| Name | Dw7LDmC4xN6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmJNXLDms7EBZn_0 |
| Workunit | 226248729 |
| Created | 23 Oct 2024, 21:27:33 UTC |
| Sent | 23 Oct 2024, 21:27:39 UTC |
| Report deadline | 31 Oct 2024, 21:27:39 UTC |
| Received | 24 Oct 2024, 2:22:37 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 0 (0x00000000) |
| Computer ID | 10830555 |
| Run time | 3 hours 51 min 47 sec |
| CPU time | 7 hours 5 min 44 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 41.61 GFLOPS |
| Application version | ATLAS Simulation v3.01 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.60 GB |
| Peak swap size | 31.65 GB |
| Peak disk usage | 794.09 MB |
Stderr output
<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:28:14 (75745): wrapper (7.7.26015): starting
17:28:14 (75745): wrapper: running run_atlas (--nthreads 8)
[2024-10-23 17:28:14] Arguments: --nthreads 8
[2024-10-23 17:28:14] Threads: 8
[2024-10-23 17:28:14] Checking for CVMFS
[2024-10-23 17:28:14] Probing /cvmfs/atlas.cern.ch... OK
[2024-10-23 17:28:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-10-23 17:28:14] Running cvmfs_config stat atlas.cern.ch
[2024-10-23 17:28:15] /usr/bin/cvmfs_config: line 944: cd: /cvmfs/ligo.storage.igwn.org: Permission denied
[2024-10-23 17:28:15]
[2024-10-23 17:28:15] CVMFS is ok
[2024-10-23 17:28:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-10-23 17:28:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-10-23 17:28:15] Further information can be found at the LHC@home message board.
[2024-10-23 17:28:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-10-23 17:28:15] Checking for apptainer binary...
[2024-10-23 17:28:15] Using apptainer found in PATH at /usr/bin/apptainer
[2024-10-23 17:28:15] Running /usr/bin/apptainer --version
[2024-10-23 17:28:15] apptainer version 1.3.2-1.el7
[2024-10-23 17:28:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-10-23 17:28:16] c-212-15.aglt2.org
[2024-10-23 17:28:16] apptainer works
[2024-10-23 17:28:16] Set ATHENA_PROC_NUMBER=8
[2024-10-23 17:28:16] Set ATHENA_CORE_NUMBER=8
[2024-10-23 17:28:16] Starting ATLAS job with PandaID=6376799843
[2024-10-23 17:28:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-10-23 22:20:08] *** The last 200 lines of the pilot log: ***
[2024-10-23 22:20:08] setting graceful stop in 10 s since there is no point in continuing
[2024-10-23 22:20:08] 2024-10-24 02:17:45,244 | WARNING | thread 'copytool_out' received an exception from bucket: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-10-23 22:20:08] 2024-10-24 02:17:47,697 | WARNING | Exception caught: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-10-23 22:20:08] 2024-10-24 02:17:47,698 | WARNING | Traceback (most recent call last):
[2024-10-23 22:20:08] File "/tmp/boinchome/slots/1/pilot3/pilot/util/monitoring.py", line 109, in job_monitor_tasks
[2024-10-23 22:20:08] cpuconsumptiontime = get_current_cpu_consumption_time(job.pid)
[2024-10-23 22:20:08] File "/tmp/boinchome/slots/1/pilot3/pilot/util/processes.py", line 600, in get_current_cpu_consumption_time
[2024-10-23 22:20:08] _, ps_cache, _ = execute("ps -eo pid,ppid -m", mute=True, timeout=60)
[2024-10-23 22:20:08] File "/tmp/boinchome/slots/1/pilot3/pilot/util/container.py", line 98, in execute
[2024-10-23 22:20:08] process = subprocess.Popen(exe,
[2024-10-23 22:20:08] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-10-23 22:20:08] self._execute_child(args, executable, preexec_fn, close_fds,
[2024-10-23 22:20:08] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-10-23 22:20:08] raise child_exception_type(errno_num, err_msg, err_filename)
[2024-10-23 22:20:08] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-10-23 22:20:08]
