Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2024-10-29 18:54:26 (1077339): Detected: vboxwrapper 26206
2024-10-29 18:54:26 (1077339): Detected: BOINC client v8.0.4
2024-10-29 18:54:26 (1077339): Detected: VirtualBox VboxManage Interface (Version: 7.1.0)
2024-10-29 18:54:26 (1077339): Successfully copied 'init_data.xml' to the shared directory.
2024-10-29 18:54:26 (1077339): Create VM. (boinc_934f929f4048ac25, slot#0)
2024-10-29 18:54:26 (1077339): Setting Memory Size for VM. (4600MB)
2024-10-29 18:54:27 (1077339): Setting CPU Count for VM. (6)
2024-10-29 18:54:27 (1077339): Setting Chipset Options for VM.
2024-10-29 18:54:27 (1077339): Setting Graphics Controller Options for VM.
2024-10-29 18:54:27 (1077339): Setting Boot Options for VM.
2024-10-29 18:54:27 (1077339): Setting Network Configuration for NAT.
2024-10-29 18:54:27 (1077339): Enabling VM Network Access.
2024-10-29 18:54:27 (1077339): Disabling USB Support for VM.
2024-10-29 18:54:28 (1077339): Disabling COM Port Support for VM.
2024-10-29 18:54:28 (1077339): Disabling LPT Port Support for VM.
2024-10-29 18:54:28 (1077339): Disabling Audio Support for VM.
2024-10-29 18:54:28 (1077339): Disabling Clipboard Support for VM.
2024-10-29 18:54:28 (1077339): Disabling Drag and Drop Support for VM.
2024-10-29 18:54:29 (1077339): Adding storage controller(s) to VM.
2024-10-29 18:54:29 (1077339): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-10-29 18:54:31 (1077339): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-10-29 18:54:31 (1077339): forwarding host port 59413 to guest port 80
2024-10-29 18:54:31 (1077339): Enabling remote desktop for VM.
2024-10-29 18:54:31 (1077339): Required extension pack not installed, remote desktop not enabled.
2024-10-29 18:54:31 (1077339): Enabling shared directory for VM.
2024-10-29 18:54:31 (1077339): Starting VM using VBoxManage interface. (boinc_934f929f4048ac25, slot#0)
2024-10-29 18:54:33 (1077339): Successfully started VM. (PID = '1077604')
2024-10-29 18:54:33 (1077339): Reporting VM Process ID to BOINC.
2024-10-29 18:54:33 (1077339): Guest Log: BIOS: VirtualBox 7.1.0
2024-10-29 18:54:33 (1077339): Guest Log: CPUID EDX: 0x178bfbff
2024-10-29 18:54:33 (1077339): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-10-29 18:54:33 (1077339): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-10-29 18:54:33 (1077339): VM state change detected. (old = 'poweredoff', new = 'running')
2024-10-29 18:54:33 (1077339): Detected: Web Application Enabled (http://localhost:59413)
2024-10-29 18:54:34 (1077339): VM state change detected. (old = 'running', new = 'paused')
2024-10-29 18:54:47 (1077339): Preference change detected
2024-10-29 18:54:47 (1077339): Setting CPU throttle for VM. (50%)
2024-10-29 18:54:48 (1077339): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-10-29 18:54:48 (1077339): VM state change detected. (old = 'paused', new = 'running')
2024-10-29 18:54:49 (1077339): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-10-29 18:54:49 (1077339): Guest Log: BIOS: Booting from Hard Disk...
