| Name | SCFKDmHXyN6n9Rq4apOajLDm4fhM0noT9bVorHsSDmaH3KDm2aeKJo_0 |
| Workunit | 226248845 |
| Created | 23 Oct 2024, 21:57:41 UTC |
| Sent | 23 Oct 2024, 21:57:55 UTC |
| Report deadline | 31 Oct 2024, 21:57:55 UTC |
| Received | 24 Oct 2024, 2:22:37 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 0 (0x00000000) |
| Computer ID | 10830555 |
| Run time | 3 hours 21 min 43 sec |
| CPU time | 5 hours 22 min 39 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 41.61 GFLOPS |
| Application version | ATLAS Simulation v3.01 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.57 GB |
| Peak swap size | 2.18 GB |
| Peak disk usage | 1.52 GB |
Stderr output
<core_client_version>7.7.0</core_client_version> <![CDATA[ <stderr_txt> 17:58:44 (54956): wrapper (7.7.26015): starting 17:58:44 (54956): wrapper: running run_atlas (--nthreads 8) [2024-10-23 17:58:44] Arguments: --nthreads 8 [2024-10-23 17:58:44] Threads: 8 [2024-10-23 17:58:44] Checking for CVMFS [2024-10-23 17:58:45] Probing /cvmfs/atlas.cern.ch... OK [2024-10-23 17:58:46] Probing /cvmfs/atlas-condb.cern.ch... OK [2024-10-23 17:58:46] Running cvmfs_config stat atlas.cern.ch [2024-10-23 17:58:46] /usr/bin/cvmfs_config: line 944: cd: /cvmfs/ligo.storage.igwn.org: Permission denied [2024-10-23 17:58:46] [2024-10-23 17:58:46] CVMFS is ok [2024-10-23 17:58:46] Efficiency of ATLAS tasks can be improved by the following measure(s): [2024-10-23 17:58:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io. [2024-10-23 17:58:46] Further information can be found at the LHC@home message board. [2024-10-23 17:58:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 [2024-10-23 17:58:46] Checking for apptainer binary... [2024-10-23 17:58:46] Using apptainer found in PATH at /usr/bin/apptainer [2024-10-23 17:58:46] Running /usr/bin/apptainer --version [2024-10-23 17:58:46] apptainer version 1.3.2-1.el7 [2024-10-23 17:58:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname [2024-10-23 17:58:59] c-212-15.aglt2.org [2024-10-23 17:58:59] apptainer works [2024-10-23 17:58:59] Set ATHENA_PROC_NUMBER=8 [2024-10-23 17:58:59] Set ATHENA_CORE_NUMBER=8 [2024-10-23 17:58:59] Starting ATLAS job with PandaID=6376824007 [2024-10-23 17:58:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh [2024-10-23 22:20:34] *** The last 200 lines of the pilot log: *** [2024-10-23 22:20:34] self._execute_child(args, executable, preexec_fn, close_fds, [2024-10-23 22:20:34] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child [2024-10-23 22:20:34] raise child_exception_type(errno_num, err_msg, err_filename) [2024-10-23 22:20:34] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash' [2024-10-23 22:20:34] [2024-10-23 22:20:34] 2024-10-24 02:17:52,075 | WARNING | will send preliminary diagnostics (and pretend job is still running)=Exception caught: [Errno 107] Transport endpoint is not connected: '/bin/bash' [2024-10-23 22:20:34] 2024-10-24 02:17:52,075 | INFO | pilot will not update the server (heartbeat message will be written to file) [2024-10-23 22:20:34] 2024-10-24 02:17:52,075 | INFO | log transfer has not been attempted: IN_PROGRESS [2024-10-23 22:20:34] 2024-10-24 02:17:52,075 | INFO | job 6376824007 has state 'running' - writing heartbeat [2024-10-23 22:20:34] 2024-10-24 02:17:52,076 | INFO | payload/TRF did not report the number of read events [2024-10-23 22:20:34] 2024-10-24 02:17:52,090 | INFO | executing command: lscpu [2024-10-23 22:20:34] 2024-10-24 02:17:52,100 | WARNING | exception caught: [Errno 107] Transport endpoint is not connected: '/bin/bash' [2024-10-23 22:20:34] 2024-10-24 02:17:54,611 | INFO | monitor loop #893: job 0:6376824007 is in state 'failed' [2024-10-23 22:20:34] 2024-10-24 02:17:54,611 | INFO | will abort job monitoring soon since job state=failed (job is still in queue) [2024-10-23 22:20:34] 2024-10-24 