[2024-10-23 22:20:08] 2024-10-24 02:17:47,698 | WARNING | will send preliminary diagnostics (and pretend job is still running)=Exception caught: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-10-23 22:20:08] 2024-10-24 02:17:47,698 | INFO | pilot will not update the server (heartbeat message will be written to file)
[2024-10-23 22:20:08] 2024-10-24 02:17:47,698 | INFO | log transfer has not been attempted: IN_PROGRESS
[2024-10-23 22:20:08] 2024-10-24 02:17:47,698 | INFO | job 6376799843 has state 'running' - writing heartbeat
[2024-10-23 22:20:08] 2024-10-24 02:17:47,698 | INFO | payload/TRF did not report the number of read events
[2024-10-23 22:20:08] 2024-10-24 02:17:47,726 | INFO | executing command: lscpu
[2024-10-23 22:20:08] 2024-10-24 02:17:47,802 | WARNING | exception caught: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-10-23 22:20:08] 2024-10-24 02:17:50,307 | INFO | monitor loop #1028: job 0:6376799843 is in state 'failed'
[2024-10-23 22:20:08] 2024-10-24 02:17:50,308 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2024-10-23 22:20:08] 2024-10-24 02:17:52,815 | INFO | monitor loop #1029: job 0:6376799843 is in state 'failed'
[2024-10-23 22:20:08] 2024-10-24 02:17:52,815 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2024-10-23 22:20:08] 2024-10-24 02:17:54,323 | WARNING | job:job_monitor:received graceful stop - abort after this iteration
[2024-10-23 22:20:08] 2024-10-24 02:17:54,323 | INFO | aborting loop
[2024-10-23 22:20:08] 2024-10-24 02:17:54,431 | INFO | all payload control threads have been joined
[2024-10-23 22:20:08] 2024-10-24 02:17:54,960 | WARNING | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-10-23 22:20:08] 2024-10-24 02:17:55,051 | INFO | all data control threads have been joined
[2024-10-23 22:20:08] 2024-10-24 02:17:55,096 | INFO | found 1 job(s) in 20 queues
[2024-10-23 22:20:08] 2024-10-24 02:17:55,096 | INFO | aborting job 6376799843
[2024-10-23 22:20:08] 2024-10-24 02:17:55,096 | WARNING | could not find signal name for signal number None - using SIGTERM
[2024-10-23 22:20:08] 2024-10-24 02:17:55,203 | WARNING | pilot monitor received instruction that args.graceful_stop has been set
[2024-10-23 22:20:08] 2024-10-24 02:17:55,204 | WARNING | will wait for a maximum of 300 s for threads to finish
[2024-10-23 22:20:08] 2024-10-24 02:17:55,204 | INFO | job 6376799843 has state=failed
[2024-10-23 22:20:08] 2024-10-24 02:17:55,204 | INFO | preparing for final server update for job 6376799843 in state='failed'
[2024-10-23 22:20:08] 2024-10-24 02:17:55,328 | INFO | [job] job monitor thread has finished
[2024-10-23 22:20:08] 2024-10-24 02:17:55,331 | INFO | [job] retrieve thread has finished
[2024-10-23 22:20:08] 2024-10-24 02:17:55,351 | INFO | [payload] run_realtimelog thread has finished
[2024-10-23 22:20:08] 2024-10-24 02:17:55,436 | INFO | [payload] control thread has finished
[2024-10-23 22:20:08] 2024-10-24 02:17:55,505 | INFO | all job control threads have been joined
[2024-10-23 22:20:08] 2024-10-24 02:17:55,627 | INFO | [payload] validate_post thread has finished
[2024-10-23 22:20:08] 2024-10-24 02:17:56,056 | INFO | [data] control thread has finished
[2024-10-23 22:20:08] 2024-10-24 02:17:56,211 | WARNING | job_aborted has been set - aborting pilot monitoring
[2024-10-23 22:20:08] 2024-10-24 02:17:56,211 | INFO | [monitor] control thread has ended
[2024-10-23 22:20:08] 2024-10-24 02:17:56,313 | INFO | [job] create_data_payload thread has finished
[2024-10-23 22:20:08] 2024-10-24 02:17:56,325 | INFO | [job] validate thread has finished
[2024-10-23 22:20:08] 2024-10-24 02:17:56,335 | INFO | [payload] validate_pre thread has finished
