| Name | KjZLDm4oxN6n7OlckoGmwREmGgkVDo1bjSoqOlfODm0SALDm4gZGNo_0 |
| Workunit | 226248651 |
| Created | 23 Oct 2024, 21:12:01 UTC |
| Sent | 23 Oct 2024, 21:12:08 UTC |
| Report deadline | 31 Oct 2024, 21:12:08 UTC |
| Received | 24 Oct 2024, 2:22:37 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 0 (0x00000000) |
| Computer ID | 10830555 |
| Run time | 5 hours 9 min 27 sec |
| CPU time | 7 hours 13 min 44 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 41.61 GFLOPS |
| Application version | ATLAS Simulation v3.01 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.57 GB |
| Peak swap size | 31.71 GB |
| Peak disk usage | 847.52 MB |
Stderr output
<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:12:43 (46205): wrapper (7.7.26015): starting
17:12:43 (46205): wrapper: running run_atlas (--nthreads 8)
[2024-10-23 17:12:43] Arguments: --nthreads 8
[2024-10-23 17:12:43] Threads: 8
[2024-10-23 17:12:43] Checking for CVMFS
[2024-10-23 17:12:43] Probing /cvmfs/atlas.cern.ch... OK
[2024-10-23 17:12:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-10-23 17:12:43] Running cvmfs_config stat atlas.cern.ch
[2024-10-23 17:12:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-10-23 17:12:44] 2.11.2.0 2015 44 91128 138665 3 182 16592401 18432000 18001 130560 0 1665730 98.297 5632629 36867 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2024-10-23 17:12:44] CVMFS is ok
[2024-10-23 17:12:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-10-23 17:12:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-10-23 17:12:44] Further information can be found at the LHC@home message board.
[2024-10-23 17:12:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-10-23 17:12:44] Checking for apptainer binary...
[2024-10-23 17:12:44] Using apptainer found in PATH at /usr/bin/apptainer
[2024-10-23 17:12:44] Running /usr/bin/apptainer --version
[2024-10-23 17:12:44] apptainer version 1.3.2-1.el7
[2024-10-23 17:12:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-10-23 17:12:48] c-212-15.aglt2.org
[2024-10-23 17:12:48] apptainer works
[2024-10-23 17:12:48] Set ATHENA_PROC_NUMBER=8
[2024-10-23 17:12:48] Set ATHENA_CORE_NUMBER=8
[2024-10-23 17:12:48] Starting ATLAS job with PandaID=6376785235
[2024-10-23 17:12:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-10-23 22:22:07] *** The last 200 lines of the pilot log: ***
[2024-10-23 22:22:07] 2024-10-24 02:19:45,542 | WARNING | Exception caught: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-10-23 22:22:07] 2024-10-24 02:19:45,542 | WARNING | Traceback (most recent call last):
[2024-10-23 22:22:07] File "/tmp/boinchome/slots/2/pilot3/pilot/util/monitoring.py", line 109, in job_monitor_tasks
[2024-10-23 22:22:07] cpuconsumptiontime = get_current_cpu_consumption_time(job.pid)
[2024-10-23 22:22:07] File "/tmp/boinchome/slots/2/pilot3/pilot/util/processes.py", line 600, in get_current_cpu_consumption_time
[2024-10-23 22:22:07] _, ps_cache, _ = execute("ps -eo pid,ppid -m", mute=True, timeout=60)
[2024-10-23 22:22:07] File "/tmp/boinchome/slots/2/pilot3/pilot/util/container.py", line 98, in execute
[2024-10-23 22:22:07] process = subprocess.Popen(exe,
[2024-10-23 22:22:07] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-10-23 22:22:07] self._execute_child(args, executable, preexec_fn, close_fds,
[2024-10-23 22:22:07] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-10-23 22:22:07] raise child_exception_type(errno_num, err_msg, err_filename)
[2024-10-23 22:22:07] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-10-23 22:22:07]
