:20:10 (11348): Setting CPU Count for VM. (4)
2024-10-31 11:20:10 (11348): Setting Chipset Options for VM.
2024-10-31 11:20:10 (11348): Setting Graphics Controller Options for VM.
2024-10-31 11:20:11 (11348): Setting Boot Options for VM.
2024-10-31 11:20:11 (11348): Setting Network Configuration for NAT.
2024-10-31 11:20:11 (11348): Enabling VM Network Access.
2024-10-31 11:20:11 (11348): Disabling USB Support for VM.
2024-10-31 11:20:12 (11348): Disabling COM Port Support for VM.
2024-10-31 11:20:12 (11348): Disabling LPT Port Support for VM.
2024-10-31 11:20:12 (11348): Disabling Audio Support for VM.
2024-10-31 11:20:12 (11348): Disabling Clipboard Support for VM.
2024-10-31 11:20:13 (11348): Disabling Drag and Drop Support for VM.
2024-10-31 11:20:13 (11348): Adding storage controller(s) to VM.
2024-10-31 11:20:13 (11348): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-10-31 11:20:14 (11348): Adding VirtualBox Guest Additions to VM.
2024-10-31 11:20:14 (11348): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-10-31 11:20:14 (11348): forwarding host port 60438 to guest port 80
2024-10-31 11:20:14 (11348): Enabling remote desktop for VM.
2024-10-31 11:20:15 (11348): Required extension pack not installed, remote desktop not enabled.
2024-10-31 11:20:15 (11348): Enabling shared directory for VM.
2024-10-31 11:20:15 (11348): Starting VM using VBoxManage interface. (boinc_370ee41c49c05293, slot#4)
2024-10-31 11:20:19 (11348): Successfully started VM. (PID = '8928')
2024-10-31 11:20:19 (11348): Reporting VM Process ID to BOINC.
2024-10-31 11:20:19 (11348): Guest Log: BIOS: VirtualBox 7.1.0
2024-10-31 11:20:19 (11348): Guest Log: CPUID EDX: 0x178bfbff
2024-10-31 11:20:19 (11348): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-10-31 11:20:19 (11348): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-10-31 11:20:19 (11348): VM state change detected. (old = 'poweredoff', new = 'running')
2024-10-31 11:20:19 (11348): Detected: Web Application Enabled (http://localhost:60438)
2024-10-31 11:20:19 (11348): Preference change detected
2024-10-31 11:20:19 (11348): Setting CPU throttle for VM. (100%)
2024-10-31 11:20:19 (11348): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 360 seconds) or (Vbox_job.xml: 900 seconds))
2024-10-31 11:20:21 (11348): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-10-31 11:20:21 (11348): Guest Log: BIOS: Booting from Hard Disk...
2024-10-31 11:20:24 (11348): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-10-31 11:20:24 (11348): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-10-31 11:20:24 (11348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-10-31 11:20:24 (11348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-10-31 11:20:24 (11348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-10-31 11:20:24 (11348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-10-31 11:20:24 (11348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-10-31 11:20:24 (11348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-10-31 11:20:24 (11348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-10-31 11:20:24 (11348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-10-31 11:20:24 (11348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-10-31 11:20:24 (11348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-10-31 11:20:24 (11348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-10-31 11:20:24 (11348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-10-31 11:20:24 (11348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-10-31 11:20:24 (11348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-10-31 11:20:24 (11348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-10-31 11:20:24 (11348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-10-31 11:20:24 (11348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-10-31 11:20:24 (11348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-10-31 11:20:24 (11348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-10-31 11:20:24 (11348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-10-31 11:20:24 (11348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-10-31 11:20:24 (11348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-10-31 11:20:24 (11348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-10-31 11:20:24 (11348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-10-31 11:20:24 (11348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-10-31 11:20:24 (11348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-10-31 11:20:24 (11348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-10-31 11:20:24 (11348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-10-31 11:20:24 (11348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-10-31 11:20:24 (11348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-10-31 11:20:28 (11348): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-10-31 11:20:28 (11348): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-10-31 11:20:31 (11348): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-10-31 11:20:31 (11348): Guest Log: 00:00:00.000063 main     Log opened 2024-10-31T11:20:29.391027000Z
2024-10-31 11:20:31 (11348): Guest Log: 00:00:00.000117 main     OS Product: Linux
2024-10-31 11:20:31 (11348): Guest Log: 00:00:00.000132 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-10-31 11:20:31 (11348): Guest Log: 00:00:00.000144 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-10-31 11:20:31 (11348): Guest Log: 00:00:00.000156 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-10-31 11:20:31 (11348): Guest Log: 00:00:00.000157 main     Process ID: 1305
2024-10-31 11:20:31 (11348): Guest Log: 00:00:00.000157 main     Package type: LINUX_64BITS_GENERIC
2024-10-31 11:20:31 (11348): Guest Log: 00:00:00.000589 main     5.2.32 r132073 started. Verbose level = 0
2024-10-31 11:20:33 (11348): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-10-31 11:20:33 (11348): Guest Log: [INFO] Mounting shared directory
2024-10-31 11:20:33 (11348): Guest Log: [INFO] Checking for init_data.xml
2024-10-31 11:20:52 (11348): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-10-31 11:20:52 (11348): Guest Log: [INFO] Detected branch: prod
2024-10-31 11:20:54 (11348): Guest Log: This is the prod version of the ATLAS job wrapper
2024-10-31 11:20:54 (11348): Guest Log: Copying input files
2024-10-31 11:20:55 (11348): Guest Log: Copied input files into RunAtlas.