[2024-10-23 22:20:08] 2024-10-24 02:17:56,337 | INFO | [data] copytool_in thread has finished
[2024-10-23 22:20:08] 2024-10-24 02:17:56,496 | INFO | [payload] failed_post thread has finished
[2024-10-23 22:20:08] 2024-10-24 02:17:56,511 | INFO | [job] control thread has finished
[2024-10-23 22:20:08] 2024-10-24 02:17:58,969 | INFO | [data] queue_monitor thread has finished
[2024-10-23 22:20:08] 2024-10-24 02:18:00,081 | INFO | [payload] execute_payloads thread has finished
[2024-10-23 22:20:08] 2024-10-24 02:18:01,551 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:18:03,563 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:18:05,574 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:18:07,587 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:18:09,601 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:18:11,612 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:18:13,622 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:18:15,633 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:18:17,659 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:18:19,671 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:18:21,682 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:18:23,692 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:18:25,703 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:18:27,714 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:18:29,726 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:18:31,736 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:18:33,747 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:18:35,757 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:18:37,767 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:18:39,781 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:18:41,792 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:18:43,802 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:18:45,812 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:18:47,822 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:18:49,832 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:18:51,842 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:18:53,852 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:18:55,862 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:18:57,872 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:18:59,882 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:19:01,889 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:19:03,899 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:19:05,911 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:19:07,921 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:19:09,932 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:19:11,942 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:19:13,952 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:19:15,962 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:19:17,972 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:19:19,982 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:19:21,992 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:19:24,002 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:19:26,012 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:19:28,022 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:19:30,030 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:19:32,040 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:19:34,050 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:19:36,060 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:19:38,070 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:19:40,080 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:19:42,090 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:19:44,099 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:19:46,109 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:19:48,119 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:19:50,130 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:19:50,265 | INFO | proceeding with final server update