02:17:57,117 | INFO | monitor loop #894: job 0:6376824007 is in state 'failed' [2024-10-23 22:20:34] 2024-10-24 02:17:57,117 | INFO | will abort job monitoring soon since job state=failed (job is still in queue) [2024-10-23 22:20:34] 2024-10-24 02:17:59,624 | INFO | monitor loop #895: job 0:6376824007 is in state 'failed' [2024-10-23 22:20:34] 2024-10-24 02:17:59,624 | INFO | will abort job monitoring soon since job state=failed (job is still in queue) [2024-10-23 22:20:34] 2024-10-24 02:18:00,761 | WARNING | job:queue_monitor:received graceful stop - abort after this iteration [2024-10-23 22:20:34] 2024-10-24 02:18:00,761 | WARNING | since job:queue_monitor is responsible for sending job updates, we sleep for 20 s [2024-10-23 22:20:34] 2024-10-24 02:18:00,761 | WARNING | aborting monitor loop since graceful_stop has been set (timing out remaining threads) [2024-10-23 22:20:34] 2024-10-24 02:18:00,762 | INFO | found 1 job(s) in 20 queues [2024-10-23 22:20:34] 2024-10-24 02:18:00,762 | INFO | aborting job 6376824007 [2024-10-23 22:20:34] 2024-10-24 02:18:00,762 | WARNING | could not find signal name for signal number None - using SIGTERM [2024-10-23 22:20:34] 2024-10-24 02:18:00,775 | WARNING | job:job_monitor:received graceful stop - abort after this iteration [2024-10-23 22:20:34] 2024-10-24 02:18:00,775 | INFO | aborting loop [2024-10-23 22:20:34] 2024-10-24 02:18:00,842 | WARNING | pilot monitor received instruction that args.graceful_stop has been set [2024-10-23 22:20:34] 2024-10-24 02:18:00,843 | WARNING | will wait for a maximum of 300 s for threads to finish [2024-10-23 22:20:34] 2024-10-24 02:18:01,225 | INFO | all payload control threads have been joined [2024-10-23 22:20:34] 2024-10-24 02:18:01,607 | INFO | all job control threads have been joined [2024-10-23 22:20:34] 2024-10-24 02:18:01,770 | INFO | all data control threads have been joined [2024-10-23 22:20:34] 2024-10-24 02:18:01,781 | INFO | [job] job monitor thread has finished [2024-10-23 22:20:34] 2024-10-24 02:18:01,873 | WARNING | data:queue_monitoring:received graceful stop - abort after this iteration [2024-10-23 22:20:34] 2024-10-24 02:18:01,983 | INFO | [job] validate thread has finished [2024-10-23 22:20:34] 2024-10-24 02:18:02,211 | INFO | [payload] failed_post thread has finished [2024-10-23 22:20:34] 2024-10-24 02:18:02,230 | INFO | [payload] control thread has finished [2024-10-23 22:20:34] 2024-10-24 02:18:02,591 | INFO | [payload] validate_post thread has finished [2024-10-23 22:20:34] 2024-10-24 02:18:02,611 | INFO | [payload] run_realtimelog thread has finished [2024-10-23 22:20:34] 2024-10-24 02:18:02,613 | INFO | [job] control thread has finished [2024-10-23 22:20:34] 2024-10-24 02:18:02,736 | INFO | [data] copytool_in thread has finished [2024-10-23 22:20:34] 2024-10-24 02:18:02,775 | INFO | [data] control thread has finished [2024-10-23 22:20:34] 2024-10-24 02:18:02,837 | INFO | [job] create_data_payload thread has finished [2024-10-23 22:20:34] 2024-10-24 02:18:02,845 | INFO | [job] retrieve thread has finished [2024-10-23 22:20:34] 2024-10-24 02:18:03,117 | INFO | [payload] validate_pre thread has finished [2024-10-23 22:20:34] 2024-10-24 02:18:05,423 | INFO | [payload] execute_payloads thread has finished [2024-10-23 22:20:34] 2024-10-24 02:18:05,887 | INFO | [data] queue_monitor thread has finished [2024-10-23 22:20:34] 2024-10-24 02:18:21,862 | INFO | job 6376824007 has state=failed [2024-10-23 22:20:34] 2024-10-24 02:18:21,862 | INFO | preparing for final server update for job 6376824007 in state='failed' [2024-10-23 22:20:34] 2024-10-24 02:18:21,966 | WARNING | job_aborted has been set - aborting pilot monitoring [2024-10-23 22:20:34] 2024-10-24 02:18:21,966 | INFO | [monitor] control thread has ended [2024-10-23 22:20:34] 2024-10-24 02:18:23,963 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:18:25,974 