Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<message>
finish file present too long
</message>
<stderr_txt>
04:13:12 (81221): wrapper (7.7.26015): starting
04:13:12 (81221): wrapper: running run_atlas (--nthreads 8)
[2024-10-31 04:13:12] Arguments: --nthreads 8
[2024-10-31 04:13:12] Threads: 8
[2024-10-31 04:13:12] Checking for CVMFS
[2024-10-31 04:13:13] Probing /cvmfs/atlas.cern.ch... OK
[2024-10-31 04:13:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-10-31 04:13:13] Running cvmfs_config stat atlas.cern.ch
[2024-10-31 04:13:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-10-31 04:13:14] 2.11.2.0 32619 2110 211496 138932 3 653 14647138 18432000 25118 130560 0 24994110 99.098 51889463 60897 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2024-10-31 04:13:14] CVMFS is ok
[2024-10-31 04:13:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-10-31 04:13:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-10-31 04:13:14] Further information can be found at the LHC@home message board.
[2024-10-31 04:13:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-10-31 04:13:14] Checking for apptainer binary...
[2024-10-31 04:13:14] Using apptainer found in PATH at /usr/bin/apptainer
[2024-10-31 04:13:14] Running /usr/bin/apptainer --version
[2024-10-31 04:13:14] apptainer version 1.3.2-1.el7
[2024-10-31 04:13:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-10-31 04:13:18] c-212-7.aglt2.org
[2024-10-31 04:13:18] apptainer works
[2024-10-31 04:13:18] Set ATHENA_PROC_NUMBER=8
[2024-10-31 04:13:18] Set ATHENA_CORE_NUMBER=8
[2024-10-31 04:13:18] Starting ATLAS job with PandaID=6384794630
[2024-10-31 04:13:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
15:40:10 (81221): BOINC client no longer exists - exiting
15:40:10 (81221): timer handler: client dead, exiting
15:48:06 (71709): wrapper (7.7.26015): starting
15:48:06 (71709): wrapper: running run_atlas (--nthreads 8)
[2024-10-31 15:48:06] Arguments: --nthreads 8
[2024-10-31 15:48:06] Threads: 8
[2024-10-31 15:48:06] This job has been restarted, cleaning up previous attempt
[2024-10-31 15:48:06] Checking for CVMFS
[2024-10-31 15:48:06] Probing /cvmfs/atlas.cern.ch... OK
[2024-10-31 15:48:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-10-31 15:48:06] Running cvmfs_config stat atlas.cern.ch
[2024-10-31 15:48:06] /usr/bin/cvmfs_config: line 944: cd: /cvmfs/ligo.storage.igwn.org: Permission denied
[2024-10-31 15:48:06] 
[2024-10-31 15:48:06] CVMFS is ok
[2024-10-31 15:48:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-10-31 15:48:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-10-31 15:48:06] Further information can be found at the LHC@home message board.
[2024-10-31 15:48:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-10-31 15:48:06] Checking for apptainer binary...
[2024-10-31 15:48:06] Using apptainer found in PATH at /usr/bin/apptainer
[2024-10-31 15:48:06] Running /usr/bin/apptainer --version
[2024-10-31 15:48:06] apptainer version 1.3.2-1.el7
[2024-10-31 15:48:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-10-31 15:48:09] c-212-7.aglt2.org
[2024-10-31 15:48:09] apptainer works
[2024-10-31 15:48:09] Set ATHENA_PROC_NUMBER=8
[2024-10-31 15:48:09] Set ATHENA_CORE_NUMBER=8
[2024-10-31 15:48:09] Starting ATLAS job with PandaID=6384794630
[2024-10-31 15:48:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:31:20 (71709): BOINC client no longer exists - exiting
20:31:20 (71709): timer handler: client dead, exiting
20:46:44 (60497): wrapper (7.7.26015): starting
20:46:44 (60497): wrapper: running run_atlas (--nthreads 8)
[2024-10-31 20:46:45] Arguments: --nthreads 8
[2024-10-31 20:46:45] Threads: 8
[2024-10-31 20:46:45] This job has been restarted, cleaning up previous attempt
[2024-10-31 20:46:45] Checking for CVMFS
[2024-10-31 20:46:45] Probing /cvmfs/atlas.cern.ch... OK
[2024-10-31 20:46:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-10-31 20:46:45] Running cvmfs_config stat atlas.cern.ch
[2024-10-31 20:46:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-10-31 20:46:45] 2.11.2.0 83672 162 84436 138963 1 334 17219866 18432001 29995 130560 0 2249891 98.029 11655266 64522 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2024-10-31 20:46:45] CVMFS is ok
[2024-10-31 20:46:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-10-31 20:46:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-10-31 20:46:45] Further information can be found at the LHC@home message board.