[2024-10-23 22:22:07] 2024-10-24 02:19:45,543 | WARNING | will send preliminary diagnostics (and pretend job is still running)=Exception caught: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-10-23 22:22:07] 2024-10-24 02:19:45,543 | INFO | pilot will not update the server (heartbeat message will be written to file)
[2024-10-23 22:22:07] 2024-10-24 02:19:45,543 | INFO | log transfer has not been attempted: IN_PROGRESS
[2024-10-23 22:22:07] 2024-10-24 02:19:45,543 | INFO | job 6376785235 has state 'running' - writing heartbeat
[2024-10-23 22:22:07] 2024-10-24 02:19:45,543 | INFO | payload/TRF did not report the number of read events
[2024-10-23 22:22:07] 2024-10-24 02:19:45,547 | INFO | executing command: lscpu
[2024-10-23 22:22:07] 2024-10-24 02:19:45,555 | WARNING | exception caught: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-10-23 22:22:07] 2024-10-24 02:19:48,058 | INFO | monitor loop #1113: job 0:6376785235 is in state 'failed'
[2024-10-23 22:22:07] 2024-10-24 02:19:48,058 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2024-10-23 22:22:07] 2024-10-24 02:19:50,561 | INFO | monitor loop #1114: job 0:6376785235 is in state 'failed'
[2024-10-23 22:22:07] 2024-10-24 02:19:50,561 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2024-10-23 22:22:07] 2024-10-24 02:19:53,064 | INFO | monitor loop #1115: job 0:6376785235 is in state 'failed'
[2024-10-23 22:22:07] 2024-10-24 02:19:53,064 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2024-10-23 22:22:07] 2024-10-24 02:19:53,437 | WARNING | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-10-23 22:22:07] 2024-10-24 02:19:53,437 | WARNING | job:job_monitor:received graceful stop - abort after this iteration
[2024-10-23 22:22:07] 2024-10-24 02:19:53,438 | INFO | will abort loop
[2024-10-23 22:22:07] 2024-10-24 02:19:53,844 | INFO | all job control threads have been joined
[2024-10-23 22:22:07] 2024-10-24 02:19:53,888 | INFO | found 1 job(s) in 20 queues
[2024-10-23 22:22:07] 2024-10-24 02:19:53,888 | INFO | aborting job 6376785235
[2024-10-23 22:22:07] 2024-10-24 02:19:53,888 | WARNING | could not find signal name for signal number None - using SIGTERM
[2024-10-23 22:22:07] 2024-10-24 02:19:53,923 | WARNING | pilot monitor received instruction that args.graceful_stop has been set
[2024-10-23 22:22:07] 2024-10-24 02:19:53,923 | INFO | job 6376785235 has state=failed
[2024-10-23 22:22:07] 2024-10-24 02:19:53,923 | WARNING | will wait for a maximum of 300 s for threads to finish
[2024-10-23 22:22:07] 2024-10-24 02:19:53,923 | INFO | preparing for final server update for job 6376785235 in state='failed'
[2024-10-23 22:22:07] 2024-10-24 02:19:53,924 | WARNING | job_aborted has been set - aborting pilot monitoring
[2024-10-23 22:22:07] 2024-10-24 02:19:53,924 | INFO | [monitor] control thread has ended
[2024-10-23 22:22:07] 2024-10-24 02:19:54,354 | INFO | all payload control threads have been joined
[2024-10-23 22:22:07] 2024-10-24 02:19:54,383 | INFO | all data control threads have been joined
[2024-10-23 22:22:07] 2024-10-24 02:19:54,444 | INFO | [job] job monitor thread has finished
[2024-10-23 22:22:07] 2024-10-24 02:19:54,615 | INFO | [data] copytool_in thread has finished
[2024-10-23 22:22:07] 2024-10-24 02:19:54,839 | INFO | [job] create_data_payload thread has finished
[2024-10-23 22:22:07] 2024-10-24 02:19:54,842 | INFO | [payload] validate_pre thread has finished
[2024-10-23 22:22:07] 2024-10-24 02:19:54,849 | INFO | [job] control thread has finished
[2024-10-23 22:22:07] 2024-10-24 02:19:54,865 | INFO | [payload] failed_post thread has finished
[2024-10-23 22:22:07] 2024-10-24 02:19:54,988 | INFO | [payload] run_realtimelog thread has finished
[2024-10-23 22:22:07] 2024-10-24 02:19:55,022 | INFO | [payload] validate_post thread has finished
