| Name | wmBODmbHMQ6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmc5FMDm5HJCOo_0 |
| Workunit | 226595420 |
| Created | 30 Oct 2024, 11:43:17 UTC |
| Sent | 30 Oct 2024, 12:20:52 UTC |
| Report deadline | 7 Nov 2024, 12:20:52 UTC |
| Received | 30 Oct 2024, 12:38:01 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 0 (0x00000000) |
| Computer ID | 10673194 |
| Run time | 12 min 18 sec |
| CPU time | 1 min 11 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 34.26 GFLOPS |
| Application version | ATLAS Simulation v3.01 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 794.59 MB |
| Peak swap size | 30.41 GB |
| Peak disk usage | 688.68 MB |
Stderr output
<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:21:16 (19116): wrapper (7.7.26015): starting
08:21:16 (19116): wrapper: running run_atlas (--nthreads 8)
[2024-10-30 08:21:16] Arguments: --nthreads 8
[2024-10-30 08:21:16] Threads: 8
[2024-10-30 08:21:16] Checking for CVMFS
[2024-10-30 08:21:16] Probing /cvmfs/atlas.cern.ch... OK
[2024-10-30 08:21:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-10-30 08:21:16] Running cvmfs_config stat atlas.cern.ch
[2024-10-30 08:21:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-10-30 08:21:16] 2.11.2.0 145030 1770 139492 138901 3 307 15143784 18432001 34229 130560 0 16129018 98.818 36524134 40398 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2024-10-30 08:21:16] CVMFS is ok
[2024-10-30 08:21:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-10-30 08:21:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-10-30 08:21:16] Further information can be found at the LHC@home message board.
[2024-10-30 08:21:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-10-30 08:21:16] Checking for apptainer binary...
[2024-10-30 08:21:16] Using apptainer found in PATH at /usr/bin/apptainer
[2024-10-30 08:21:16] Running /usr/bin/apptainer --version
[2024-10-30 08:21:16] apptainer version 1.3.2-1.el7
[2024-10-30 08:21:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-10-30 08:21:17] c-211-35-1.aglt2.org
[2024-10-30 08:21:17] apptainer works
[2024-10-30 08:21:17] Set ATHENA_PROC_NUMBER=8
[2024-10-30 08:21:17] Set ATHENA_CORE_NUMBER=8
[2024-10-30 08:21:17] Starting ATLAS job with PandaID=6383587608
[2024-10-30 08:21:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-10-30 08:33:30] *** The last 200 lines of the pilot log: ***
[2024-10-30 08:33:30] setting graceful stop in 10 s since there is no point in continuing
[2024-10-30 08:33:30] 2024-10-30 12:31:08,817 | WARNING | thread 'copytool_out' received an exception from bucket: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-10-30 08:33:30] 2024-10-30 12:31:12,265 | WARNING | Exception caught: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-10-30 08:33:30] 2024-10-30 12:31:12,266 | WARNING | Traceback (most recent call last):
[2024-10-30 08:33:30] File "/tmp/boinchome/slots/0/pilot3/pilot/util/monitoring.py", line 109, in job_monitor_tasks
[2024-10-30 08:33:30] cpuconsumptiontime = get_current_cpu_consumption_time(job.pid)
[2024-10-30 08:33:30] File "/tmp/boinchome/slots/0/pilot3/pilot/util/processes.py", line 600, in get_current_cpu_consumption_time
[2024-10-30 08:33:30] _, ps_cache, _ = execute("ps -eo pid,ppid -m", mute=True, timeout=60)
[2024-10-30 08:33:30] File "/tmp/boinchome/slots/0/pilot3/pilot/util/container.py", line 98, in execute
[2024-10-30 08:33:30] process = subprocess.Popen(exe,
[2024-10-30 08:33:30] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-10-30 08:33:30] self._execute_child(args, executable, preexec_fn, close_fds,
[2024-10-30 08:33:30] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-10-30 08:33:30] raise child_exception_type(errno_num, err_msg, err_filename)
[2024-10-30 08:33:30] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-10-30 08:33:30]
[2024-10-30 08:33:30] 2024-10-30 12:31:12,266 | WARNING | will send preliminary diagnostics (and pretend job is still running)=Exception caught: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-10-30 08:33:30] 2024-10-30 12:31:12,266 | INFO | pilot will not update the server (heartbeat message will be written to file)
[2024-10-30 08:33:30] 2024-10-30 12:31:12,266 | INFO | log transfer has not been attempted: IN_PROGRESS
[2024-10-30 08:33:30] 2024-10-30 12:31:12,266 | INFO | job 6383587608 has state 'running' - writing heartbeat
[2024-10-30 08:33:30] 2024-10-30 12:31:12,267 | INFO | payload/TRF did not report the number of read events