[2024-10-31 20:46:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-10-31 20:46:45] Checking for apptainer binary...
[2024-10-31 20:46:45] Using apptainer found in PATH at /usr/bin/apptainer
[2024-10-31 20:46:45] Running /usr/bin/apptainer --version
[2024-10-31 20:46:45] apptainer version 1.3.2-1.el7
[2024-10-31 20:46:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-10-31 20:46:48] c-212-7.aglt2.org
[2024-10-31 20:46:48] apptainer works
[2024-10-31 20:46:48] Set ATHENA_PROC_NUMBER=8
[2024-10-31 20:46:48] Set ATHENA_CORE_NUMBER=8
[2024-10-31 20:46:48] Starting ATLAS job with PandaID=6384794630
[2024-10-31 20:46:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-10-31 20:50:03] Job failed
[2024-10-31 20:50:03] ++ pwd
[2024-10-31 20:50:03] + export RUNTIME_CONFIG_DIR=/tmp/boinchome/slots/4/
[2024-10-31 20:50:03] + RUNTIME_CONFIG_DIR=/tmp/boinchome/slots/4/
[2024-10-31 20:50:03] + mv ATLAS.root_0 EVNT.41779572._000008.pool.root.1
[2024-10-31 20:50:03] mv: &#226;&#128;&#152;ATLAS.root_0&#226;&#128;&#153; and &#226;&#128;&#152;EVNT.41779572._000008.pool.root.1&#226;&#128;&#153; are the same file
[2024-10-31 20:50:03] + tar --strip-components=5 -xvf input.tar.gz
[2024-10-31 20:50:03] + umask 077
[2024-10-31 20:50:03] ++ date +%s
[2024-10-31 20:50:03] + ACCOUNTING_STARTTIME=1730422010
[2024-10-31 20:50:03] + echo 'Detecting resource accounting method available for the job.'
[2024-10-31 20:50:03] Detecting resource accounting method available for the job.
[2024-10-31 20:50:03] + JOB_ACCOUNTING=
[2024-10-31 20:50:03] + command -v arc-job-cgroup
[2024-10-31 20:50:03] + '[' -z '' ']'
[2024-10-31 20:50:03] + GNU_TIME=/usr/bin/time
[2024-10-31 20:50:03] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2024-10-31 20:50:03] Looking for /usr/bin/time tool for accounting measurements
[2024-10-31 20:50:03] + '[' '!' -z /usr/bin/time ']'
[2024-10-31 20:50:03] + /usr/bin/time --version
[2024-10-31 20:50:03] + echo 'GNU time found and will be used for job accounting.'
[2024-10-31 20:50:03] GNU time found and will be used for job accounting.
