Stderr output

<core_client_version>8.0.3</core_client_version>
<![CDATA[
<stderr_txt>
2024-10-31 04:43:31 (6648): Detected: vboxwrapper 26206
2024-10-31 04:43:31 (6648): Detected: BOINC client v8.0.3
2024-10-31 04:43:32 (6648): Detected: VirtualBox VboxManage Interface (Version: 7.1.0)
2024-10-31 04:43:32 (6648): Successfully copied 'init_data.xml' to the shared directory.
2024-10-31 04:43:33 (6648): Create VM. (boinc_0bcc0b459b44efe1, slot#40)
2024-10-31 04:43:34 (6648): Setting Memory Size for VM. (4400MB)
2024-10-31 04:43:35 (6648): Setting CPU Count for VM. (4)
2024-10-31 04:43:35 (6648): Setting Chipset Options for VM.
2024-10-31 04:43:36 (6648): Setting Graphics Controller Options for VM.
2024-10-31 04:43:36 (6648): Setting Boot Options for VM.
2024-10-31 04:43:37 (6648): Setting Network Configuration for NAT.
2024-10-31 04:43:37 (6648): Enabling VM Network Access.
2024-10-31 04:43:38 (6648): Disabling USB Support for VM.
2024-10-31 04:43:38 (6648): Disabling COM Port Support for VM.
2024-10-31 04:43:39 (6648): Disabling LPT Port Support for VM.
2024-10-31 04:43:39 (6648): Disabling Audio Support for VM.
2024-10-31 04:43:40 (6648): Disabling Clipboard Support for VM.
2024-10-31 04:43:40 (6648): Disabling Drag and Drop Support for VM.
2024-10-31 04:43:41 (6648): Adding storage controller(s) to VM.
2024-10-31 04:43:41 (6648): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-10-31 04:43:42 (6648): Adding VirtualBox Guest Additions to VM.
2024-10-31 04:43:43 (6648): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-10-31 04:43:44 (6648): forwarding host port 59335 to guest port 80
2024-10-31 04:43:44 (6648): Enabling remote desktop for VM.
2024-10-31 04:43:45 (6648): Enabling shared directory for VM.
2024-10-31 04:43:46 (6648): Starting VM using VBoxManage interface. (boinc_0bcc0b459b44efe1, slot#40)
2024-10-31 04:43:57 (6648): Successfully started VM. (PID = '1140')
2024-10-31 04:43:57 (6648): Reporting VM Process ID to BOINC.
2024-10-31 04:43:57 (6648): Guest Log: BIOS: VirtualBox 7.1.0
2024-10-31 04:43:57 (6648): Guest Log: CPUID EDX: 0x178bfbff
2024-10-31 04:43:57 (6648): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-10-31 04:43:57 (6648): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-10-31 04:43:57 (6648): VM state change detected. (old = 'poweredoff', new = 'running')
2024-10-31 04:43:57 (6648): Detected: Web Application Enabled (http://localhost:59335)
2024-10-31 04:43:57 (6648): Detected: Remote Desktop Enabled (localhost:59337)
2024-10-31 04:43:57 (6648): Preference change detected
2024-10-31 04:43:57 (6648): Setting CPU throttle for VM. (100%)
2024-10-31 04:43:57 (6648): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-10-31 04:43:59 (6648): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-10-31 04:43:59 (6648): Guest Log: BIOS: Booting from Hard Disk...