[2024-10-30 08:33:30] 2024-10-30 12:31:12,271 | INFO | executing command: lscpu
[2024-10-30 08:33:30] 2024-10-30 12:31:12,284 | WARNING | exception caught: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-10-30 08:33:30] 2024-10-30 12:31:14,790 | INFO | monitor loop #52: job 0:6383587608 is in state 'failed'
[2024-10-30 08:33:30] 2024-10-30 12:31:14,790 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2024-10-30 08:33:30] 2024-10-30 12:31:17,295 | INFO | monitor loop #53: job 0:6383587608 is in state 'failed'
[2024-10-30 08:33:30] 2024-10-30 12:31:17,295 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2024-10-30 08:33:30] 2024-10-30 12:31:18,547 | WARNING | job:job_monitor:received graceful stop - abort after this iteration
[2024-10-30 08:33:30] 2024-10-30 12:31:18,547 | INFO | aborting loop
[2024-10-30 08:33:30] 2024-10-30 12:31:18,548 | WARNING | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-10-30 08:33:30] 2024-10-30 12:31:18,548 | WARNING | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-10-30 08:33:30] 2024-10-30 12:31:18,548 | INFO | found 1 job(s) in 20 queues
[2024-10-30 08:33:30] 2024-10-30 12:31:18,549 | INFO | aborting job 6383587608
[2024-10-30 08:33:30] 2024-10-30 12:31:18,549 | WARNING | could not find signal name for signal number None - using SIGTERM
[2024-10-30 08:33:30] 2024-10-30 12:31:18,567 | INFO | all data control threads have been joined
[2024-10-30 08:33:30] 2024-10-30 12:31:18,631 | WARNING | pilot monitor received instruction that args.graceful_stop has been set
[2024-10-30 08:33:30] 2024-10-30 12:31:18,631 | WARNING | will wait for a maximum of 300 s for threads to finish
[2024-10-30 08:33:30] 2024-10-30 12:31:18,631 | INFO | job 6383587608 has state=failed
[2024-10-30 08:33:30] 2024-10-30 12:31:18,631 | INFO | preparing for final server update for job 6383587608 in state='failed'
[2024-10-30 08:33:30] 2024-10-30 12:31:18,701 | INFO | all payload control threads have been joined
[2024-10-30 08:33:30] 2024-10-30 12:31:18,771 | INFO | all job control threads have been joined
[2024-10-30 08:33:30] 2024-10-30 12:31:19,552 | INFO | [job] job monitor thread has finished
[2024-10-30 08:33:30] 2024-10-30 12:31:19,584 | INFO | [data] control thread has finished
[2024-10-30 08:33:30] 2024-10-30 12:31:19,636 | WARNING | job_aborted has been set - aborting pilot monitoring
[2024-10-30 08:33:30] 2024-10-30 12:31:19,636 | INFO | [monitor] control thread has ended
[2024-10-30 08:33:30] 2024-10-30 12:31:19,667 | INFO | [payload] run_realtimelog thread has finished
[2024-10-30 08:33:30] 2024-10-30 12:31:19,707 | INFO | [payload] control thread has finished
[2024-10-30 08:33:30] 2024-10-30 12:31:19,717 | INFO | [data] copytool_in thread has finished
[2024-10-30 08:33:30] 2024-10-30 12:31:19,764 | INFO | [payload] validate_post thread has finished
[2024-10-30 08:33:30] 2024-10-30 12:31:19,777 | INFO | [job] control thread has finished
[2024-10-30 08:33:30] 2024-10-30 12:31:20,170 | INFO | [job] retrieve thread has finished
[2024-10-30 08:33:30] 2024-10-30 12:31:20,273 | INFO | [job] validate thread has finished
[2024-10-30 08:33:30] 2024-10-30 12:31:20,532 | INFO | [job] create_data_payload thread has finished
[2024-10-30 08:33:30] 2024-10-30 12:31:20,581 | INFO | [payload] failed_post thread has finished
[2024-10-30 08:33:30] 2024-10-30 12:31:20,855 | INFO | [payload] validate_pre thread has finished
[2024-10-30 08:33:30] 2024-10-30 12:31:22,555 | INFO | [data] queue_monitor thread has finished
[2024-10-30 08:33:30] 2024-10-30 12:31:24,373 | INFO | [payload] execute_payloads thread has finished
[2024-10-30 08:33:30] 2024-10-30 12:31:25,669 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:31:27,679 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:31:29,691 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:31:31,701 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:31:33,711 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:31:35,721 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:31:37,733 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:31:39,744 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:31:41,754 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:31:43,764 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:31:45,774 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:31:47,784 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:31:49,794 