[2024-10-31 20:50:03] + JOB_ACCOUNTING=gnutime
[2024-10-31 20:50:03] + '[' -z gnutime ']'
[2024-10-31 20:50:03] + export PANDA_JSID=harvester-CERN_central_ACTA
[2024-10-31 20:50:03] + PANDA_JSID=harvester-CERN_central_ACTA
[2024-10-31 20:50:03] + export GTAG=http://aipanda404.cern.ch/data/jobs/2024-10-31/BOINC_MCORE/6384794630.out
[2024-10-31 20:50:03] + GTAG=http://aipanda404.cern.ch/data/jobs/2024-10-31/BOINC_MCORE/6384794630.out
[2024-10-31 20:50:03] + export PILOT_NOKILL=YES
[2024-10-31 20:50:03] + PILOT_NOKILL=YES
[2024-10-31 20:50:03] + export GRID_GLOBAL_JOBID=OkRLDmXseQ6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmtKOMDmLLlq3m
[2024-10-31 20:50:03] + GRID_GLOBAL_JOBID=OkRLDmXseQ6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmtKOMDmLLlq3m
[2024-10-31 20:50:03] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/OkRLDmXseQ6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmtKOMDmLLlq3m
[2024-10-31 20:50:03] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/OkRLDmXseQ6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmtKOMDmLLlq3m
[2024-10-31 20:50:03] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2024-10-31 20:50:03] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2024-10-31 20:50:03] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2024-10-31 20:50:03] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2024-10-31 20:50:03] ++ pwd
[2024-10-31 20:50:03] + RUNTIME_JOB_DIR=/tmp/boinchome/slots/4
[2024-10-31 20:50:03] + RUNTIME_JOB_STDIN=/dev/null
[2024-10-31 20:50:03] ++ pwd
[2024-10-31 20:50:03] + RUNTIME_JOB_STDOUT=/tmp/boinchome/slots/4/log.41843983._000293.job.log.1
[2024-10-31 20:50:03] ++ pwd
[2024-10-31 20:50:03] + RUNTIME_JOB_STDERR=/tmp/boinchome/slots/4/log.41843983._000293.job.log.1
[2024-10-31 20:50:03] ++ pwd
[2024-10-31 20:50:03] + RUNTIME_JOB_DIAG=/tmp/boinchome/slots/4.diag
[2024-10-31 20:50:03] + '[' '!' -z '' ']'
[2024-10-31 20:50:03] + RUNTIME_LOCAL_SCRATCH_DIR=
[2024-10-31 20:50:03] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2024-10-31 20:50:03] + RUNTIME_FRONTEND_SEES_NODE=
[2024-10-31 20:50:03] + RUNTIME_NODE_SEES_FRONTEND=yes
[2024-10-31 20:50:03] + '[' '!' -z '' ']'
[2024-10-31 20:50:03] + '[' -z yes ']'
[2024-10-31 20:50:03] ++ pwd
[2024-10-31 20:50:03] + RUNTIME_JOB_DIAG=/tmp/boinchome/slots/4/OkRLDmXseQ6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmtKOMDmLLlq3m.diag
[2024-10-31 20:50:03] + runtimeenvironments=
[2024-10-31 20:50:03] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2024-10-31 20:50:03] + RTE_function_0 1
[2024-10-31 20:50:03] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-10-31 20:50:03] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-10-31 20:50:03] + export BOINC_APP=ATLAS
[2024-10-31 20:50:03] + BOINC_APP=ATLAS
[2024-10-31 20:50:03] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-10-31 20:50:03] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-10-31 20:50:03] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-10-31 20:50:03] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-10-31 20:50:03] + '[' -z 1 ']'
[2024-10-31 20:50:03] + '[' 1 == 1 ']'
[2024-10-31 20:50:03] + shift
[2024-10-31 20:50:03] + FRONTIER_SQUID_NDGF='(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)'
[2024-10-31 20:50:03] + FRONTIER_BACKUP='(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-10-31 20:50:03] + FRONTIER_WPAD='(proxyconfigurl=http://grid-wpad/wpad.dat)'
[2024-10-31 20:50:03] + export ATLAS_LOCAL_AREA=/tmp/boinchome/slots/4/
[2024-10-31 20:50:03] + ATLAS_LOCAL_AREA=/tmp/boinchome/slots/4/
[2024-10-31 20:50:03] + '[' -e /tmp/boinchome/slots/4/init_data.xml ']'
[2024-10-31 20:50:03] + grep '<use_http_proxy/>' /tmp/boinchome/slots/4/init_data.xml