2024-10-31 04:44:03 (6648): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-10-31 04:44:03 (6648): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-10-31 04:44:03 (6648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-10-31 04:44:03 (6648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-10-31 04:44:03 (6648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-10-31 04:44:03 (6648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-10-31 04:44:03 (6648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-10-31 04:44:03 (6648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-10-31 04:44:03 (6648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-10-31 04:44:03 (6648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-10-31 04:44:03 (6648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-10-31 04:44:03 (6648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-10-31 04:44:03 (6648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-10-31 04:44:03 (6648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-10-31 04:44:03 (6648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-10-31 04:44:03 (6648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-10-31 04:44:03 (6648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-10-31 04:44:03 (6648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-10-31 04:44:03 (6648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-10-31 04:44:03 (6648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-10-31 04:44:03 (6648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-10-31 04:44:03 (6648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-10-31 04:44:03 (6648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-10-31 04:44:03 (6648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-10-31 04:44:03 (6648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-10-31 04:44:03 (6648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-10-31 04:44:03 (6648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-10-31 04:44:03 (6648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-10-31 04:44:03 (6648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-10-31 04:44:03 (6648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-10-31 04:44:03 (6648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-10-31 04:44:03 (6648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-10-31 04:44:13 (6648): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-10-31 04:44:13 (6648): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-10-31 04:44:35 (6648): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-10-31 04:44:35 (6648): Guest Log: 00:00:00.001642 main     Log opened 2024-10-31T04:44:33.537728000Z
2024-10-31 04:44:35 (6648): Guest Log: 00:00:00.002030 main     OS Product: Linux
2024-10-31 04:44:35 (6648): Guest Log: 00:00:00.002084 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-10-31 04:44:35 (6648): Guest Log: 00:00:00.002134 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-10-31 04:44:35 (6648): Guest Log: 00:00:00.002185 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-10-31 04:44:35 (6648): Guest Log: 00:00:00.002185 main     Process ID: 1315
2024-10-31 04:44:35 (6648): Guest Log: 00:00:00.002186 main     Package type: LINUX_64BITS_GENERIC
2024-10-31 04:44:35 (6648): Guest Log: 00:00:00.009561 main     5.2.32 r132073 started. Verbose level = 0
2024-10-31 04:44:36 (6648): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-10-31 04:44:36 (6648): Guest Log: [INFO] Mounting shared directory
2024-10-31 04:44:36 (6648): Guest Log: [INFO] Checking for init_data.xml
2024-10-31 04:44:45 (6648): Guest Log: 00:00:10.018312 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 635 628 000ns (GuestNow=1 730 342 684 917 780 000 ns GuestLast=1 730 349 873 553 408 000 ns fSetTimeLastLoop=true )
2024-10-31 04:44:54 (6648): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-10-31 04:44:54 (6648): Guest Log: [INFO] Detected branch: prod
2024-10-31 04:44:56 (6648): Guest Log: This is the prod version of the ATLAS job wrapper
2024-10-31 04:44:56 (6648): Guest Log: Copying input files
2024-10-31 04:45:08 (6648): Guest Log: Copied input files into RunAtlas.
2024-10-31 04:45:09 (6648): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-10-31 04:45:09 (6648): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-10-31 04:45:09 (6648): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-10-31 04:45:09 (6648): Guest Log: Further information can be found at the LHC@home message board.