[2024-10-23 22:20:08] 2024-10-24 02:19:50,265 | INFO | this job has now completed (state=failed)
[2024-10-23 22:20:08] 2024-10-24 02:19:50,265 | INFO | pilot will not update the server (heartbeat message will be written to file)
[2024-10-23 22:20:08] 2024-10-24 02:19:50,266 | INFO | log transfer has not been attempted: IN_PROGRESS
[2024-10-23 22:20:08] 2024-10-24 02:19:50,266 | INFO | job 6376799843 has state 'failed' - writing heartbeat
[2024-10-23 22:20:08] 2024-10-24 02:19:50,266 | INFO | payload/TRF did not report the number of read events
[2024-10-23 22:20:08] 2024-10-24 02:19:50,268 | INFO | executing command: lscpu
[2024-10-23 22:20:08] File "/tmp/boinchome/slots/1/pilot3/pilot/common/exception.py", line 466, in run
[2024-10-23 22:20:08] self._target(**self.kwargs)
[2024-10-23 22:20:08] File "/tmp/boinchome/slots/1/pilot3/pilot/control/job.py", line 2638, in queue_monitor
[2024-10-23 22:20:08] update_server(job, args)
[2024-10-23 22:20:08] File "/tmp/boinchome/slots/1/pilot3/pilot/control/job.py", line 2687, in update_server
[2024-10-23 22:20:08] send_state(job, args, job.state, metadata=metadata)
[2024-10-23 22:20:08] File "/tmp/boinchome/slots/1/pilot3/pilot/control/job.py", line 430, in send_state
[2024-10-23 22:20:08] data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2024-10-23 22:20:08] File "/tmp/boinchome/slots/1/pilot3/pilot/control/job.py", line 757, in get_data_structure
[2024-10-23 22:20:08] cpumodel = get_cpu_cores(cpumodel) # add the CPU cores if not present
[2024-10-23 22:20:08] File "/tmp/boinchome/slots/1/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores
[2024-10-23 22:20:08] ec, stdout = lscpu()
[2024-10-23 22:20:08] File "/tmp/boinchome/slots/1/pilot3/pilot/util/workernode.py", line 333, in lscpu
[2024-10-23 22:20:08] ec, stdout, _ = execute(cmd)
[2024-10-23 22:20:08] File "/tmp/boinchome/slots/1/pilot3/pilot/util/container.py", line 98, in execute
[2024-10-23 22:20:08] process = subprocess.Popen(exe,
[2024-10-23 22:20:08] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-10-23 22:20:08] self._execute_child(args, executable, preexec_fn, close_fds,
[2024-10-23 22:20:08] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-10-23 22:20:08] raise child_exception_type(errno_num, err_msg, err_filename)
[2024-10-23 22:20:08] unexpected exception caught by thread run() function: (<class 'OSError'>, OSError(107, 'Transport endpoint is not connected'), <traceback object at 0x7ff01e3ac480>)
[2024-10-23 22:20:08] Traceback (most recent call last):
[2024-10-23 22:20:08] File "/tmp/boinchome/slots/1/pilot3/pilot/common/exception.py", line 466, in run
[2024-10-23 22:20:08] self._target(**self.kwargs)
[2024-10-23 22:20:08] File "/tmp/boinchome/slots/1/pilot3/pilot/control/job.py", line 2638, in queue_monitor
[2024-10-23 22:20:08] update_server(job, args)
[2024-10-23 22:20:08] File "/tmp/boinchome/slots/1/pilot3/pilot/control/job.py", line 2687, in update_server
[2024-10-23 22:20:08] send_state(job, args, job.state, metadata=metadata)
[2024-10-23 22:20:08] File "/tmp/boinchome/slots/1/pilot3/pilot/control/job.py", line 430, in send_state
[2024-10-23 22:20:08] data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2024-10-23 22:20:08] File "/tmp/boinchome/slots/1/pilot3/pilot/control/job.py", line 757, in get_data_structure