[2024-10-31 20:50:03] ++ sed -e '/<proxy_info>/,/<\/proxy_info>/ s/^.*<http_server_name>\([^<]*\).*/\1/p' -n /tmp/boinchome/slots/4/init_data.xml
[2024-10-31 20:50:03] + PROXY_HOST=sl-um-es2.slateci.io
[2024-10-31 20:50:03] ++ sed -e '/<proxy_info>/,/<\/proxy_info>/ s/^.*<http_server_port>\([^<]*\).*/\1/p' -n /tmp/boinchome/slots/4/init_data.xml
[2024-10-31 20:50:03] + PROXY_PORT=6081
[2024-10-31 20:50:03] + '[' -n sl-um-es2.slateci.io ']'
[2024-10-31 20:50:03] + '[' -n 6081 ']'
[2024-10-31 20:50:03] + FRONTIER_SERVER_URLS='(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)'
[2024-10-31 20:50:03] + FRONTIER_PROXY_URLS='(proxyurl=http://sl-um-es2.slateci.io:6081)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-10-31 20:50:03] + echo 'export FRONTIER_SERVER="(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://sl-um-es2.slateci.io:6081)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)"'
[2024-10-31 20:50:03] + export 'FRONTIER_SERVER=(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://sl-um-es2.slateci.io:6081)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-10-31 20:50:03] + FRONTIER_SERVER='(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://sl-um-es2.slateci.io:6081)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-10-31 20:50:03] + '[' 0 -ne 0 ']'
[2024-10-31 20:50:03] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2024-10-31 20:50:03] + '[' -f /etc/os-release ']'
[2024-10-31 20:50:03] +++ cat /etc/os-release
[2024-10-31 20:50:03] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2024-10-31 20:50:03] +++ NAME='CentOS Linux'
[2024-10-31 20:50:03] +++ VERSION='7 (Core)'
[2024-10-31 20:50:03] +++ ID=centos
[2024-10-31 20:50:03] +++ ID_LIKE='rhel fedora'
[2024-10-31 20:50:03] +++ VERSION_ID=7
[2024-10-31 20:50:03] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2024-10-31 20:50:03] +++ ANSI_COLOR='0;31'
[2024-10-31 20:50:03] +++ CPE_NAME=cpe:/o:centos:centos:7
[2024-10-31 20:50:03] +++ HOME_URL=https://www.centos.org/
[2024-10-31 20:50:03] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2024-10-31 20:50:03] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2024-10-31 20:50:03] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2024-10-31 20:50:03] +++ REDHAT_SUPPORT_PRODUCT=centos
[2024-10-31 20:50:03] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2024-10-31 20:50:03] ++ echo 'CentOS Linux 7 (Core)'
[2024-10-31 20:50:03] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2024-10-31 20:50:03] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2024-10-31 20:50:03] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2024-10-31 20:50:03] + HOME=/tmp/boinchome/slots/4
[2024-10-31 20:50:03] + export HOME
[2024-10-31 20:50:03] + cd /tmp/boinchome/slots/4
[2024-10-31 20:50:03] + '[' '!' -z '' ']'
[2024-10-31 20:50:03] + '[' -z '' ']'
[2024-10-31 20:50:03] ++ /bin/hostname -f
[2024-10-31 20:50:03] + nodename=c-212-7.aglt2.org
[2024-10-31 20:50:03] + echo nodename=c-212-7.aglt2.org
[2024-10-31 20:50:03] + echo Processors=2
[2024-10-31 20:50:03] + echo Nodecount=1
[2024-10-31 20:50:03] + echo Benchmark=HEPSPEC:1.0
[2024-10-31 20:50:03] + executable=./runpilot2-wrapper.sh
[2024-10-31 20:50:03] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2024-10-31 20:50:03] ++ dd if=./runpilot2-wrapper.sh count=1
[2024-10-31 20:50:03] ++ head -n 1
[2024-10-31 20:50:03] ++ tr -d '\0'
[2024-10-31 20:50:03] + line1='#!/bin/bash'
[2024-10-31 20:50:03] ++ echo '#!/bin/bash'
[2024-10-31 20:50:03] ++ sed -n 's/^#! *//p'
[2024-10-31 20:50:03] + shebang=/bin/bash
[2024-10-31 20:50:03] ++ echo /bin/bash
[2024-10-31 20:50:03] ++ awk '{print $1}'