2024-10-31 04:45:28 (6648): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-10-31 04:45:31 (6648): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-10-31 04:45:31 (6648): Guest Log: 2.6.3.0 1597 0 30168 138924 3 1 3117399 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-10-31 04:45:33 (6648): Guest Log: copied the webapp to /var/www
2024-10-31 04:45:33 (6648): Guest Log: ATHENA_PROC_NUMBER=4
2024-10-31 04:45:33 (6648): Guest Log: ATHENA_CORE_NUMBER=4
2024-10-31 04:45:36 (6648): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-10-31 04:45:36 (6648): Guest Log:  *** Starting ATLAS job. (PandaID=6384148552 taskID=41843667) ***
2024-10-31 06:23:57 (6648): Status Report: Elapsed Time: '6000.000000'
2024-10-31 06:23:57 (6648): Status Report: CPU Time: '2774.281250'
2024-10-31 08:00:05 (6648): VM state change detected. (old = 'running', new = 'paused')
2024-10-31 10:00:04 (6648): VM state change detected. (old = 'paused', new = 'running')
2024-10-31 10:00:12 (6648): Guest Log: 03:15:37.870507 timesync vgsvcTimeSyncWorker: Radical host time change: 7 208 578 000 000ns (HostNow=1 730 361 611 349 000 000 ns HostLast=1 730 354 402 771 000 000 ns)
2024-10-31 10:00:22 (6648): Guest Log: 03:15:47.872293 timesync vgsvcTimeSyncWorker: Radical guest time change: 7 208 581 291 000ns (GuestNow=1 730 361 621 350 854 000 ns GuestLast=1 730 354 412 769 563 000 ns fSetTimeLastLoop=true )
2024-10-31 10:03:57 (6648): Status Report: Elapsed Time: '12000.000000'
2024-10-31 10:03:57 (6648): Status Report: CPU Time: '12563.609375'
2024-10-31 11:13:37 (6648): Guest Log:  *** Job finished ***
2024-10-31 11:13:37 (6648): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-10-31 11:13:37 (6648): Guest Log: 2024-10-31 09:13:26,278 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2024-10-31 11:13:37 (6648): Guest Log: 2024-10-31 09:13:27,280 | INFO     | [job] queue monitor thread has finished
2024-10-31 11:13:37 (6648): Guest Log: 2024-10-31 09:13:28,023 | INFO     | [data] queue_monitor thread has finished
2024-10-31 11:13:37 (6648): Guest Log: 2024-10-31 09:13:29,286 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139865023682368)>', '<ExcThread(monitor, started 139864578180864)>']
2024-10-31 11:13:37 (6648): Guest Log: 2024-10-31 09:13:29,669 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-10-31 11:13:37 (6648): Guest Log: 2024-10-31 09:13:29,669 | INFO     | [monitor] control thread has ended
2024-10-31 11:13:37 (6648): Guest Log: 2024-10-31 09:13:34,298 | INFO     | all workflow threads have been joined
2024-10-31 11:13:37 (6648): Guest Log: 2024-10-31 09:13:34,298 | INFO     | end of generic workflow (traces error code: 0)
2024-10-31 11:13:37 (6648): Guest Log: 2024-10-31 09:13:34,299 | INFO     | traces error code: 0
2024-10-31 11:13:37 (6648): Guest Log: 2024-10-31 09:13:34,299 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-10-31 11:13:37 (6648): Guest Log: 2024-10-31 09:13:34,448 [wrapper] ==== pilot stdout END ====
2024-10-31 11:13:37 (6648): Guest Log: 2024-10-31 09:13:34,456 [wrapper] ==== wrapper stdout RESUME ====
2024-10-31 11:13:37 (6648): Guest Log: 2024-10-31 09:13:34,463 [wrapper] pilotpid: 6205
2024-10-31 11:13:37 (6648): Guest Log: 2024-10-31 09:13:34,471 [wrapper] Pilot exit status: 0
2024-10-31 11:13:37 (6648): Guest Log: 2024-10-31 09:13:34,508 [wrapper] pandaids: 6384148552
2024-10-31 11:13:37 (6648): Guest Log: 2024-10-31 09:13:34,598 [wrapper] cleanup supervisor_pilot 25156 6206
2024-10-31 11:13:37 (6648): Guest Log: 2024-10-31 09:13:34,610 [wrapper] Test setup, not cleaning
2024-10-31 11:13:37 (6648): Guest Log: 2024-10-31 09:13:34,618 [wrapper] ==== wrapper stdout END ====
2024-10-31 11:13:37 (6648): Guest Log: 2024-10-31 09:13:34,638 [wrapper] ==== wrapper stderr END ====
2024-10-31 11:13:37 (6648): Guest Log: 2024-10-31 09:13:34,655 [wrapper] apfmon messages muted
2024-10-31 11:13:37 (6648): Guest Log:  *** Error codes and diagnostics ***
2024-10-31 11:13:37 (6648): Guest Log:     "exeErrorCode": 0,
2024-10-31 11:13:37 (6648): Guest Log:     "exeErrorDiag": "",
2024-10-31 11:13:37 (6648): Guest Log:     "pilotErrorCode": 0,
2024-10-31 11:13:37 (6648): Guest Log:     "pilotErrorDiag": "",
2024-10-31 11:13:37 (6648): Guest Log:  *** Listing of results directory ***
2024-10-31 11:13:37 (6648): Guest Log: total 54984