2024-10-29 18:54:55 (1077339): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-10-29 18:54:55 (1077339): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-10-29 18:54:55 (1077339): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-10-29 18:54:55 (1077339): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-10-29 18:54:55 (1077339): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-10-29 18:54:55 (1077339): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-10-29 18:54:55 (1077339): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-10-29 18:54:55 (1077339): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-10-29 18:54:55 (1077339): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-10-29 18:54:55 (1077339): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-10-29 18:54:55 (1077339): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-10-29 18:54:55 (1077339): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-10-29 18:54:55 (1077339): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-10-29 18:54:55 (1077339): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-10-29 18:54:55 (1077339): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-10-29 18:54:55 (1077339): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-10-29 18:54:55 (1077339): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-10-29 18:54:55 (1077339): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-10-29 18:54:55 (1077339): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-10-29 18:54:55 (1077339): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-10-29 18:54:55 (1077339): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-10-29 18:54:55 (1077339): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-10-29 18:54:55 (1077339): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-10-29 18:54:55 (1077339): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-10-29 18:54:55 (1077339): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-10-29 18:54:55 (1077339): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-10-29 18:54:55 (1077339): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-10-29 18:54:55 (1077339): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-10-29 18:54:55 (1077339): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-10-29 18:54:55 (1077339): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-10-29 18:54:55 (1077339): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-10-29 18:54:55 (1077339): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-10-29 18:55:07 (1077339): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-10-29 18:55:07 (1077339): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-10-29 18:55:22 (1077339): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-10-29 18:55:22 (1077339): Guest Log: 00:00:00.000243 main     Log opened 2024-10-29T17:55:06.757432000Z
2024-10-29 18:55:22 (1077339): Guest Log: 00:00:00.000385 main     OS Product: Linux
2024-10-29 18:55:22 (1077339): Guest Log: 00:00:00.000465 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-10-29 18:55:22 (1077339): Guest Log: 00:00:00.000512 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-10-29 18:55:22 (1077339): Guest Log: 00:00:00.000551 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-10-29 18:55:22 (1077339): Guest Log: 00:00:00.000553 main     Process ID: 1356
2024-10-29 18:55:22 (1077339): Guest Log: 00:00:00.000554 main     Package type: LINUX_64BITS_GENERIC
2024-10-29 18:55:22 (1077339): Guest Log: 00:00:00.003559 main     5.2.32 r132073 started. Verbose level = 0
2024-10-29 18:55:23 (1077339): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-10-29 18:55:23 (1077339): Guest Log: [INFO] Mounting shared directory
2024-10-29 18:55:23 (1077339): Guest Log: [INFO] Checking for init_data.xml
2024-10-29 18:55:27 (1077339): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-10-29 18:55:27 (1077339): Guest Log: [INFO] Detected branch: prod
2024-10-29 18:55:27 (1077339): Guest Log: This is the prod version of the ATLAS job wrapper
2024-10-29 18:55:27 (1077339): Guest Log: Copying input files
