| Name | SSPODm9oxN6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmhMXLDmSjwHln_0 |
| Workunit | 226248652 |
| Created | 23 Oct 2024, 21:12:01 UTC |
| Sent | 23 Oct 2024, 21:12:08 UTC |
| Report deadline | 31 Oct 2024, 21:12:08 UTC |
| Received | 24 Oct 2024, 2:22:37 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 0 (0x00000000) |
| Computer ID | 10830555 |
| Run time | 5 hours 3 min 11 sec |
| CPU time | 7 hours 32 min 20 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 41.61 GFLOPS |
| Application version | ATLAS Simulation v3.01 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.57 GB |
| Peak swap size | 31.71 GB |
| Peak disk usage | 851.85 MB |
Stderr output
<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:13:05 (80524): wrapper (7.7.26015): starting
17:13:05 (80524): wrapper: running run_atlas (--nthreads 8)
[2024-10-23 17:13:05] Arguments: --nthreads 8
[2024-10-23 17:13:05] Threads: 8
[2024-10-23 17:13:05] Checking for CVMFS
[2024-10-23 17:13:05] Probing /cvmfs/atlas.cern.ch... OK
[2024-10-23 17:13:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-10-23 17:13:06] Running cvmfs_config stat atlas.cern.ch
[2024-10-23 17:13:06] /usr/bin/cvmfs_config: line 944: cd: /cvmfs/ligo.storage.igwn.org: Permission denied
[2024-10-23 17:13:06]
[2024-10-23 17:13:06] CVMFS is ok
[2024-10-23 17:13:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-10-23 17:13:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-10-23 17:13:06] Further information can be found at the LHC@home message board.
[2024-10-23 17:13:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-10-23 17:13:06] Checking for apptainer binary...
[2024-10-23 17:13:06] Using apptainer found in PATH at /usr/bin/apptainer
[2024-10-23 17:13:06] Running /usr/bin/apptainer --version
[2024-10-23 17:13:06] apptainer version 1.3.2-1.el7
[2024-10-23 17:13:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-10-23 17:13:09] c-212-15.aglt2.org
[2024-10-23 17:13:09] apptainer works
[2024-10-23 17:13:09] Set ATHENA_PROC_NUMBER=8
[2024-10-23 17:13:09] Set ATHENA_CORE_NUMBER=8
[2024-10-23 17:13:09] Starting ATLAS job with PandaID=6376788056
[2024-10-23 17:13:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-10-23 22:21:08] *** The last 200 lines of the pilot log: ***
[2024-10-23 22:21:08] File "/tmp/boinchome/slots/8/pilot3/pilot/util/monitoring.py", line 109, in job_monitor_tasks
[2024-10-23 22:21:08] cpuconsumptiontime = get_current_cpu_consumption_time(job.pid)
[2024-10-23 22:21:08] File "/tmp/boinchome/slots/8/pilot3/pilot/util/processes.py", line 600, in get_current_cpu_consumption_time
[2024-10-23 22:21:08] _, ps_cache, _ = execute("ps -eo pid,ppid -m", mute=True, timeout=60)
[2024-10-23 22:21:08] File "/tmp/boinchome/slots/8/pilot3/pilot/util/container.py", line 98, in execute
[2024-10-23 22:21:08] process = subprocess.Popen(exe,
[2024-10-23 22:21:08] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-10-23 22:21:08] self._execute_child(args, executable, preexec_fn, close_fds,
[2024-10-23 22:21:08] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-10-23 22:21:08] raise child_exception_type(errno_num, err_msg, err_filename)
[2024-10-23 22:21:08] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-10-23 22:21:08]
[2024-10-23 22:21:08] 2024-10-24 02:18:29,166 | WARNING | will send preliminary diagnostics (and pretend job is still running)=Exception caught: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-10-23 22:21:08] 2024-10-24 02:18:29,166 | INFO | pilot will not update the server (heartbeat message will be written to file)
[2024-10-23 22:21:08] 2024-10-24 02:18:29,167 | INFO | log transfer has not been attempted: IN_PROGRESS
[2024-10-23 22:21:08] 2024-10-24 02:18:29,167 | INFO | job 6376788056 has state 'running' - writing heartbeat
[2024-10-23 22:21:08] 2024-10-24 02:18:29,167 | INFO | payload/TRF did not report the number of read events
[2024-10-23 22:21:08] 2024-10-24 02:18:29,170 | INFO | executing command: lscpu
[2024-10-23 22:21:08] 2024-10-24 02:18:29,182 | WARNING | exception caught: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-10-23 22:21:08] 2024-10-24 02:18:31,685 | INFO | monitor loop #1099: job 0:6376788056 is in state 'failed'
[2024-10-23 22:21:08] 2024-10-24 02:18:31,686 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2024-10-23 22:21:08] 2024-10-24 02:18:34,189 | INFO | monitor loop #1100: job 0:6376788056 is in state 'failed'