2024-10-31 11:20:55 (11348): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-10-31 11:20:55 (11348): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-10-31 11:20:55 (11348): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-10-31 11:20:55 (11348): Guest Log: Further information can be found at the LHC@home message board.
2024-10-31 11:21:08 (11348): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-10-31 11:21:10 (11348): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-10-31 11:21:10 (11348): Guest Log: 2.6.3.0 1587 0 30164 138941 4 1 3117399 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-10-31 11:21:10 (11348): Guest Log: copied the webapp to /var/www
2024-10-31 11:21:10 (11348): Guest Log: ATHENA_PROC_NUMBER=4
2024-10-31 11:21:10 (11348): Guest Log: ATHENA_CORE_NUMBER=4
2024-10-31 11:21:12 (11348): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-10-31 11:21:12 (11348): Guest Log:  *** Starting ATLAS job. (PandaID=6384990334 taskID=41843712) ***
2024-10-31 11:29:22 (11348): VM state change detected. (old = 'running', new = 'paused')
2024-10-31 11:36:07 (11348): VM state change detected. (old = 'paused', new = 'running')
2024-10-31 11:36:59 (11348): VM state change detected. (old = 'running', new = 'paused')
2024-10-31 11:45:05 (11348): VM state change detected. (old = 'paused', new = 'running')
2024-10-31 11:57:05 (11348): VM state change detected. (old = 'running', new = 'paused')
2024-10-31 12:20:57 (11348): VM state change detected. (old = 'paused', new = 'running')
2024-10-31 12:21:13 (11348): Guest Log: 00:22:01.602739 timesync vgsvcTimeSyncWorker: Radical guest time change: 2 332 068 334 000ns (GuestNow=1 730 377 273 061 005 000 ns GuestLast=1 730 374 940 992 671 000 ns fSetTimeLastLoop=true )
2024-10-31 12:32:42 (11348): VM state change detected. (old = 'running', new = 'paused')
2024-10-31 12:47:27 (11348): VM state change detected. (old = 'paused', new = 'running')
2024-10-31 12:48:26 (11348): VM state change detected. (old = 'running', new = 'paused')
2024-10-31 13:01:06 (11348): VM state change detected. (old = 'paused', new = 'running')
2024-10-31 14:06:33 (11348): Status Report: Elapsed Time: '6000.000000'
2024-10-31 14:06:33 (11348): Status Report: CPU Time: '1453.312500'
2024-10-31 14:18:24 (11348): VM state change detected. (old = 'running', new = 'paused')
2024-10-31 14:18:43 (11348): VM state change detected. (old = 'paused', new = 'running')
2024-10-31 14:21:13 (11348): VM state change detected. (old = 'running', new = 'paused')
2024-10-31 14:21:34 (11348): VM state change detected. (old = 'paused', new = 'running')
2024-10-31 14:33:27 (11348): Guest Log:  *** Job finished ***
2024-10-31 14:33:27 (11348): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-10-31 14:33:27 (11348): Guest Log: 2024-10-31 14:32:38,066 | INFO     | [job] validate thread has finished
2024-10-31 14:33:27 (11348): Guest Log: 2024-10-31 14:32:38,297 | INFO     | [payload] control thread has finished
2024-10-31 14:33:27 (11348): Guest Log: 2024-10-31 14:32:39,811 | INFO     | [data] queue_monitor thread has finished
2024-10-31 14:33:27 (11348): Guest Log: 2024-10-31 14:32:40,706 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139973329692480)>', '<ExcThread(monitor, started 139972296300288)>']