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:18:27,987 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:18:29,996 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:18:32,007 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:18:34,018 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:18:36,028 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:18:38,038 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:18:40,048 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:18:42,057 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:18:44,068 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:18:46,075 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:18:48,085 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:18:50,095 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:18:52,105 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:18:54,110 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:18:56,120 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:18:58,125 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:19:00,131 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:19:02,138 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:19:04,148 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:19:06,158 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:19:08,168 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:19:10,178 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:19:12,188 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:19:14,198 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:19:16,208 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:19:18,218 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:19:20,228 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:19:22,238 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:19:24,248 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:19:26,258 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:19:28,268 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:19:30,278 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:19:32,288 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:19:34,301 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:19:36,311 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:19:38,321 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:19:40,331 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:19:42,337 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:19:44,347 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:19:46,357 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:19:48,367 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:19:50,372 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:19:52,382 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:19:54,393 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:19:56,403 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:19:58,413 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:20:00,423 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:20:02,433 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:20:04,443 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:20:06,453 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:20:08,463 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:20:10,473 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:20:12,483 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:20:14,494 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:20:16,504 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:20:16,886 | INFO | proceeding with final server update [2024-10-23 22:20:34] 2024-10-24 02:20:16,908 | WARNING | URL Error: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1147)> [2024-10-23 22:20:34] 2024-10-24 02:20:16,909 | WARNING | failed to send data to https://pilot.atlas-ml.org: response=<urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer c [2024-10-23 22:20:34] 2024-10-24 02:20:16,909 | INFO | executing command: curl --connect-timeout 20 --max-time 120 -H "Content-Type: application/json" -X POST --upload-file /tmp/boinchome/slots/11/PanDA_Pilot-637682400 [2024-10-23 22:20:34] 2024-10-24 02:20:16,915 | WARNING | exception caught: [Errno 107] Transport endpoint is not connected: '/bin/bash' [2024-10-23 22:20:34] 2024-10-24 02:20:16,915 | INFO | this job has now completed (state=failed) [2024-10-23 22:20:34] 2024-10-24 02:20:16,915 | INFO | pilot will not update the server (heartbeat message will be written to file) [2024-10-23 22:20:34] 2024-10-24 02:20:16,915 | INFO | log transfer has not been attempted: IN_PROGRESS [2024-10-23 22:20:34] 2024-10-24 02:20:16,915 | INFO | job 6376824007 has state 'failed' - writing heartbeat [2024-10-23 22:20:34] 2024-10-24 02:20:16,915 | INFO | payload/TRF did not report the number of read events [2024-10-23 22:20:34] 2024-10-24 02:20:16,919 | INFO | executing command: lscpu [2024-10-23 22:20:34] File "/tmp/boinchome/slots/11/pilot3/pilot/common/exception.py", line 466, in run [2024-10-23 22:20:34] self._target(**self.kwargs) [2024-10-23 22:20:34] File "/tmp/boinchome/slots/11/pilot3/pilot/control/job.py", line 2638, in queue_monitor [2024-10-23 22:20:34] update_server(job, args) [2024-10-23 22:20:34] File "/tmp/boinchome/slots/11/pilot3/pilot/control/job.py", line 2687, in update_server [2024-10-23 22:20:34] send_state(job, args, job.state, metadata=metadata) [2024-10-23 22:20:34] File "/tmp/boinchome/slots/11/pilot3/pilot/control/job.py", line 430, in send_state [2024-10-23 22:20:34] data = get_data_structure(job, state, args, xml=xml, metadata=metadata) [2024-10-23 22:20:34] File "/tmp/boinchome/slots/11/pilot3/pilot/control/job.py", line 757, in get_data_structure [2024-10-23 22:20:34] cpumodel = get_cpu_cores(cpumodel) # add the CPU cores if not present [2024-10-23 22:20:34] File "/tmp/boinchome/slots/11/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores [2024-10-23 22:20:34] ec, stdout = lscpu() [2024-10-23 22:20:34] File "/tmp/boinchome/slots/11/pilot3/pilot/util/workernode.py", line 333, in lscpu [2024-10-23 22:20:34] ec, stdout, _ = execute(cmd) [2024-10-23 22:20:34] File "/tmp/boinchome/slots/11/pilot3/pilot/util/container.py", line 98, in execute [2024-10-23 22:20:34] process = subprocess.Popen(exe, [2024-10-23 22:20:34] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__ [2024-10-23 22:20:34] self._execute_child(args, executable, preexec_fn, close_fds, [2024-10-23 22:20:34] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child [2024-10-23 22:20:34] raise child_exception_type(errno_num, err_msg, err_filename) [2024-10-23 22:20:34] unexpected exception caught by thread run() function: (<class 'OSError'>, OSError(107, 'Transport endpoint is not connected'), <traceback object at 0x7f0a92296fc0>) [2024-10-23 22:20:34] Traceback (most recent call last): [2024-10-23 22:20:34] File "/tmp/boinchome/slots/11/pilot3/pilot/common/exception.py", line 466, in run [2024-10-23 22:20:34] self._target(**self.kwargs) [2024-10-23 22:20:34] File "/tmp/boinchome/slots/11/pilot3/pilot/control/job.py", line 2638, in queue_monitor [2024-10-23 22:20:34] update_server(job, args) [2024-10-23 22:20:34] File "/tmp/boinchome/slots/11/pilot3/pilot/control/job.py", line 2687, in update_server [2024-10-23 22:20:34] send_state(job, args, job.state, metadata=metadata) [2024-10-23 22:20:34] File "/tmp/boinchome/slots/11/pilot3/pilot/control/job.py", line 430, in send_state [2024-10-23 22:20:34] data = get_data_structure(job, state, args, xml=xml, metadata=metadata) [2024-10-23 22:20:34] File "/tmp/boinchome/slots/11/pilot3/pilot/control/job.py", line 757, in