[2024-10-23 22:22:07] 2024-10-24 02:19:55,035 | INFO | [job] validate thread has finished
[2024-10-23 22:22:07] 2024-10-24 02:19:55,347 | INFO | [job] retrieve thread has finished
[2024-10-23 22:22:07] 2024-10-24 02:19:55,360 | INFO | [payload] control thread has finished
[2024-10-23 22:22:07] 2024-10-24 02:19:55,388 | INFO | [data] control thread has finished
[2024-10-23 22:22:07] 2024-10-24 02:19:57,440 | INFO | [data] queue_monitor thread has finished
[2024-10-23 22:22:07] 2024-10-24 02:19:58,685 | INFO | [payload] execute_payloads thread has finished
[2024-10-23 22:22:07] 2024-10-24 02:20:00,484 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:20:02,494 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:20:04,504 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:20:06,514 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:20:08,524 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:20:10,534 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:20:12,544 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:20:14,554 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:20:16,564 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:20:18,574 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:20:20,584 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:20:22,594 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:20:24,604 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:20:26,615 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:20:28,625 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:20:30,635 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:20:32,646 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:20:34,656 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:20:36,666 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:20:38,677 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:20:40,687 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:20:42,697 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:20:44,707 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:20:46,717 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:20:48,728 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:20:50,738 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:20:52,748 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:20:54,758 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:20:56,768 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:20:58,778 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:21:00,789 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:21:02,800 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:21:04,810 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:21:06,821 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:21:08,831 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:21:10,839 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:21:12,846 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:21:14,856 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:21:16,866 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:21:18,876 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:21:20,885 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:21:22,895 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:21:24,905 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:21:26,915 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:21:28,922 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:21:30,932 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:21:32,942 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:21:34,952 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:21:36,962 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:21:38,972 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:21:40,982 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:21:42,992 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:21:45,002 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:21:47,012 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:21:49,022 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:21:49,404 | INFO | proceeding with final server update