2024-10-31 14:33:27 (11348): Guest Log: 2024-10-31 14:32:41,135 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-10-31 14:33:27 (11348): Guest Log: 2024-10-31 14:32:41,135 | INFO     | [monitor] control thread has ended
2024-10-31 14:33:27 (11348): Guest Log: 2024-10-31 14:32:45,712 | INFO     | all workflow threads have been joined
2024-10-31 14:33:27 (11348): Guest Log: 2024-10-31 14:32:45,712 | INFO     | end of generic workflow (traces error code: 0)
2024-10-31 14:33:27 (11348): Guest Log: 2024-10-31 14:32:45,712 | INFO     | traces error code: 0
2024-10-31 14:33:27 (11348): Guest Log: 2024-10-31 14:32:45,712 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-10-31 14:33:27 (11348): Guest Log: 2024-10-31 14:32:45,746 [wrapper] ==== pilot stdout END ====
2024-10-31 14:33:27 (11348): Guest Log: 2024-10-31 14:32:45,749 [wrapper] ==== wrapper stdout RESUME ====
2024-10-31 14:33:27 (11348): Guest Log: 2024-10-31 14:32:45,751 [wrapper] pilotpid: 6154
2024-10-31 14:33:27 (11348): Guest Log: 2024-10-31 14:32:45,753 [wrapper] Pilot exit status: 0
2024-10-31 14:33:27 (11348): Guest Log: 2024-10-31 14:32:45,760 [wrapper] pandaids: 6384990334
2024-10-31 14:33:27 (11348): Guest Log: 2024-10-31 14:32:45,772 [wrapper] cleanup supervisor_pilot 10787 6155
2024-10-31 14:33:27 (11348): Guest Log: 2024-10-31 14:32:45,774 [wrapper] Test setup, not cleaning
2024-10-31 14:33:27 (11348): Guest Log: 2024-10-31 14:32:45,776 [wrapper] ==== wrapper stdout END ====
2024-10-31 14:33:27 (11348): Guest Log: 2024-10-31 14:32:45,778 [wrapper] ==== wrapper stderr END ====
2024-10-31 14:33:27 (11348): Guest Log: 2024-10-31 14:32:45,782 [wrapper] apfmon messages muted
2024-10-31 14:33:27 (11348): Guest Log:  *** Error codes and diagnostics ***
2024-10-31 14:33:27 (11348): Guest Log:     "exeErrorCode": 0,
2024-10-31 14:33:27 (11348): Guest Log:     "exeErrorDiag": "",
2024-10-31 14:33:27 (11348): Guest Log:     "pilotErrorCode": 0,
2024-10-31 14:33:27 (11348): Guest Log:     "pilotErrorDiag": "",
2024-10-31 14:33:27 (11348): Guest Log:  *** Listing of results directory ***
2024-10-31 14:33:27 (11348): Guest Log: total 57452
2024-10-31 14:33:27 (11348): Guest Log: -rw-r--r--. 1 atlas atlas   486088 Oct 31 10:17 pilot3.tar.gz
2024-10-31 14:33:27 (11348): Guest Log: -rw-r--r--. 1 atlas atlas     5652 Oct 31 10:29 queuedata.json
2024-10-31 14:33:27 (11348): Guest Log: -rwx------. 1 atlas atlas    34589 Oct 31 10:33 runpilot2-wrapper.sh
2024-10-31 14:33:27 (11348): Guest Log: -rwxr-xr-x. 1 atlas atlas     9158 Oct 31 11:20 init_data.xml
2024-10-31 14:33:27 (11348): Guest Log: -rwxr-xr-x. 1 atlas atlas   499921 Oct 31 11:20 input.tar.gz
2024-10-31 14:33:27 (11348): Guest Log: -rwxr-xr-x. 1 atlas atlas    17569 Oct 31 11:20 start_atlas.sh
2024-10-31 14:33:27 (11348): Guest Log: lrwxrwxrwx. 1 atlas atlas       20 Oct 31 11:20 EVNT.41780282._000005.pool.root.1 -> /data/./ATLAS.root_0
2024-10-31 14:33:27 (11348): Guest Log: -rw-r--r--. 1 atlas atlas     2892 Oct 31 11:21 pandaJob.out
2024-10-31 14:33:27 (11348): Guest Log: -rw-------. 1 atlas atlas      424 Oct 31 11:22 setup.sh.local
2024-10-31 14:33:27 (11348): Guest Log: -rw-------. 1 atlas atlas  1611897 Oct 31 11:36 agis_ddmendpoints.agis.ALL.json
2024-10-31 14:33:27 (11348): Guest Log: -rw-------. 1 atlas atlas  1030018 Oct 31 11:37 agis_schedconf.cvmfs.json