[2024-10-23 22:21:08] 2024-10-24 02:18:34,189 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2024-10-23 22:21:08] 2024-10-24 02:18:35,174 | WARNING | job:job_monitor:received graceful stop - abort after this iteration
[2024-10-23 22:21:08] 2024-10-24 02:18:35,174 | WARNING | job:queue_monitor:received graceful stop - abort after this iteration
[2024-10-23 22:21:08] 2024-10-24 02:18:35,174 | INFO | will abort loop
[2024-10-23 22:21:08] 2024-10-24 02:18:35,175 | WARNING | since job:queue_monitor is responsible for sending job updates, we sleep for 20 s
[2024-10-23 22:21:08] 2024-10-24 02:18:36,016 | INFO | all payload control threads have been joined
[2024-10-23 22:21:08] 2024-10-24 02:18:36,021 | INFO | all data control threads have been joined
[2024-10-23 22:21:08] 2024-10-24 02:18:36,023 | INFO | found 1 job(s) in 20 queues
[2024-10-23 22:21:08] 2024-10-24 02:18:36,023 | INFO | aborting job 6376788056
[2024-10-23 22:21:08] 2024-10-24 02:18:36,026 | WARNING | could not find signal name for signal number None - using SIGTERM
[2024-10-23 22:21:08] 2024-10-24 02:18:36,085 | WARNING | pilot monitor received instruction that args.graceful_stop has been set
[2024-10-23 22:21:08] 2024-10-24 02:18:36,085 | WARNING | will wait for a maximum of 300 s for threads to finish
[2024-10-23 22:21:08] 2024-10-24 02:18:36,180 | INFO | [job] job monitor thread has finished
[2024-10-23 22:21:08] 2024-10-24 02:18:36,260 | WARNING | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-10-23 22:21:08] 2024-10-24 02:18:36,358 | INFO | [job] retrieve thread has finished
[2024-10-23 22:21:08] 2024-10-24 02:18:36,431 | INFO | all job control threads have been joined
[2024-10-23 22:21:08] 2024-10-24 02:18:36,491 | INFO | [payload] validate_pre thread has finished
[2024-10-23 22:21:08] 2024-10-24 02:18:36,502 | INFO | [job] create_data_payload thread has finished
[2024-10-23 22:21:08] 2024-10-24 02:18:36,502 | INFO | [data] copytool_in thread has finished
[2024-10-23 22:21:08] 2024-10-24 02:18:36,518 | INFO | [job] validate thread has finished
[2024-10-23 22:21:08] 2024-10-24 02:18:36,645 | INFO | [payload] failed_post thread has finished
[2024-10-23 22:21:08] 2024-10-24 02:18:37,026 | INFO | [data] control thread has finished
[2024-10-23 22:21:08] 2024-10-24 02:18:37,026 | INFO | [payload] control thread has finished
[2024-10-23 22:21:08] 2024-10-24 02:18:37,330 | INFO | [payload] run_realtimelog thread has finished
[2024-10-23 22:21:08] 2024-10-24 02:18:37,436 | INFO | [job] control thread has finished
[2024-10-23 22:21:08] 2024-10-24 02:18:37,681 | INFO | [payload] validate_post thread has finished
[2024-10-23 22:21:08] 2024-10-24 02:18:39,925 | INFO | [payload] execute_payloads thread has finished
[2024-10-23 22:21:08] 2024-10-24 02:18:40,265 | INFO | [data] queue_monitor thread has finished
[2024-10-23 22:21:08] 2024-10-24 02:18:56,276 | INFO | job 6376788056 has state=failed
[2024-10-23 22:21:08] 2024-10-24 02:18:56,276 | INFO | preparing for final server update for job 6376788056 in state='failed'
[2024-10-23 22:21:08] 2024-10-24 02:18:57,182 | WARNING | job_aborted has been set - aborting pilot monitoring
[2024-10-23 22:21:08] 2024-10-24 02:18:57,182 | INFO | [monitor] control thread has ended
[2024-10-23 22:21:08] 2024-10-24 02:18:57,221 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:18:59,232 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:19:01,239 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:19:03,249 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:19:05,260 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:19:07,270 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:19:09,280 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:19:11,290 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:19:13,301 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:19:15,312 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:19:17,321 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:19:19,332 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:19:21,334 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:19:23,344 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:19:25,354 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:19:27,364 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:19:29,374 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:19:31,379 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:19:33,385 