[2024-10-23 22:22:07] 2024-10-24 02:21:49,405 | INFO | this job has now completed (state=failed)
[2024-10-23 22:22:07] 2024-10-24 02:21:49,405 | INFO | pilot will not update the server (heartbeat message will be written to file)
[2024-10-23 22:22:07] 2024-10-24 02:21:49,405 | INFO | log transfer has not been attempted: IN_PROGRESS
[2024-10-23 22:22:07] 2024-10-24 02:21:49,405 | INFO | job 6376785235 has state 'failed' - writing heartbeat
[2024-10-23 22:22:07] 2024-10-24 02:21:49,405 | INFO | payload/TRF did not report the number of read events
[2024-10-23 22:22:07] 2024-10-24 02:21:49,409 | INFO | executing command: lscpu
[2024-10-23 22:22:07] File "/tmp/boinchome/slots/2/pilot3/pilot/common/exception.py", line 466, in run
[2024-10-23 22:22:07] self._target(**self.kwargs)
[2024-10-23 22:22:07] File "/tmp/boinchome/slots/2/pilot3/pilot/control/job.py", line 2638, in queue_monitor
[2024-10-23 22:22:07] update_server(job, args)
[2024-10-23 22:22:07] File "/tmp/boinchome/slots/2/pilot3/pilot/control/job.py", line 2687, in update_server
[2024-10-23 22:22:07] send_state(job, args, job.state, metadata=metadata)
[2024-10-23 22:22:07] File "/tmp/boinchome/slots/2/pilot3/pilot/control/job.py", line 430, in send_state
[2024-10-23 22:22:07] data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2024-10-23 22:22:07] File "/tmp/boinchome/slots/2/pilot3/pilot/control/job.py", line 757, in get_data_structure
[2024-10-23 22:22:07] cpumodel = get_cpu_cores(cpumodel) # add the CPU cores if not present
[2024-10-23 22:22:07] File "/tmp/boinchome/slots/2/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores
[2024-10-23 22:22:07] ec, stdout = lscpu()
[2024-10-23 22:22:07] File "/tmp/boinchome/slots/2/pilot3/pilot/util/workernode.py", line 333, in lscpu
[2024-10-23 22:22:07] ec, stdout, _ = execute(cmd)
[2024-10-23 22:22:07] File "/tmp/boinchome/slots/2/pilot3/pilot/util/container.py", line 98, in execute
[2024-10-23 22:22:07] process = subprocess.Popen(exe,
[2024-10-23 22:22:07] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-10-23 22:22:07] self._execute_child(args, executable, preexec_fn, close_fds,
[2024-10-23 22:22:07] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-10-23 22:22:07] raise child_exception_type(errno_num, err_msg, err_filename)
[2024-10-23 22:22:07] unexpected exception caught by thread run() function: (<class 'OSError'>, OSError(107, 'Transport endpoint is not connected'), <traceback object at 0x7f49084b39c0>)
[2024-10-23 22:22:07] Traceback (most recent call last):
[2024-10-23 22:22:07] File "/tmp/boinchome/slots/2/pilot3/pilot/common/exception.py", line 466, in run
[2024-10-23 22:22:07] self._target(**self.kwargs)
[2024-10-23 22:22:07] File "/tmp/boinchome/slots/2/pilot3/pilot/control/job.py", line 2638, in queue_monitor
[2024-10-23 22:22:07] update_server(job, args)
[2024-10-23 22:22:07] File "/tmp/boinchome/slots/2/pilot3/pilot/control/job.py", line 2687, in update_server
[2024-10-23 22:22:07] send_state(job, args, job.state, metadata=metadata)
[2024-10-23 22:22:07] File "/tmp/boinchome/slots/2/pilot3/pilot/control/job.py", line 430, in send_state
[2024-10-23 22:22:07] data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2024-10-23 22:22:07] File "/tmp/boinchome/slots/2/pilot3/pilot/control/job.py", line 757, in get_data_structure