[2024-10-31 20:50:03] + interpreter=/bin/bash
[2024-10-31 20:50:03] + '[' /bin/bash = /usr/bin/env ']'
[2024-10-31 20:50:03] + '[' x/bin/bash = x ']'
[2024-10-31 20:50:03] + type /bin/bash
[2024-10-31 20:50:03] + '[' xgnutime = xgnutime ']'
[2024-10-31 20:50:03] + /usr/bin/time -o /tmp/boinchome/slots/4/OkRLDmXseQ6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmtKOMDmLLlq3m.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.9.1.13 -z -t --piloturl local --mute --container
[2024-10-31 20:50:03] + RESULT=1
[2024-10-31 20:50:03] + sed -i -e /nodename=/d /tmp/boinchome/slots/4/OkRLDmXseQ6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmtKOMDmLLlq3m.diag
[2024-10-31 20:50:03] ++ grep domain_name init_data.xml
[2024-10-31 20:50:03] ++ awk -F '<' '{print $1}'
[2024-10-31 20:50:03] ++ sed -e 's# #_#g'
[2024-10-31 20:50:03] ++ awk -F '>' '{print $2}'
[2024-10-31 20:50:03] + hostname=c-212-7.aglt2.org
[2024-10-31 20:50:03] ++ grep user_name init_data.xml
[2024-10-31 20:50:03] ++ awk -F '>' '{print $2}'
[2024-10-31 20:50:03] ++ awk -F '<' '{print $1}'
[2024-10-31 20:50:03] ++ sed -e 's# #_#g'
[2024-10-31 20:50:03] + username=AGLT2
[2024-10-31 20:50:03] + nodename=AGLT2@c-212-7.aglt2.org
[2024-10-31 20:50:03] + echo nodename=AGLT2@c-212-7.aglt2.org
[2024-10-31 20:50:03] + '[' -n 8 ']'
[2024-10-31 20:50:03] + sed -i -e s/Processors=1/Processors=8/ /tmp/boinchome/slots/4/OkRLDmXseQ6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmtKOMDmLLlq3m.diag
[2024-10-31 20:50:03] + echo exitcode=1
[2024-10-31 20:50:03] + runtimeenvironments=
[2024-10-31 20:50:03] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2024-10-31 20:50:03] + RTE_function_0 2
[2024-10-31 20:50:03] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-10-31 20:50:03] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-10-31 20:50:03] + export BOINC_APP=ATLAS
[2024-10-31 20:50:03] + BOINC_APP=ATLAS
[2024-10-31 20:50:03] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-10-31 20:50:03] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-10-31 20:50:03] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-10-31 20:50:03] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-10-31 20:50:03] + '[' -z 2 ']'
[2024-10-31 20:50:03] + '[' 2 == 1 ']'
[2024-10-31 20:50:03] + '[' 0 -ne 0 ']'
[2024-10-31 20:50:03] + echo 'zip all output files'
[2024-10-31 20:50:03] + flist='*.diag '
[2024-10-31 20:50:03] + for f in ./heartbeat.json ./output.list ./log.41843983._000293.job.log.1 ./log.41843983._000293.job.log.1 ./gmlog/
[2024-10-31 20:50:03] + '[' -e ./heartbeat.json ']'
[2024-10-31 20:50:03] + flist='*.diag  ./heartbeat.json'
[2024-10-31 20:50:03] + for f in ./heartbeat.json ./output.list ./log.41843983._000293.job.log.1 ./log.41843983._000293.job.log.1 ./gmlog/
[2024-10-31 20:50:03] + '[' -e ./output.list ']'
[2024-10-31 20:50:03] + for f in ./heartbeat.json ./output.list ./log.41843983._000293.job.log.1 ./log.41843983._000293.job.log.1 ./gmlog/
[2024-10-31 20:50:03] + '[' -e ./log.41843983._000293.job.log.1 ']'
[2024-10-31 20:50:03] + flist='*.diag  ./heartbeat.json ./log.41843983._000293.job.log.1'
[2024-10-31 20:50:03] + for f in ./heartbeat.json ./output.list ./log.41843983._000293.job.log.1 ./log.41843983._000293.job.log.1 ./gmlog/
[2024-10-31 20:50:03] + '[' -e ./log.41843983._000293.job.log.1 ']'
[2024-10-31 20:50:03] + flist='*.diag  ./heartbeat.json ./log.41843983._000293.job.log.1 ./log.41843983._000293.job.log.1'
[2024-10-31 20:50:03] + for f in ./heartbeat.json ./output.list ./log.41843983._000293.job.log.1 ./log.41843983._000293.job.log.1 ./gmlog/
[2024-10-31 20:50:03] + '[' -e ./gmlog/ ']'
[2024-10-31 20:50:03] + '[' -f output.list ']'