[2024-10-23 22:20:08] cpumodel = get_cpu_cores(cpumodel) # add the CPU cores if not present
[2024-10-23 22:20:08] File "/tmp/boinchome/slots/1/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores
[2024-10-23 22:20:08] ec, stdout = lscpu()
[2024-10-23 22:20:08] File "/tmp/boinchome/slots/1/pilot3/pilot/util/workernode.py", line 333, in lscpu
[2024-10-23 22:20:08] ec, stdout, _ = execute(cmd)
[2024-10-23 22:20:08] File "/tmp/boinchome/slots/1/pilot3/pilot/util/container.py", line 98, in execute
[2024-10-23 22:20:08] process = subprocess.Popen(exe,
[2024-10-23 22:20:08] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-10-23 22:20:08] self._execute_child(args, executable, preexec_fn, close_fds,
[2024-10-23 22:20:08] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-10-23 22:20:08] raise child_exception_type(errno_num, err_msg, err_filename)
[2024-10-23 22:20:08] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-10-23 22:20:08]
[2024-10-23 22:20:08] None
[2024-10-23 22:20:08] exception has been put in bucket queue belonging to thread 'queue_monitor'
[2024-10-23 22:20:08] setting graceful stop in 10 s since there is no point in continuing
[2024-10-23 22:20:08] 2024-10-24 02:19:52,140 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:19:54,150 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:19:56,163 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:19:58,173 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:20:00,183 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140669523461952)>', '<ExcThread(queue_monitor, started 140668928239360)>']
[2024-10-23 22:20:08] 2024-10-24 02:20:02,194 | INFO | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 140669523461952)>'])
[2024-10-23 22:20:08] 2024-10-24 02:20:07,219 | INFO | all workflow threads have been joined
[2024-10-23 22:20:08] 2024-10-24 02:20:07,219 | INFO | end of generic workflow (traces error code: 0)
[2024-10-23 22:20:08] 2024-10-24 02:20:07,219 | INFO | traces error code: 0
[2024-10-23 22:20:08] 2024-10-24 02:20:07,219 | INFO | pilot has finished (exit code=0, shell exit code=0)
[2024-10-23 22:20:08] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:20:08] ==== pilot stdout END ====
[2024-10-23 22:20:08] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:20:08] ==== wrapper stdout RESUME ====
[2024-10-23 22:20:08] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:20:08] pilotpid: 14455
[2024-10-23 22:20:08] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:20:08] Pilot exit status: 0
[2024-10-23 22:20:08] ./runpilot2-wrapper.sh: line 973: /usr/bin/cat: Transport endpoint is not connected
[2024-10-23 22:20:08] ./runpilot2-wrapper.sh: line 973: /usr/bin/xargs: Transport endpoint is not connected
[2024-10-23 22:20:08] ./runpilot2-wrapper.sh: line 973: /usr/bin/cut: Transport endpoint is not connected
[2024-10-23 22:20:08] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:20:08] pandaids:
[2024-10-23 22:20:08] ./runpilot2-wrapper.sh: line 511: /usr/bin/ps: Transport endpoint is not connected
[2024-10-23 22:20:08] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:20:08] No supervise_pilot CHILD process found
[2024-10-23 22:20:08] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:20:08] Test setup, not cleaning
[2024-10-23 22:20:08] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:20:08] ==== wrapper stdout END ====
[2024-10-23 22:20:08] ./runpilot2-wrapper.sh: line 10: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:20:08] ==== wrapper stderr END ====
[2024-10-23 22:20:08] ./runpilot2-wrapper.sh: line 532: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:20:08] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:20:08] apfmon messages muted