[2024-10-23 22:22:07] cpumodel = get_cpu_cores(cpumodel) # add the CPU cores if not present
[2024-10-23 22:22:07] File "/tmp/boinchome/slots/2/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores
[2024-10-23 22:22:07] ec, stdout = lscpu()
[2024-10-23 22:22:07] File "/tmp/boinchome/slots/2/pilot3/pilot/util/workernode.py", line 333, in lscpu
[2024-10-23 22:22:07] ec, stdout, _ = execute(cmd)
[2024-10-23 22:22:07] File "/tmp/boinchome/slots/2/pilot3/pilot/util/container.py", line 98, in execute
[2024-10-23 22:22:07] process = subprocess.Popen(exe,
[2024-10-23 22:22:07] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-10-23 22:22:07] self._execute_child(args, executable, preexec_fn, close_fds,
[2024-10-23 22:22:07] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-10-23 22:22:07] raise child_exception_type(errno_num, err_msg, err_filename)
[2024-10-23 22:22:07] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-10-23 22:22:07]
[2024-10-23 22:22:07] None
[2024-10-23 22:22:07] exception has been put in bucket queue belonging to thread 'queue_monitor'
[2024-10-23 22:22:07] setting graceful stop in 10 s since there is no point in continuing
[2024-10-23 22:22:07] 2024-10-24 02:21:51,032 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:21:53,040 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:21:55,046 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:21:57,056 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:21:59,066 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139951925544768)>', '<ExcThread(queue_monitor, started 139951031183104)>']
[2024-10-23 22:22:07] 2024-10-24 02:22:01,076 | INFO | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 139951925544768)>'])
[2024-10-23 22:22:07] 2024-10-24 02:22:06,101 | INFO | all workflow threads have been joined
[2024-10-23 22:22:07] 2024-10-24 02:22:06,101 | INFO | end of generic workflow (traces error code: 0)
[2024-10-23 22:22:07] 2024-10-24 02:22:06,101 | INFO | traces error code: 0
[2024-10-23 22:22:07] 2024-10-24 02:22:06,101 | INFO | pilot has finished (exit code=0, shell exit code=0)
[2024-10-23 22:22:07] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:22:07] ==== pilot stdout END ====
[2024-10-23 22:22:07] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:22:07] ==== wrapper stdout RESUME ====
[2024-10-23 22:22:07] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:22:07] pilotpid: 10930
[2024-10-23 22:22:07] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:22:07] Pilot exit status: 0
[2024-10-23 22:22:07] ./runpilot2-wrapper.sh: line 973: /usr/bin/xargs: Transport endpoint is not connected
[2024-10-23 22:22:07] ./runpilot2-wrapper.sh: line 973: /usr/bin/cat: Transport endpoint is not connected
[2024-10-23 22:22:07] ./runpilot2-wrapper.sh: line 973: /usr/bin/cut: Transport endpoint is not connected
[2024-10-23 22:22:07] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:22:07] pandaids:
[2024-10-23 22:22:07] ./runpilot2-wrapper.sh: line 511: /usr/bin/ps: Transport endpoint is not connected
[2024-10-23 22:22:07] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:22:07] No supervise_pilot CHILD process found
[2024-10-23 22:22:07] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:22:07] Test setup, not cleaning
[2024-10-23 22:22:07] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:22:07] ==== wrapper stdout END ====
[2024-10-23 22:22:07] ./runpilot2-wrapper.sh: line 10: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:22:07] ==== wrapper stderr END ====