get_data_structure [2024-10-23 22:20:34] cpumodel = get_cpu_cores(cpumodel) # add the CPU cores if not present [2024-10-23 22:20:34] File "/tmp/boinchome/slots/11/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores [2024-10-23 22:20:34] ec, stdout = lscpu() [2024-10-23 22:20:34] File "/tmp/boinchome/slots/11/pilot3/pilot/util/workernode.py", line 333, in lscpu [2024-10-23 22:20:34] ec, stdout, _ = execute(cmd) [2024-10-23 22:20:34] File "/tmp/boinchome/slots/11/pilot3/pilot/util/container.py", line 98, in execute [2024-10-23 22:20:34] process = subprocess.Popen(exe, [2024-10-23 22:20:34] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__ [2024-10-23 22:20:34] self._execute_child(args, executable, preexec_fn, close_fds, [2024-10-23 22:20:34] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child [2024-10-23 22:20:34] raise child_exception_type(errno_num, err_msg, err_filename) [2024-10-23 22:20:34] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash' [2024-10-23 22:20:34] [2024-10-23 22:20:34] None [2024-10-23 22:20:34] exception has been put in bucket queue belonging to thread 'queue_monitor' [2024-10-23 22:20:34] setting graceful stop in 10 s since there is no point in continuing [2024-10-23 22:20:34] 2024-10-24 02:20:18,514 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:20:20,524 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:20:22,536 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:20:24,546 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:20:26,556 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139683626551104)>', '<ExcThread(queue_monitor, started 139682604119808)>'] [2024-10-23 22:20:34] 2024-10-24 02:20:28,566 | INFO | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 139683626551104)>']) [2024-10-23 22:20:34] 2024-10-24 02:20:33,591 | INFO | all workflow threads have been joined [2024-10-23 22:20:34] 2024-10-24 02:20:33,591 | INFO | end of generic workflow (traces error code: 0) [2024-10-23 22:20:34] 2024-10-24 02:20:33,592 | INFO | traces error code: 0 [2024-10-23 22:20:34] 2024-10-24 02:20:33,592 | INFO | pilot has finished (exit code=0, shell exit code=0) [2024-10-23 22:20:34] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-10-23 22:20:34] ==== pilot stdout END ==== [2024-10-23 22:20:34] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-10-23 22:20:34] ==== wrapper stdout RESUME ==== [2024-10-23 22:20:34] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-10-23 22:20:34] pilotpid: 55708 [2024-10-23 22:20:34] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-10-23 22:20:34] Pilot exit status: 0 [2024-10-23 22:20:34] ./runpilot2-wrapper.sh: line 973: /usr/bin/cat: Transport endpoint is not connected [2024-10-23 22:20:34] ./runpilot2-wrapper.sh: line 973: /usr/bin/cut: Transport endpoint is not connected [2024-10-23 22:20:34] ./runpilot2-wrapper.sh: line 973: /usr/bin/xargs: Transport endpoint is not connected [2024-10-23 22:20:34] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-10-23 22:20:34] pandaids: [2024-10-23 22:20:34] ./runpilot2-wrapper.sh: line 511: /usr/bin/ps: Transport endpoint is not connected [2024-10-23 22:20:34] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-10-23 22:20:34] No supervise_pilot CHILD process found [2024-10-23 22:20:34] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-10-23 22:20:34] Test setup, not cleaning [2024-10-23 22:20:34] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-10-23 22:20:34] ==== wrapper stdout END ==== [2024-10-23 22:20:34] ./runpilot2-wrapper.sh: line 10: /usr/bin/date: Transport endpoint is not connected [2024-10-23 22:20:34] ==== wrapper stderr END ==== [2024-10-23 22:20:34] ./runpilot2-wrapper.sh: line 532: /usr/bin/date: Transport endpoint is not connected [2024-10-23 22:20:34] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-10-23 