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:19:35,395 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:19:37,405 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:19:39,415 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:19:41,425 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:19:43,435 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:19:45,445 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:19:47,455 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:19:49,465 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:19:51,476 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:19:53,483 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:19:55,496 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:19:57,506 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:19:59,517 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:20:01,527 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:20:03,541 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:20:05,551 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:20:07,562 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:20:09,572 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:20:11,582 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:20:13,593 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:20:15,603 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:20:17,614 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:20:19,624 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:20:21,634 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:20:23,645 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:20:25,655 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:20:27,666 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:20:29,676 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:20:31,686 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:20:33,696 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:20:35,706 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:20:37,717 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:20:39,727 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:20:41,737 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:20:43,747 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:20:45,757 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:20:47,767 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:20:49,777 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:20:51,290 | INFO | proceeding with final server update
[2024-10-23 22:21:08] 2024-10-24 02:20:51,291 | INFO | this job has now completed (state=failed)
[2024-10-23 22:21:08] 2024-10-24 02:20:51,291 | INFO | pilot will not update the server (heartbeat message will be written to file)
[2024-10-23 22:21:08] 2024-10-24 02:20:51,291 | INFO | log transfer has not been attempted: IN_PROGRESS
[2024-10-23 22:21:08] 2024-10-24 02:20:51,291 | INFO | job 6376788056 has state 'failed' - writing heartbeat
[2024-10-23 22:21:08] 2024-10-24 02:20:51,291 | INFO | payload/TRF did not report the number of read events
[2024-10-23 22:21:08] 2024-10-24 02:20:51,295 | INFO | executing command: lscpu
[2024-10-23 22:21:08] File "/tmp/boinchome/slots/8/pilot3/pilot/common/exception.py", line 466, in run
[2024-10-23 22:21:08] self._target(**self.kwargs)
[2024-10-23 22:21:08] File "/tmp/boinchome/slots/8/pilot3/pilot/control/job.py", line 2638, in queue_monitor
[2024-10-23 22:21:08] update_server(job, args)
[2024-10-23 22:21:08] File "/tmp/boinchome/slots/8/pilot3/pilot/control/job.py", line 2687, in update_server
[2024-10-23 22:21:08] send_state(job, args, job.state, metadata=metadata)
[2024-10-23 22:21:08] File "/tmp/boinchome/slots/8/pilot3/pilot/control/job.py", line 430, in send_state
[2024-10-23 22:21:08] data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2024-10-23 22:21:08] File "/tmp/boinchome/slots/8/pilot3/pilot/control/job.py", line 757, in get_data_structure
[2024-10-23 22:21:08] cpumodel = get_cpu_cores(cpumodel) # add the CPU cores if not present
[2024-10-23 22:21:08] File "/tmp/boinchome/slots/8/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores
[2024-10-23 22:21:08] ec, stdout = lscpu()
[2024-10-23 22:21:08] File "/tmp/boinchome/slots/8/pilot3/pilot/util/workernode.py", line 333, in lscpu
[2024-10-23 22:21:08] ec, stdout, _ = execute(cmd)