2024-10-31 14:33:27 (11348): Guest Log: drwx------. 4 atlas atlas     4096 Oct 31 11:37 pilot3
2024-10-31 14:33:27 (11348): Guest Log: -rw-------. 1 atlas atlas 52212228 Oct 31 14:31 HITS.41843712._006670.pool.root.1
2024-10-31 14:33:27 (11348): Guest Log: -rw-------. 1 atlas atlas     1024 Oct 31 14:32 memory_monitor_summary.json
2024-10-31 14:33:27 (11348): Guest Log: -rw-------. 1 atlas atlas   771254 Oct 31 14:32 log.41843712._006670.job.log.tgz.1
2024-10-31 14:33:27 (11348): Guest Log: -rw-------. 1 atlas atlas       97 Oct 31 14:32 pilot_heartbeat.json
2024-10-31 14:33:27 (11348): Guest Log: -rw-------. 1 atlas atlas     8547 Oct 31 14:32 heartbeat.json
2024-10-31 14:33:27 (11348): Guest Log: -rw-------. 1 atlas atlas     4275 Oct 31 14:32 pilotlog.txt
2024-10-31 14:33:27 (11348): Guest Log: -rw-------. 1 atlas atlas   633125 Oct 31 14:32 log.41843712._006670.job.log.1
2024-10-31 14:33:27 (11348): Guest Log: -rw-------. 1 atlas atlas      353 Oct 31 14:32 output.list
2024-10-31 14:33:27 (11348): Guest Log: -rw-r--r--. 1 atlas atlas      620 Oct 31 14:32 runtime_log
2024-10-31 14:33:27 (11348): Guest Log: -rw-------. 1 atlas atlas  1423360 Oct 31 14:32 result.tar.gz
2024-10-31 14:33:27 (11348): Guest Log: -rw-r--r--. 1 atlas atlas    10965 Oct 31 14:32 runtime_log.err
2024-10-31 14:33:27 (11348): Guest Log: -rw-------. 1 atlas atlas      665 Oct 31 14:32 hjhLDmsfhQ6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmXYPMDmaS28cm.diag
2024-10-31 14:33:27 (11348): Guest Log: Looking for outputfile HITS.41843712._006670.pool.root.1
2024-10-31 14:33:27 (11348): Guest Log: HITS file was successfully produced
2024-10-31 14:33:27 (11348): Guest Log: -rw-------. 1 atlas atlas 52212228 Oct 31 14:31 /home/atlas/RunAtlas/HITS.41843712._006670.pool.root.1
2024-10-31 14:33:27 (11348): Guest Log: Successfully finished the ATLAS job!
2024-10-31 14:33:27 (11348): Guest Log: Copying the results back to the shared directory!
2024-10-31 14:33:27 (11348): Guest Log:  *** Contents of shared directory: ***
2024-10-31 14:33:27 (11348): Guest Log: total 428636
2024-10-31 14:33:27 (11348): Guest Log: -rwxrwxrwx. 1 root root 384742645 Oct 31 11:20 ATLAS.root_0
2024-10-31 14:33:27 (11348): Guest Log: -rwxrwxrwx. 1 root root  52212228 Oct 31  2024 HITS.pool.root.1
2024-10-31 14:33:27 (11348): Guest Log: -rwxrwxrwx. 1 root root      9158 Oct 31 11:20 init_data.xml
2024-10-31 14:33:27 (11348): Guest Log: -rwxrwxrwx. 1 root root    499921 Oct 31 11:05 input.tar.gz
2024-10-31 14:33:27 (11348): Guest Log: -rwxrwxrwx. 1 root root   1423360 Oct 31  2024 result.tar.gz
2024-10-31 14:33:27 (11348): Guest Log: -rwxrwxrwx. 1 root root     17569 Oct 31 11:05 start_atlas.sh
2024-10-31 14:33:27 (11348): Guest Log:  *** Success! Shutting down the machine. ***
2024-10-31 14:33:27 (11348): VM Completion File Detected.
2024-10-31 14:33:27 (11348): Powering off VM.
2024-10-31 14:33:27 (11348): Successfully stopped VM.
2024-10-31 14:33:27 (11348): Deregistering VM. (boinc_370ee41c49c05293, slot#4)
2024-10-31 14:33:27 (11348): Removing network bandwidth throttle group from VM.
2024-10-31 14:33:28 (11348): Removing VM from VirtualBox.
14:33:33 (11348): called boinc_finish(0)

</stderr_txt>
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