2024-10-29 18:55:33 (1077339): Guest Log: Copied input files into RunAtlas.
2024-10-29 18:55:33 (1077339): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-10-29 18:55:33 (1077339): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-10-29 18:55:33 (1077339): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-10-29 18:55:33 (1077339): Guest Log: Further information can be found at the LHC@home message board.
2024-10-29 18:55:45 (1077339): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-10-29 18:55:45 (1077339): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-10-29 18:55:45 (1077339): Guest Log: 2.6.3.0 1633 0 30200 138871 4 1 3117399 4096000 0 65024 0 0 n/a 1 4 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
2024-10-29 18:55:48 (1077339): Guest Log: copied the webapp to /var/www
2024-10-29 18:55:48 (1077339): Guest Log: ATHENA_PROC_NUMBER=6
2024-10-29 18:55:48 (1077339): Guest Log: ATHENA_CORE_NUMBER=6
2024-10-29 18:55:49 (1077339): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-10-29 18:55:49 (1077339): Guest Log:  *** Starting ATLAS job. (PandaID=6382486769 taskID=41843680) ***
2024-10-29 20:33:48 (1077339): Status Report: Elapsed Time: '6000.000000'
2024-10-29 20:33:48 (1077339): Status Report: CPU Time: '12741.950000'
2024-10-29 21:40:44 (1077339): Guest Log:  *** Job finished ***
2024-10-29 21:40:44 (1077339): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-10-29 21:40:44 (1077339): Guest Log: 2024-10-29 20:40:19,493 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139664656004928)>', '<ExcThread(queue_monitor, started 139664363984640)>']
2024-10-29 21:40:44 (1077339): Guest Log: 2024-10-29 20:40:21,541 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139664656004928)>', '<ExcThread(queue_monitor, started 139664363984640)>']
2024-10-29 21:40:44 (1077339): Guest Log: 2024-10-29 20:40:23,561 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139664656004928)>', '<ExcThread(queue_monitor, started 139664363984640)>']
2024-10-29 21:40:44 (1077339): Guest Log: 2024-10-29 20:40:24,981 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139664656004928)>', '<ExcThread(queue_monitor, started 139664363984640)>']
2024-10-29 21:40:44 (1077339): Guest Log: 2024-10-29 20:40:24,982 | INFO     | [job] queue monitor thread has finished
2024-10-29 21:40:44 (1077339): Guest Log: 2024-10-29 20:40:25,611 | INFO     | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 139664656004928)>'])
2024-10-29 21:40:44 (1077339): Guest Log: 2024-10-29 20:40:30,664 | INFO     | all workflow threads have been joined
2024-10-29 21:40:44 (1077339): Guest Log: 2024-10-29 20:40:30,664 | INFO     | end of generic workflow (traces error code: 0)
2024-10-29 21:40:44 (1077339): Guest Log: 2024-10-29 20:40:30,665 | INFO     | traces error code: 0
2024-10-29 21:40:44 (1077339): Guest Log: 2024-10-29 20:40:30,666 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-10-29 21:40:44 (1077339): Guest Log: 2024-10-29 20:40:30,917 [wrapper] ==== pilot stdout END ====
2024-10-29 21:40:44 (1077339): Guest Log: 2024-10-29 20:40:30,922 [wrapper] ==== wrapper stdout RESUME ====
2024-10-29 21:40:44 (1077339): Guest Log: 2024-10-29 20:40:30,927 [wrapper] pilotpid: 5992
2024-10-29 21:40:44 (1077339): Guest Log: 2024-10-29 20:40:30,933 [wrapper] Pilot exit status: 0
2024-10-29 21:40:44 (1077339): Guest Log: 2024-10-29 20:40:31,018 [wrapper] pandaids: 6382486769
2024-10-29 21:40:44 (1077339): Guest Log: 2024-10-29 20:40:31,124 [wrapper] cleanup supervisor_pilot  8576 5993
2024-10-29 21:40:44 (1077339): Guest Log: 2024-10-29 20:40:31,142 [wrapper] Test setup, not cleaning
2024-10-29 21:40:44 (1077339): Guest Log: 2024-10-29 20:40:31,161 [wrapper] ==== wrapper stdout END ====
2024-10-29 21:40:44 (1077339): Guest Log: 2024-10-29 20:40:31,179 [wrapper] ==== wrapper stderr END ====
2024-10-29 21:40:44 (1077339): Guest Log: 2024-10-29 20:40:31,222 [wrapper] apfmon messages muted
2024-10-29 21:40:44 (1077339): Guest Log:  *** Error codes and diagnostics ***
2024-10-29 21:40:44 (1077339): Guest Log:  *** Listing of results directory ***