[2024-10-23 22:21:08] File "/tmp/boinchome/slots/8/pilot3/pilot/util/container.py", line 98, in execute
[2024-10-23 22:21:08] process = subprocess.Popen(exe,
[2024-10-23 22:21:08] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-10-23 22:21:08] self._execute_child(args, executable, preexec_fn, close_fds,
[2024-10-23 22:21:08] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-10-23 22:21:08] raise child_exception_type(errno_num, err_msg, err_filename)
[2024-10-23 22:21:08] unexpected exception caught by thread run() function: (<class 'OSError'>, OSError(107, 'Transport endpoint is not connected'), <traceback object at 0x7f2e641d6fc0>)
[2024-10-23 22:21:08] Traceback (most recent call last):
[2024-10-23 22:21:08] File "/tmp/boinchome/slots/8/pilot3/pilot/common/exception.py", line 466, in run
[2024-10-23 22:21:08] self._target(**self.kwargs)
[2024-10-23 22:21:08] File "/tmp/boinchome/slots/8/pilot3/pilot/control/job.py", line 2638, in queue_monitor
[2024-10-23 22:21:08] update_server(job, args)
[2024-10-23 22:21:08] File "/tmp/boinchome/slots/8/pilot3/pilot/control/job.py", line 2687, in update_server
[2024-10-23 22:21:08] send_state(job, args, job.state, metadata=metadata)
[2024-10-23 22:21:08] File "/tmp/boinchome/slots/8/pilot3/pilot/control/job.py", line 430, in send_state
[2024-10-23 22:21:08] data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2024-10-23 22:21:08] File "/tmp/boinchome/slots/8/pilot3/pilot/control/job.py", line 757, in get_data_structure
[2024-10-23 22:21:08] cpumodel = get_cpu_cores(cpumodel) # add the CPU cores if not present
[2024-10-23 22:21:08] File "/tmp/boinchome/slots/8/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores
[2024-10-23 22:21:08] ec, stdout = lscpu()
[2024-10-23 22:21:08] File "/tmp/boinchome/slots/8/pilot3/pilot/util/workernode.py", line 333, in lscpu
[2024-10-23 22:21:08] ec, stdout, _ = execute(cmd)
[2024-10-23 22:21:08] File "/tmp/boinchome/slots/8/pilot3/pilot/util/container.py", line 98, in execute
[2024-10-23 22:21:08] process = subprocess.Popen(exe,
[2024-10-23 22:21:08] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-10-23 22:21:08] self._execute_child(args, executable, preexec_fn, close_fds,
[2024-10-23 22:21:08] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-10-23 22:21:08] raise child_exception_type(errno_num, err_msg, err_filename)
[2024-10-23 22:21:08] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-10-23 22:21:08]
[2024-10-23 22:21:08] None
[2024-10-23 22:21:08] exception has been put in bucket queue belonging to thread 'queue_monitor'
[2024-10-23 22:21:08] setting graceful stop in 10 s since there is no point in continuing
[2024-10-23 22:21:08] 2024-10-24 02:20:51,787 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:20:53,797 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:20:55,807 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:20:57,817 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:20:59,823 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139837405546304)>', '<ExcThread(queue_monitor, started 139836635715328)>']
[2024-10-23 22:21:08] 2024-10-24 02:21:01,833 | INFO | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 139837405546304)>'])
[2024-10-23 22:21:08] 2024-10-24 02:21:06,858 | INFO | all workflow threads have been joined
[2024-10-23 22:21:08] 2024-10-24 02:21:06,858 | INFO | end of generic workflow (traces error code: 0)
[2024-10-23 22:21:08] 2024-10-24 02:21:06,858 | INFO | traces error code: 0
[2024-10-23 22:21:08] 2024-10-24 02:21:06,858 | INFO | pilot has finished (exit code=0, shell exit code=0)
[2024-10-23 22:21:08] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:21:08] ==== pilot stdout END ====
[2024-10-23 22:21:08] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:21:08] ==== wrapper stdout RESUME ====
[2024-10-23 22:21:08] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:21:08] pilotpid: 41960
[2024-10-23 22:21:08] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:21:08] Pilot exit status: 0
[2024-10-23 22:21:08] ./runpilot2-wrapper.sh: line 973: /usr/bin/cat: Transport endpoint is not connected
[2024-10-23 22:21:08] ./runpilot2-wrapper.sh: line 973: /usr/bin/xargs: Transport endpoint is not connected
[2024-10-23 22:21:08] ./runpilot2-wrapper.sh: line 973: /usr/bin/cut: Transport endpoint is not connected
[2024-10-23 22:21:08] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:21:08] pandaids:
[2024-10-23 22:21:08] ./runpilot2-wrapper.sh: line 511: /usr/bin/ps: Transport endpoint is not connected
[2024-10-23 22:21:08] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:21:08] No supervise_pilot CHILD process found
[2024-10-23 22:21:08] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:21:08] Test setup, not cleaning
[2024-10-23 22:21:08] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:21:08] ==== wrapper stdout END ====
[2024-10-23 22:21:08] ./runpilot2-wrapper.sh: line 10: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:21:08] ==== wrapper stderr END ====
[2024-10-23 22:21:08] ./runpilot2-wrapper.sh: line 532: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:21:08] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:21:08] apfmon messages muted
[2024-10-23 22:21:08] *** Error codes and diagnostics ***
[2024-10-23 22:21:08] *** Listing of results directory ***
[2024-10-23 22:21:08] total 383884
[2024-10-23 22:21:08] -rw-r--r-- 1 boincer umatlas 486088 Oct 23 17:01 pilot3.tar.gz
[2024-10-23 22:21:08] -rw-r--r-- 1 boincer umatlas 5654 Oct 23 17:10 queuedata.json
[2024-10-23 22:21:08] -rwx------ 1 boincer umatlas 33946 Oct 23 17:11 runpilot2-wrapper.sh
[2024-10-23 22:21:08] -rw-r--r-- 1 boincer umatlas 100 Oct 23 17:13 wrapper_26015_x86_64-pc-linux-gnu
[2024-10-23 22:21:08] -rwxr-xr-x 1 boincer umatlas 7986 Oct 23 17:13 run_atlas
[2024-10-23 22:21:08] -rw-r--r-- 1 boincer umatlas 105 Oct 23 17:13 job.xml
[2024-10-23 22:21:08] -rw-r--r-- 2 boincer umatlas 386376576 Oct 23 17:13 EVNT.41780262._000013.pool.root.1
[2024-10-23 22:21:08] -rw-r--r-- 2 boincer umatlas 17539 Oct 23 17:13 start_atlas.sh
[2024-10-23 22:21:08] drwxrwx--x 2 boincer umatlas 4096 Oct 23 17:13 shared
[2024-10-23 22:21:08] -rw-r--r-- 2 boincer umatlas 499790 Oct 23 17:13 input.tar.gz
[2024-10-23 22:21:08] -rw-r--r-- 1 boincer umatlas 0 Oct 23 17:13 boinc_lockfile
[2024-10-23 22:21:08] -rw-r--r-- 1 boincer umatlas 2886 Oct 23 17:13 pandaJob.out
[2024-10-23 22:21:08] -rw------- 1 boincer umatlas 424 Oct 23 17:13 setup.sh.local
[2024-10-23 22:21:08] -rw------- 1 boincer umatlas 1025434 Oct 23 17:13 agis_schedconf.cvmfs.json
[2024-10-23 22:21:08] -rw------- 1 boincer umatlas 1611897 Oct 23 17:13 agis_ddmendpoints.agis.ALL.json
[2024-10-23 22:21:08] drwx------ 4 boincer umatlas 4096 Oct 23 17:13 pilot3
[2024-10-23 22:21:08] -rw------- 1 boincer umatlas 907 Oct 23 21:53 heartbeat.json
[2024-10-23 22:21:08] -rw-r--r-- 1 boincer umatlas 6302 Oct 23 22:12 init_data.xml
[2024-10-23 22:21:08] -rw------- 1 boincer umatlas 95 Oct 23 22:17 pilot_heartbeat.json
[2024-10-23 22:21:08] -rw-r--r-- 1 boincer umatlas 531 Oct 23 22:18 boinc_task_state.xml
[2024-10-23 22:21:08] -rw------- 1 boincer umatlas 1086 Oct 23 22:18 memory_monitor_summary.json
[2024-10-23 22:21:08] drwxrwx--- 3 boincer umatlas 4096 Oct 23 22:18 PanDA_Pilot-6376788056
[2024-10-23 22:21:08] -rw-r--r-- 1 boincer umatlas 28 Oct 23 22:21 wrapper_checkpoint.txt
[2024-10-23 22:21:08] -rw-r--r-- 1 boincer umatlas 8192 Oct 23 22:21 boinc_mmap_file
[2024-10-23 22:21:08] -rw------- 1 boincer umatlas 1428205 Oct 23 22:21 pilotlog.txt
[2024-10-23 22:21:08] -rw------- 1 boincer umatlas 1455804 Oct 23 22:21 log.41780268._000177.job.log.1
[2024-10-23 22:21:08] -rw-r--r-- 1 boincer umatlas 428 Oct 23 22:21 runtime_log
[2024-10-23 22:21:08] -rw------- 1 boincer umatlas 628 Oct 23 22:21 SSPODm9oxN6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmhMXLDmSjwHln.diag
[2024-10-23 22:21:08] -rw-r--r-- 1 boincer umatlas 11290 Oct 23 22:21 runtime_log.err
[2024-10-23 22:21:08] -rw-r--r-- 1 boincer umatlas 28011 Oct 23 22:21 stderr.txt
[2024-10-23 22:21:08] No HITS result produced
[2024-10-23 22:21:08] *** Contents of shared directory: ***
[2024-10-23 22:21:08] total 377836
[2024-10-23 22:21:08] -rw-r--r-- 2 boincer umatlas 386376576 Oct 23 17:13 ATLAS.root_0
[2024-10-23 22:21:08] -rw-r--r-- 2 boincer umatlas 17539 Oct 23 17:13 start_atlas.sh
[2024-10-23 22:21:08] -rw-r--r-- 2 boincer umatlas 499790 Oct 23 17:13 input.tar.gz
22:21:09 (80524): run_atlas exited; CPU time 4218.991816
22:21:09 (80524): called boinc_finish(0)
</stderr_txt>
<message>
upload failure: <file_xfer_error>
<file_name>SSPODm9oxN6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmhMXLDmSjwHln_0_r674074264_ATLAS_result</file_name>
<error_code>-161 (not found)</error_code>
</file_xfer_error>
</message>
]]>
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