22:20:34] apfmon messages muted [2024-10-23 22:20:34] *** Error codes and diagnostics *** [2024-10-23 22:20:34] *** Listing of results directory *** [2024-10-23 22:20:34] total 759536 [2024-10-23 22:20:34] -rw-r--r-- 1 boincer umatlas 486088 Oct 23 17:01 pilot3.tar.gz [2024-10-23 22:20:34] -rwx------ 1 boincer umatlas 33946 Oct 23 17:57 runpilot2-wrapper.sh [2024-10-23 22:20:34] -rw-r--r-- 1 boincer umatlas 5654 Oct 23 17:57 queuedata.json [2024-10-23 22:20:34] -rw-r--r-- 1 boincer umatlas 100 Oct 23 17:58 wrapper_26015_x86_64-pc-linux-gnu [2024-10-23 22:20:34] -rwxr-xr-x 1 boincer umatlas 7986 Oct 23 17:58 run_atlas [2024-10-23 22:20:34] -rw-r--r-- 1 boincer umatlas 105 Oct 23 17:58 job.xml [2024-10-23 22:20:34] -rw-r--r-- 2 boincer umatlas 386218278 Oct 23 17:58 EVNT.41780262._000016.pool.root.1 [2024-10-23 22:20:34] -rw-r--r-- 2 boincer umatlas 385360696 Oct 23 17:58 EVNT.41780262._000017.pool.root.1 [2024-10-23 22:20:34] -rw-r--r-- 2 boincer umatlas 17589 Oct 23 17:58 start_atlas.sh [2024-10-23 22:20:34] drwxrwx--x 2 boincer umatlas 4096 Oct 23 17:58 shared [2024-10-23 22:20:34] -rw-r--r-- 2 boincer umatlas 499869 Oct 23 17:58 input.tar.gz [2024-10-23 22:20:34] -rw-r--r-- 1 boincer umatlas 0 Oct 23 17:58 boinc_lockfile [2024-10-23 22:20:34] -rw-r--r-- 1 boincer umatlas 3392 Oct 23 17:58 pandaJob.out [2024-10-23 22:20:34] -rw------- 1 boincer umatlas 424 Oct 23 17:59 setup.sh.local [2024-10-23 22:20:34] -rw------- 1 boincer umatlas 1025434 Oct 23 18:00 agis_schedconf.cvmfs.json [2024-10-23 22:20:34] -rw------- 1 boincer umatlas 1611897 Oct 23 18:00 agis_ddmendpoints.agis.ALL.json [2024-10-23 22:20:34] drwx------ 4 boincer umatlas 4096 Oct 23 18:01 pilot3 [2024-10-23 22:20:34] -rw------- 1 boincer umatlas 901 Oct 23 22:10 heartbeat.json [2024-10-23 22:20:34] -rw-r--r-- 1 boincer umatlas 6303 Oct 23 22:12 init_data.xml [2024-10-23 22:20:34] -rw-r--r-- 1 boincer umatlas 531 Oct 23 22:17 boinc_task_state.xml [2024-10-23 22:20:34] -rw------- 1 boincer umatlas 1073 Oct 23 22:17 memory_monitor_summary.json [2024-10-23 22:20:34] -rw------- 1 boincer umatlas 95 Oct 23 22:17 pilot_heartbeat.json [2024-10-23 22:20:34] drwxrwx--- 3 boincer umatlas 4096 Oct 23 22:20 PanDA_Pilot-6376824007 [2024-10-23 22:20:34] -rw------- 1 boincer umatlas 1156035 Oct 23 22:20 pilotlog.txt [2024-10-23 22:20:34] -rw------- 1 boincer umatlas 1183500 Oct 23 22:20 log.41780268._000195.job.log.1 [2024-10-23 22:20:34] -rw-r--r-- 1 boincer umatlas 428 Oct 23 22:20 runtime_log [2024-10-23 22:20:34] -rw------- 1 boincer umatlas 627 Oct 23 22:20 SCFKDmHXyN6n9Rq4apOajLDm4fhM0noT9bVorHsSDmaH3KDm2aeKJo.diag [2024-10-23 22:20:34] -rw-r--r-- 1 boincer umatlas 8192 Oct 23 22:20 boinc_mmap_file [2024-10-23 22:20:34] -rw-r--r-- 1 boincer umatlas 28 Oct 23 22:20 wrapper_checkpoint.txt [2024-10-23 22:20:34] -rw-r--r-- 1 boincer umatlas 11360 Oct 23 22:20 runtime_log.err [2024-10-23 22:20:34] -rw-r--r-- 1 boincer umatlas 28443 Oct 23 22:20 stderr.txt [2024-10-23 22:20:34] No HITS result produced [2024-10-23 22:20:34] *** Contents of shared directory: *** [2024-10-23 22:20:34] total 754020 [2024-10-23 22:20:34] -rw-r--r-- 2 boincer umatlas 386218278 Oct 23 17:58 ATLAS.root_0 [2024-10-23 22:20:34] -rw-r--r-- 2 boincer umatlas 385360696 Oct 23 17:58 ATLAS.root_1 [2024-10-23 22:20:34] -rw-r--r-- 2 boincer umatlas 17589 Oct 23 17:58 start_atlas.sh [2024-10-23 22:20:34] -rw-r--r-- 2 boincer umatlas 499869 Oct 23 17:58 input.tar.gz 22:20:36 (54956): run_atlas exited; CPU time 3474.021772 22:20:36 (54956): called boinc_finish(0) </stderr_txt> <message> upload failure: <file_xfer_error> <file_name>SCFKDmHXyN6n9Rq4apOajLDm4fhM0noT9bVorHsSDmaH3KDm2aeKJo_0_r132551573_ATLAS_result</file_name> <error_code>-161 (not found)</error_code> </file_xfer_error> </message> ]]>
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