[2024-10-23 22:20:08] *** Error codes and diagnostics ***
[2024-10-23 22:20:08] *** Listing of results directory ***
[2024-10-23 22:20:08] total 359720
[2024-10-23 22:20:08] -rw-r--r-- 1 boincer umatlas 486088 Oct 23 17:01 pilot3.tar.gz
[2024-10-23 22:20:08] -rw-r--r-- 1 boincer umatlas 5654 Oct 23 17:26 queuedata.json
[2024-10-23 22:20:08] -rwx------ 1 boincer umatlas 33946 Oct 23 17:27 runpilot2-wrapper.sh
[2024-10-23 22:20:08] -rw-r--r-- 1 boincer umatlas 100 Oct 23 17:28 wrapper_26015_x86_64-pc-linux-gnu
[2024-10-23 22:20:08] -rwxr-xr-x 1 boincer umatlas 7986 Oct 23 17:28 run_atlas
[2024-10-23 22:20:08] -rw-r--r-- 1 boincer umatlas 105 Oct 23 17:28 job.xml
[2024-10-23 22:20:08] -rw-r--r-- 2 boincer umatlas 361752479 Oct 23 17:28 EVNT.41780022._000001.pool.root.1
[2024-10-23 22:20:08] -rw-r--r-- 2 boincer umatlas 17539 Oct 23 17:28 start_atlas.sh
[2024-10-23 22:20:08] drwxrwx--x 2 boincer umatlas 4096 Oct 23 17:28 shared
[2024-10-23 22:20:08] -rw-r--r-- 2 boincer umatlas 499777 Oct 23 17:28 input.tar.gz
[2024-10-23 22:20:08] -rw-r--r-- 1 boincer umatlas 0 Oct 23 17:28 boinc_lockfile
[2024-10-23 22:20:08] -rw-r--r-- 1 boincer umatlas 2847 Oct 23 17:28 pandaJob.out
[2024-10-23 22:20:08] -rw------- 1 boincer umatlas 424 Oct 23 17:28 setup.sh.local
[2024-10-23 22:20:08] -rw------- 1 boincer umatlas 1025434 Oct 23 17:28 agis_schedconf.cvmfs.json
[2024-10-23 22:20:08] -rw------- 1 boincer umatlas 1611897 Oct 23 17:28 agis_ddmendpoints.agis.ALL.json
[2024-10-23 22:20:08] drwx------ 4 boincer umatlas 4096 Oct 23 17:28 pilot3
[2024-10-23 22:20:08] -rw------- 1 boincer umatlas 908 Oct 23 22:08 heartbeat.json
[2024-10-23 22:20:08] -rw-r--r-- 1 boincer umatlas 6302 Oct 23 22:12 init_data.xml
[2024-10-23 22:20:08] -rw------- 1 boincer umatlas 95 Oct 23 22:17 pilot_heartbeat.json
[2024-10-23 22:20:08] -rw-r--r-- 1 boincer umatlas 531 Oct 23 22:17 boinc_task_state.xml
[2024-10-23 22:20:08] -rw------- 1 boincer umatlas 1085 Oct 23 22:17 memory_monitor_summary.json
[2024-10-23 22:20:08] drwxrwx--- 3 boincer umatlas 4096 Oct 23 22:17 PanDA_Pilot-6376799843
[2024-10-23 22:20:08] -rw------- 1 boincer umatlas 1367948 Oct 23 22:20 pilotlog.txt
[2024-10-23 22:20:08] -rw------- 1 boincer umatlas 1395468 Oct 23 22:20 log.41780024._000095.job.log.1
[2024-10-23 22:20:08] -rw-r--r-- 1 boincer umatlas 428 Oct 23 22:20 runtime_log
[2024-10-23 22:20:08] -rw------- 1 boincer umatlas 627 Oct 23 22:20 Dw7LDmC4xN6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmJNXLDms7EBZn.diag
[2024-10-23 22:20:08] -rw-r--r-- 1 boincer umatlas 28 Oct 23 22:20 wrapper_checkpoint.txt
[2024-10-23 22:20:08] -rw-r--r-- 1 boincer umatlas 11290 Oct 23 22:20 runtime_log.err
[2024-10-23 22:20:08] -rw-r--r-- 1 boincer umatlas 8192 Oct 23 22:20 boinc_mmap_file
[2024-10-23 22:20:08] -rw-r--r-- 1 boincer umatlas 27840 Oct 23 22:20 stderr.txt
[2024-10-23 22:20:08] No HITS result produced
[2024-10-23 22:20:08] *** Contents of shared directory: ***
[2024-10-23 22:20:08] total 353792
[2024-10-23 22:20:08] -rw-r--r-- 2 boincer umatlas 361752479 Oct 23 17:28 ATLAS.root_0
[2024-10-23 22:20:08] -rw-r--r-- 2 boincer umatlas 17539 Oct 23 17:28 start_atlas.sh
[2024-10-23 22:20:08] -rw-r--r-- 2 boincer umatlas 499777 Oct 23 17:28 input.tar.gz
22:20:10 (75745): run_atlas exited; CPU time 3918.751916
22:20:10 (75745): called boinc_finish(0)
</stderr_txt>
<message>
upload failure: <file_xfer_error>
<file_name>Dw7LDmC4xN6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmJNXLDms7EBZn_0_r854256255_ATLAS_result</file_name>
<error_code>-161 (not found)</error_code>
</file_xfer_error>
</message>
]]>
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