2024-10-29 21:40:44 (1077339): Guest Log: total 5324
2024-10-29 21:40:44 (1077339): Guest Log: -rw-r--r--. 1 atlas atlas  486088 Oct 29 12:48 pilot3.tar.gz
2024-10-29 21:40:44 (1077339): Guest Log: -rw-r--r--. 1 atlas atlas    5653 Oct 29 12:56 queuedata.json
2024-10-29 21:40:44 (1077339): Guest Log: -rwx------. 1 atlas atlas   34589 Oct 29 12:56 runpilot2-wrapper.sh
2024-10-29 21:40:44 (1077339): Guest Log: -rw-r--r--. 1 atlas atlas  499918 Oct 29 17:55 input.tar.gz
2024-10-29 21:40:44 (1077339): Guest Log: -rw-r--r--. 1 atlas atlas    6645 Oct 29 17:55 init_data.xml
2024-10-29 21:40:44 (1077339): Guest Log: -rw-r--r--. 1 atlas atlas   17569 Oct 29 17:55 start_atlas.sh
2024-10-29 21:40:44 (1077339): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Oct 29 17:55 EVNT.41780210._000006.pool.root.1 -> /data/./ATLAS.root_0
2024-10-29 21:40:44 (1077339): Guest Log: -rw-r--r--. 1 atlas atlas    2891 Oct 29 17:55 pandaJob.out
2024-10-29 21:40:44 (1077339): Guest Log: -rw-------. 1 atlas atlas     424 Oct 29 17:55 setup.sh.local
2024-10-29 21:40:44 (1077339): Guest Log: -rw-------. 1 atlas atlas 1029067 Oct 29 17:56 agis_schedconf.cvmfs.json
2024-10-29 21:40:44 (1077339): Guest Log: -rw-------. 1 atlas atlas 1611897 Oct 29 17:56 agis_ddmendpoints.agis.ALL.json
2024-10-29 21:40:44 (1077339): Guest Log: drwx------. 4 atlas atlas    4096 Oct 29 17:56 pilot3
2024-10-29 21:40:44 (1077339): Guest Log: -rw-------. 1 atlas atlas     912 Oct 29 20:32 heartbeat.json
2024-10-29 21:40:44 (1077339): Guest Log: -rw-------. 1 atlas atlas      95 Oct 29 20:39 pilot_heartbeat.json
2024-10-29 21:40:44 (1077339): Guest Log: drwxrwx---. 3 atlas atlas    4096 Oct 29 20:40 PanDA_Pilot-6382486769
2024-10-29 21:40:44 (1077339): Guest Log: -rw-------. 1 atlas atlas    1037 Oct 29 20:40 memory_monitor_summary.json
2024-10-29 21:40:44 (1077339): Guest Log: -rw-------. 1 atlas atlas  551289 Oct 29 20:40 pilotlog.txt
2024-10-29 21:40:44 (1077339): Guest Log: -rw-------. 1 atlas atlas  564841 Oct 29 20:40 log.41843680._005107.job.log.1
2024-10-29 21:40:44 (1077339): Guest Log: -rw-r--r--. 1 atlas atlas     571 Oct 29 20:40 runtime_log
2024-10-29 21:40:44 (1077339): Guest Log: -rw-------. 1 atlas atlas  573440 Oct 29 20:40 result.tar.gz
2024-10-29 21:40:44 (1077339): Guest Log: -rw-------. 1 atlas atlas     673 Oct 29 20:40 yBWMDmAx0P6n9Rq4apOajLDm4fhM0noT9bVorHsSDmxxMLDmFOFOGn.diag
2024-10-29 21:40:44 (1077339): Guest Log: -rw-r--r--. 1 atlas atlas   10345 Oct 29 20:40 runtime_log.err
2024-10-29 21:40:44 (1077339): Guest Log: Looking for outputfile HITS.41843680._005107.pool.root.1
2024-10-29 21:40:44 (1077339): Guest Log: No HITS file was produced
2024-10-29 21:40:44 (1077339): Guest Log: Successfully finished the ATLAS job!
2024-10-29 21:40:44 (1077339): Guest Log: Copying the results back to the shared directory!
2024-10-29 21:40:45 (1077339): Guest Log:  *** Contents of shared directory: ***
2024-10-29 21:40:45 (1077339): Guest Log: total 367984
2024-10-29 21:40:45 (1077339): Guest Log: -rw-r--r--. 1 root root 375706435 Oct 29 17:54 ATLAS.root_0
2024-10-29 21:40:45 (1077339): Guest Log: -rw-r--r--. 1 root root      6645 Oct 29 17:54 init_data.xml
2024-10-29 21:40:45 (1077339): Guest Log: -rw-r--r--. 1 root root    499918 Oct 29 17:54 input.tar.gz
2024-10-29 21:40:45 (1077339): Guest Log: -rw-r--r--. 1 root root    573440 Oct 29  2024 result.tar.gz
2024-10-29 21:40:45 (1077339): Guest Log: -rw-r--r--. 1 root root     17569 Oct 29 17:54 start_atlas.sh
2024-10-29 21:40:45 (1077339): Guest Log:  *** Success! Shutting down the machine. ***
2024-10-29 21:40:45 (1077339): VM Completion File Detected.
2024-10-29 21:40:45 (1077339): Powering off VM.
2024-10-29 21:40:46 (1077339): Successfully stopped VM.
2024-10-29 21:40:46 (1077339): Deregistering VM. (boinc_934f929f4048ac25, slot#0)
2024-10-29 21:40:46 (1077339): Removing network bandwidth throttle group from VM.
2024-10-29 21:40:46 (1077339): Removing VM from VirtualBox.
21:40:51 (1077339): called boinc_finish(0)

</stderr_txt>
]]>

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