[2024-10-31 20:50:03] + tar cvf result.tar.gz OkRLDmXseQ6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmtKOMDmLLlq3m.diag ./heartbeat.json ./log.41843983._000293.job.log.1 ./log.41843983._000293.job.log.1
[2024-10-31 20:50:03] + '[' xgnutime = xcgroup ']'
[2024-10-31 20:50:03] + '[' -n '' ']'
[2024-10-31 20:50:03] + '[' -n '' ']'
[2024-10-31 20:50:03] ++ date +%s
[2024-10-31 20:50:03] + ACCOUNTING_ENDTIME=1730422202
[2024-10-31 20:50:03] ++ date -d '1970-01-01 UTC 1730422010 seconds' +%Y%m%d%H%M%SZ
[2024-10-31 20:50:03] + echo LRMSStartTime=20241031204650Z
[2024-10-31 20:50:03] ++ date -d '1970-01-01 UTC 1730422202 seconds' +%Y%m%d%H%M%SZ
[2024-10-31 20:50:03] + echo LRMSEndTime=20241031205002Z
[2024-10-31 20:50:03] + echo walltime=192
[2024-10-31 20:50:03] + echo exitcode=1
[2024-10-31 20:50:03] + exit 1
[2024-10-31 20:50:03] INFO:    Terminating fuse-overlayfs after timeout
[2024-10-31 20:50:03] INFO:    Timeouts can be caused by a running background process
[2024-10-31 20:50:03] ./runtime_log
[2024-10-31 20:50:03] ./runtime_log.err
[2024-10-31 20:50:03] ./PanDA_Pilot-6384794630/PoolFileCatalog.xml.BAK
[2024-10-31 20:50:03] ./PanDA_Pilot-6384794630/prmon.log
[2024-10-31 20:50:03] ./PanDA_Pilot-6384794630/pilotlog.txt
[2024-10-31 20:50:03] ./PanDA_Pilot-6384794630/PoolFileCatalog.xml.AthenaMP-saved
[2024-10-31 20:50:03] ./PanDA_Pilot-6384794630/log.EVNTtoHITS
[2024-10-31 20:50:03] ./PanDA_Pilot-6384794630/PoolFileCatalog.xml
[2024-10-31 20:50:03] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2024-10-31 20:50:03] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2024-10-31 20:50:03] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2024-10-31 20:50:03] ./pilot3/pilot/util/loggingsupport.py
[2024-10-31 20:50:03] ./pilot3/pilot/util/lokirealtimelogger.py
[2024-10-31 20:50:03] ./pilot3/pilot/util/realtimelogger.py
[2024-10-31 20:50:03] ./pilotlog.txt
[2024-10-31 20:50:03] ./log.41843983._000293.job.log.1
21:00:03 (60497): run_atlas exited; CPU time 14.151865
21:00:03 (60497): app exit status: 0x1
21:00:03 (60497): called boinc_finish(195)
21:09:46 (40608): wrapper (7.7.26015): starting
21:09:46 (40608): wrapper: running run_atlas (--nthreads 8)
[2024-10-31 21:09:46] Arguments: --nthreads 8
[2024-10-31 21:09:46] Threads: 8
[2024-10-31 21:09:46] This job has been restarted, cleaning up previous attempt
[2024-10-31 21:09:46] Checking for CVMFS
[2024-10-31 21:09:46] Probing /cvmfs/atlas.cern.ch... OK
[2024-10-31 21:09:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-10-31 21:09:47] Running cvmfs_config stat atlas.cern.ch
[2024-10-31 21:09:47] /usr/bin/cvmfs_config: line 944: cd: /cvmfs/ligo.storage.igwn.org: Permission denied
[2024-10-31 21:09:47] 
[2024-10-31 21:09:47] CVMFS is ok
[2024-10-31 21:09:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-10-31 21:09:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-10-31 21:09:47] Further information can be found at the LHC@home message board.
[2024-10-31 21:09:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-10-31 21:09:47] Checking for apptainer binary...
[2024-10-31 21:09:47] Using apptainer found in PATH at /usr/bin/apptainer
[2024-10-31 21:09:47] Running /usr/bin/apptainer --version
[2024-10-31 21:09:47] apptainer version 1.3.2-1.el7
[2024-10-31 21:09:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-10-31 21:09:48] c-212-7.aglt2.org
[2024-10-31 21:09:48] apptainer works
[2024-10-31 21:09:48] Set ATHENA_PROC_NUMBER=8
[2024-10-31 21:09:48] Set ATHENA_CORE_NUMBER=8
[2024-10-31 21:09:48] Starting ATLAS job with PandaID=6384794630
[2024-10-31 21:09:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh

</stderr_txt>
]]>

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