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:31:51,806 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:31:53,817 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:31:55,828 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:31:57,839 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:31:59,850 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:32:01,861 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:32:03,873 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:32:05,884 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:32:07,894 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:32:09,905 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:32:11,915 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:32:13,928 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:32:15,938 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:32:17,949 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:32:19,959 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:32:21,970 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:32:23,980 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:32:25,991 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:32:28,002 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:32:30,013 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:32:32,023 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:32:34,034 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:32:36,045 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:32:38,055 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:32:40,065 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:32:42,075 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:32:44,085 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:32:46,097 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:32:48,109 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:32:50,121 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:32:52,131 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:32:54,141 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:32:56,149 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:32:58,161 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:33:00,171 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:33:02,181 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:33:04,193 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:33:06,203 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:33:08,211 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:33:10,221 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:33:12,232 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:33:13,677 | INFO | proceeding with final server update
[2024-10-30 08:33:30] 2024-10-30 12:33:13,677 | INFO | this job has now completed (state=failed)
[2024-10-30 08:33:30] 2024-10-30 12:33:13,678 | INFO | pilot will not update the server (heartbeat message will be written to file)
[2024-10-30 08:33:30] 2024-10-30 12:33:13,678 | INFO | log transfer has not been attempted: IN_PROGRESS
[2024-10-30 08:33:30] 2024-10-30 12:33:13,678 | INFO | job 6383587608 has state 'failed' - writing heartbeat
[2024-10-30 08:33:30] 2024-10-30 12:33:13,678 | INFO | payload/TRF did not report the number of read events
[2024-10-30 08:33:30] 2024-10-30 12:33:13,683 | INFO | executing command: lscpu
[2024-10-30 08:33:30] File "/tmp/boinchome/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2024-10-30 08:33:30] self._target(**self.kwargs)
[2024-10-30 08:33:30] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 2638, in queue_monitor
[2024-10-30 08:33:30] update_server(job, args)
[2024-10-30 08:33:30] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 2687, in update_server
[2024-10-30 08:33:30] send_state(job, args, job.state, metadata=metadata)
[2024-10-30 08:33:30] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 430, in send_state
[2024-10-30 08:33:30] data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2024-10-30 08:33:30] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 757, in get_data_structure
[2024-10-30 08:33:30] cpumodel = get_cpu_cores(cpumodel) # add the CPU cores if not present
[2024-10-30 08:33:30] File "/tmp/boinchome/slots/0/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores
[2024-10-30 08:33:30] ec, stdout = lscpu()
[2024-10-30 08:33:30] File "/tmp/boinchome/slots/0/pilot3/pilot/util/workernode.py", line 333, in lscpu
[2024-10-30 08:33:30] ec, stdout, _ = execute(cmd)