[2024-10-23 22:22:07] ./runpilot2-wrapper.sh: line 532: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:22:07] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:22:07] apfmon messages muted
[2024-10-23 22:22:07] *** Error codes and diagnostics ***
[2024-10-23 22:22:07] *** Listing of results directory ***
[2024-10-23 22:22:07] total 384404
[2024-10-23 22:22:07] -rw-r--r-- 1 boincer umatlas 486088 Oct 23 17:01 pilot3.tar.gz
[2024-10-23 22:22:07] -rw-r--r-- 1 boincer umatlas 5654 Oct 23 17:10 queuedata.json
[2024-10-23 22:22:07] -rwx------ 1 boincer umatlas 33946 Oct 23 17:11 runpilot2-wrapper.sh
[2024-10-23 22:22:07] -rw-r--r-- 1 boincer umatlas 100 Oct 23 17:12 wrapper_26015_x86_64-pc-linux-gnu
[2024-10-23 22:22:07] -rwxr-xr-x 1 boincer umatlas 7986 Oct 23 17:12 run_atlas
[2024-10-23 22:22:07] -rw-r--r-- 1 boincer umatlas 105 Oct 23 17:12 job.xml
[2024-10-23 22:22:07] -rw-r--r-- 2 boincer umatlas 386801072 Oct 23 17:12 EVNT.41780282._000013.pool.root.1
[2024-10-23 22:22:07] -rw-r--r-- 2 boincer umatlas 17539 Oct 23 17:12 start_atlas.sh
[2024-10-23 22:22:07] drwxrwx--x 2 boincer umatlas 4096 Oct 23 17:12 shared
[2024-10-23 22:22:07] -rw-r--r-- 2 boincer umatlas 499792 Oct 23 17:12 input.tar.gz
[2024-10-23 22:22:07] -rw-r--r-- 1 boincer umatlas 0 Oct 23 17:12 boinc_lockfile
[2024-10-23 22:22:07] -rw-r--r-- 1 boincer umatlas 2892 Oct 23 17:12 pandaJob.out
[2024-10-23 22:22:07] -rw------- 1 boincer umatlas 424 Oct 23 17:12 setup.sh.local
[2024-10-23 22:22:07] -rw------- 1 boincer umatlas 1025434 Oct 23 17:13 agis_schedconf.cvmfs.json
[2024-10-23 22:22:07] -rw------- 1 boincer umatlas 1611897 Oct 23 17:13 agis_ddmendpoints.agis.ALL.json
[2024-10-23 22:22:07] drwx------ 4 boincer umatlas 4096 Oct 23 17:13 pilot3
[2024-10-23 22:22:07] -rw------- 1 boincer umatlas 904 Oct 23 21:52 heartbeat.json
[2024-10-23 22:22:07] -rw-r--r-- 1 boincer umatlas 6302 Oct 23 22:12 init_data.xml
[2024-10-23 22:22:07] -rw------- 1 boincer umatlas 95 Oct 23 22:19 pilot_heartbeat.json
[2024-10-23 22:22:07] -rw-r--r-- 1 boincer umatlas 531 Oct 23 22:19 boinc_task_state.xml
[2024-10-23 22:22:07] -rw------- 1 boincer umatlas 1084 Oct 23 22:19 memory_monitor_summary.json
[2024-10-23 22:22:07] drwxrwx--- 3 boincer umatlas 4096 Oct 23 22:19 PanDA_Pilot-6376785235
[2024-10-23 22:22:07] -rw-r--r-- 1 boincer umatlas 8192 Oct 23 22:21 boinc_mmap_file
[2024-10-23 22:22:07] -rw-r--r-- 1 boincer umatlas 28 Oct 23 22:21 wrapper_checkpoint.txt
[2024-10-23 22:22:07] -rw------- 1 boincer umatlas 1481889 Oct 23 22:22 pilotlog.txt
[2024-10-23 22:22:07] -rw------- 1 boincer umatlas 1509488 Oct 23 22:22 log.41780286._000165.job.log.1
[2024-10-23 22:22:07] -rw-r--r-- 1 boincer umatlas 428 Oct 23 22:22 runtime_log
[2024-10-23 22:22:07] -rw------- 1 boincer umatlas 627 Oct 23 22:22 KjZLDm4oxN6n7OlckoGmwREmGgkVDo1bjSoqOlfODm0SALDm4gZGNo.diag
[2024-10-23 22:22:07] -rw-r--r-- 1 boincer umatlas 11290 Oct 23 22:22 runtime_log.err
[2024-10-23 22:22:07] -rw-r--r-- 1 boincer umatlas 28096 Oct 23 22:22 stderr.txt
[2024-10-23 22:22:07] No HITS result produced
[2024-10-23 22:22:07] *** Contents of shared directory: ***
[2024-10-23 22:22:07] total 378252
[2024-10-23 22:22:07] -rw-r--r-- 2 boincer umatlas 386801072 Oct 23 17:12 ATLAS.root_0
[2024-10-23 22:22:07] -rw-r--r-- 2 boincer umatlas 17539 Oct 23 17:12 start_atlas.sh
[2024-10-23 22:22:07] -rw-r--r-- 2 boincer umatlas 499792 Oct 23 17:12 input.tar.gz
22:22:08 (46205): run_atlas exited; CPU time 4063.086663
22:22:08 (46205): called boinc_finish(0)
</stderr_txt>
<message>
upload failure: <file_xfer_error>
<file_name>KjZLDm4oxN6n7OlckoGmwREmGgkVDo1bjSoqOlfODm0SALDm4gZGNo_0_r767213122_ATLAS_result</file_name>
<error_code>-161 (not found)</error_code>
</file_xfer_error>
</message>
]]>
©2024 CERN