2024-10-31 11:13:37 (6648): Guest Log: -rw-r--r--. 1 atlas atlas   486088 Oct 30 21:16 pilot3.tar.gz
2024-10-31 11:13:37 (6648): Guest Log: -rwx------. 1 atlas atlas    34589 Oct 30 21:23 runpilot2-wrapper.sh
2024-10-31 11:13:37 (6648): Guest Log: -rw-r--r--. 1 atlas atlas     5652 Oct 30 21:23 queuedata.json
2024-10-31 11:13:37 (6648): Guest Log: -rwxr-xr-x. 1 atlas atlas     9182 Oct 31 02:45 init_data.xml
2024-10-31 11:13:37 (6648): Guest Log: -rwxr-xr-x. 1 atlas atlas   499922 Oct 31 02:45 input.tar.gz
2024-10-31 11:13:37 (6648): Guest Log: -rwxr-xr-x. 1 atlas atlas    17569 Oct 31 02:45 start_atlas.sh
2024-10-31 11:13:37 (6648): Guest Log: lrwxrwxrwx. 1 atlas atlas       20 Oct 31 02:45 EVNT.41780183._000015.pool.root.1 -> /data/./ATLAS.root_0
2024-10-31 11:13:37 (6648): Guest Log: -rw-r--r--. 1 atlas atlas     2890 Oct 31 02:45 pandaJob.out
2024-10-31 11:13:37 (6648): Guest Log: -rw-------. 1 atlas atlas      424 Oct 31 02:49 setup.sh.local
2024-10-31 11:13:37 (6648): Guest Log: -rw-------. 1 atlas atlas  1030026 Oct 31 03:06 agis_schedconf.cvmfs.json
2024-10-31 11:13:37 (6648): Guest Log: drwx------. 4 atlas atlas     4096 Oct 31 03:06 pilot3
2024-10-31 11:13:37 (6648): Guest Log: -rw-------. 1 atlas atlas 48195685 Oct 31 09:12 HITS.41843667._016207.pool.root.1
2024-10-31 11:13:37 (6648): Guest Log: -rw-------. 1 atlas atlas     1038 Oct 31 09:12 memory_monitor_summary.json
2024-10-31 11:13:37 (6648): Guest Log: -rw-------. 1 atlas atlas       97 Oct 31 09:12 pilot_heartbeat.json
2024-10-31 11:13:37 (6648): Guest Log: -rw-------. 1 atlas atlas  1611897 Oct 31 09:12 agis_ddmendpoints.agis.ALL.json
2024-10-31 11:13:37 (6648): Guest Log: -rw-------. 1 atlas atlas   872069 Oct 31 09:12 log.41843667._016207.job.log.tgz.1
2024-10-31 11:13:37 (6648): Guest Log: -rw-------. 1 atlas atlas     8567 Oct 31 09:13 heartbeat.json
2024-10-31 11:13:37 (6648): Guest Log: -rw-------. 1 atlas atlas     4461 Oct 31 09:13 pilotlog.txt
2024-10-31 11:13:37 (6648): Guest Log: -rw-------. 1 atlas atlas  1276179 Oct 31 09:13 log.41843667._016207.job.log.1
2024-10-31 11:13:37 (6648): Guest Log: -rw-------. 1 atlas atlas      353 Oct 31 09:13 output.list
2024-10-31 11:13:37 (6648): Guest Log: -rw-r--r--. 1 atlas atlas      620 Oct 31 09:13 runtime_log
2024-10-31 11:13:37 (6648): Guest Log: -rw-------. 1 atlas atlas  2170880 Oct 31 09:13 result.tar.gz
2024-10-31 11:13:37 (6648): Guest Log: -rw-r--r--. 1 atlas atlas    10914 Oct 31 09:13 runtime_log.err
2024-10-31 11:13:37 (6648): Guest Log: -rw-------. 1 atlas atlas      652 Oct 31 09:13 eWeKDmyKVQ6n9Rq4apOajLDm4fhM0noT9bVorHsSDmkDULDmkOyoXm.diag
2024-10-31 11:13:37 (6648): Guest Log: Looking for outputfile HITS.41843667._016207.pool.root.1
2024-10-31 11:13:37 (6648): Guest Log: HITS file was successfully produced
2024-10-31 11:13:37 (6648): Guest Log: -rw-------. 1 atlas atlas 48195685 Oct 31 09:12 /home/atlas/RunAtlas/HITS.41843667._016207.pool.root.1
2024-10-31 11:13:37 (6648): Guest Log: Successfully finished the ATLAS job!
2024-10-31 11:13:37 (6648): Guest Log: Copying the results back to the shared directory!
2024-10-31 11:13:37 (6648): Guest Log:  *** Contents of shared directory: ***
2024-10-31 11:13:38 (6648): Guest Log: total 411684
2024-10-31 11:13:38 (6648): Guest Log: -rwxrwxrwx. 1 root root 370655751 Oct 31 02:43 ATLAS.root_0
2024-10-31 11:13:38 (6648): Guest Log: -rwxrwxrwx. 1 root root  48195685 Oct 31  2024 HITS.pool.root.1
2024-10-31 11:13:38 (6648): Guest Log: -rwxrwxrwx. 1 root root      9182 Oct 31 02:43 init_data.xml
2024-10-31 11:13:38 (6648): Guest Log: -rwxrwxrwx. 1 root root    499922 Oct 30 21:54 input.tar.gz
2024-10-31 11:13:38 (6648): Guest Log: -rwxrwxrwx. 1 root root   2170880 Oct 31  2024 result.tar.gz
2024-10-31 11:13:38 (6648): Guest Log: -rwxrwxrwx. 1 root root     17569 Oct 30 21:54 start_atlas.sh
2024-10-31 11:13:38 (6648): Guest Log:  *** Success! Shutting down the machine. ***
2024-10-31 11:13:38 (6648): VM Completion File Detected.
2024-10-31 11:13:38 (6648): Powering off VM.
2024-10-31 11:13:39 (6648): Successfully stopped VM.
2024-10-31 11:13:39 (6648): Deregistering VM. (boinc_0bcc0b459b44efe1, slot#40)
2024-10-31 11:13:39 (6648): Removing network bandwidth throttle group from VM.
2024-10-31 11:13:39 (6648): Removing VM from VirtualBox.
11:13:44 (6648): called boinc_finish(0)

</stderr_txt>
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