[2024-10-30 08:33:30] File "/tmp/boinchome/slots/0/pilot3/pilot/util/container.py", line 98, in execute
[2024-10-30 08:33:30] process = subprocess.Popen(exe,
[2024-10-30 08:33:30] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-10-30 08:33:30] self._execute_child(args, executable, preexec_fn, close_fds,
[2024-10-30 08:33:30] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-10-30 08:33:30] raise child_exception_type(errno_num, err_msg, err_filename)
[2024-10-30 08:33:30] unexpected exception caught by thread run() function: (<class 'OSError'>, OSError(107, 'Transport endpoint is not connected'), <traceback object at 0x7f2b20303fc0>)
[2024-10-30 08:33:30] Traceback (most recent call last):
[2024-10-30 08:33:30] File "/tmp/boinchome/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2024-10-30 08:33:30] self._target(**self.kwargs)
[2024-10-30 08:33:30] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 2638, in queue_monitor
[2024-10-30 08:33:30] update_server(job, args)
[2024-10-30 08:33:30] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 2687, in update_server
[2024-10-30 08:33:30] send_state(job, args, job.state, metadata=metadata)
[2024-10-30 08:33:30] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 430, in send_state
[2024-10-30 08:33:30] data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2024-10-30 08:33:30] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 757, in get_data_structure
[2024-10-30 08:33:30] cpumodel = get_cpu_cores(cpumodel) # add the CPU cores if not present
[2024-10-30 08:33:30] File "/tmp/boinchome/slots/0/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores
[2024-10-30 08:33:30] ec, stdout = lscpu()
[2024-10-30 08:33:30] File "/tmp/boinchome/slots/0/pilot3/pilot/util/workernode.py", line 333, in lscpu
[2024-10-30 08:33:30] ec, stdout, _ = execute(cmd)
[2024-10-30 08:33:30] File "/tmp/boinchome/slots/0/pilot3/pilot/util/container.py", line 98, in execute
[2024-10-30 08:33:30] process = subprocess.Popen(exe,
[2024-10-30 08:33:30] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-10-30 08:33:30] self._execute_child(args, executable, preexec_fn, close_fds,
[2024-10-30 08:33:30] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-10-30 08:33:30] raise child_exception_type(errno_num, err_msg, err_filename)
[2024-10-30 08:33:30] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-10-30 08:33:30]
[2024-10-30 08:33:30] None
[2024-10-30 08:33:30] exception has been put in bucket queue belonging to thread 'queue_monitor'
[2024-10-30 08:33:30] setting graceful stop in 10 s since there is no point in continuing
[2024-10-30 08:33:30] 2024-10-30 12:33:14,242 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:33:16,252 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:33:18,263 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:33:20,273 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:33:22,283 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139823494403904)>', '<ExcThread(queue_monitor, started 139822920361728)>']
[2024-10-30 08:33:30] 2024-10-30 12:33:24,293 | INFO | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 139823494403904)>'])
[2024-10-30 08:33:30] 2024-10-30 12:33:29,319 | INFO | all workflow threads have been joined
[2024-10-30 08:33:30] 2024-10-30 12:33:29,319 | INFO | end of generic workflow (traces error code: 0)
[2024-10-30 08:33:30] 2024-10-30 12:33:29,320 | INFO | traces error code: 0
[2024-10-30 08:33:30] 2024-10-30 12:33:29,320 | INFO | pilot has finished (exit code=0, shell exit code=0)
[2024-10-30 08:33:30] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-30 08:33:30] ==== pilot stdout END ====
[2024-10-30 08:33:30] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-30 08:33:30] ==== wrapper stdout RESUME ====
[2024-10-30 08:33:30] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-30 08:33:30] pilotpid: 33136
[2024-10-30 08:33:30] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-30 08:33:30] Pilot exit status: 0
[2024-10-30 08:33:30] ./runpilot2-wrapper.sh: line 981: /usr/bin/cat: Transport endpoint is not connected
[2024-10-30 08:33:30] ./runpilot2-wrapper.sh: line 981: /usr/bin/xargs: Transport endpoint is not connected
[2024-10-30 08:33:30] ./runpilot2-wrapper.sh: line 981: /usr/bin/cut: Transport endpoint is not connected
[2024-10-30 08:33:30] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-30 08:33:30] pandaids:
[2024-10-30 08:33:30] ./runpilot2-wrapper.sh: line 511: /usr/bin/ps: Transport endpoint is not connected
[2024-10-30 08:33:30] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-30 08:33:30] No supervise_pilot CHILD process found
[2024-10-30 08:33:30] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-30 08:33:30] Test setup, not cleaning
[2024-10-30 08:33:30] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-30 08:33:30] ==== wrapper stdout END ====
[2024-10-30 08:33:30] ./runpilot2-wrapper.sh: line 10: /usr/bin/date: Transport endpoint is not connected
[2024-10-30 08:33:30] ==== wrapper stderr END ====
[2024-10-30 08:33:30] ./runpilot2-wrapper.sh: line 532: /usr/bin/date: Transport endpoint is not connected
[2024-10-30 08:33:30] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-30 08:33:30] apfmon messages muted
[2024-10-30 08:33:30] *** Error codes and diagnostics ***
[2024-10-30 08:33:30] *** Listing of results directory ***
[2024-10-30 08:33:30] total 352700
[2024-10-30 08:33:30] -rw-r--r-- 1 boincer umatlas 486088 Oct 30 07:33 pilot3.tar.gz
[2024-10-30 08:33:30] -rw-r--r-- 1 boincer umatlas 5652 Oct 30 07:43 queuedata.json
[2024-10-30 08:33:30] -rwx------ 1 boincer umatlas 34589 Oct 30 07:43 runpilot2-wrapper.sh
[2024-10-30 08:33:30] -rw-r--r-- 1 boincer umatlas 100 Oct 30 08:21 wrapper_26015_x86_64-pc-linux-gnu
[2024-10-30 08:33:30] -rwxr-xr-x 1 boincer umatlas 7986 Oct 30 08:21 run_atlas
[2024-10-30 08:33:30] -rw-r--r-- 1 boincer umatlas 105 Oct 30 08:21 job.xml
[2024-10-30 08:33:30] -rw-r--r-- 2 boincer umatlas 357102268 Oct 30 08:21 EVNT.41780312._000014.pool.root.1
[2024-10-30 08:33:30] -rw-r--r-- 2 boincer umatlas 17569 Oct 30 08:21 start_atlas.sh
[2024-10-30 08:33:30] drwxrwx--x 2 boincer umatlas 4096 Oct 30 08:21 shared
[2024-10-30 08:33:30] -rw-r--r-- 2 boincer umatlas 499904 Oct 30 08:21 input.tar.gz
[2024-10-30 08:33:30] -rw-r--r-- 1 boincer umatlas 0 Oct 30 08:21 boinc_lockfile
[2024-10-30 08:33:30] -rw-r--r-- 1 boincer umatlas 2849 Oct 30 08:21 pandaJob.out
[2024-10-30 08:33:30] -rw------- 1 boincer umatlas 467 Oct 30 08:21 setup.sh.local
[2024-10-30 08:33:30] -rw------- 1 boincer umatlas 1027858 Oct 30 08:21 agis_schedconf.cvmfs.json
[2024-10-30 08:33:30] -rw------- 1 boincer umatlas 1611897 Oct 30 08:21 agis_ddmendpoints.agis.ALL.json
[2024-10-30 08:33:30] drwx------ 4 boincer umatlas 4096 Oct 30 08:21 pilot3
[2024-10-30 08:33:30] -rw------- 1 boincer umatlas 740 Oct 30 08:22 heartbeat.json
[2024-10-30 08:33:30] -rw-r--r-- 1 boincer umatlas 6380 Oct 30 08:28 init_data.xml
[2024-10-30 08:33:30] -rw------- 1 boincer umatlas 95 Oct 30 08:30 pilot_heartbeat.json
[2024-10-30 08:33:30] -rw-r--r-- 1 boincer umatlas 525 Oct 30 08:31 boinc_task_state.xml
[2024-10-30 08:33:30] -rw------- 1 boincer umatlas 1042 Oct 30 08:31 memory_monitor_summary.json
[2024-10-30 08:33:30] drwxrwx--- 2 boincer umatlas 4096 Oct 30 08:31 PanDA_Pilot-6383587608
[2024-10-30 08:33:30] -rw------- 1 boincer umatlas 99559 Oct 30 08:33 pilotlog.txt
[2024-10-30 08:33:30] -rw------- 1 boincer umatlas 121459 Oct 30 08:33 log.41843729._000682.job.log.1
[2024-10-30 08:33:30] -rw-r--r-- 1 boincer umatlas 428 Oct 30 08:33 runtime_log
[2024-10-30 08:33:30] -rw------- 1 boincer umatlas 628 Oct 30 08:33 wmBODmbHMQ6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmc5FMDm5HJCOo.diag
[2024-10-30 08:33:30] -rw-r--r-- 1 boincer umatlas 23 Oct 30 08:33 wrapper_checkpoint.txt
[2024-10-30 08:33:30] -rw-r--r-- 1 boincer umatlas 8192 Oct 30 08:33 boinc_mmap_file
[2024-10-30 08:33:30] -rw-r--r-- 1 boincer umatlas 11712 Oct 30 08:33 runtime_log.err
[2024-10-30 08:33:30] -rw-r--r-- 1 boincer umatlas 28058 Oct 30 08:33 stderr.txt
[2024-10-30 08:33:30] No HITS result produced
[2024-10-30 08:33:30] *** Contents of shared directory: ***
[2024-10-30 08:33:30] total 349252
[2024-10-30 08:33:30] -rw-r--r-- 2 boincer umatlas 357102268 Oct 30 08:21 ATLAS.root_0
[2024-10-30 08:33:30] -rw-r--r-- 2 boincer umatlas 17569 Oct 30 08:21 start_atlas.sh
[2024-10-30 08:33:30] -rw-r--r-- 2 boincer umatlas 499904 Oct 30 08:21 input.tar.gz
08:33:32 (19116): run_atlas exited; CPU time 71.269034
08:33:32 (19116): called boinc_finish(0)
</stderr_txt>
<message>
upload failure: <file_xfer_error>
<file_name>wmBODmbHMQ6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmc5FMDm5HJCOo_0_r1417821958_ATLAS_result</file_name>
<error_code>-161 (not found)</error_code>
</file_xfer_error>
</message>
]]>
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