| Name | uzVLDm4oxN6n7OlckoGmwREmGgkVDo1bjSoqOlfODmzSALDmNvoHwm_0 |
| Workunit | 226248650 |
| Created | 23 Oct 2024, 21:12:01 UTC |
| Sent | 23 Oct 2024, 21:12:08 UTC |
| Report deadline | 31 Oct 2024, 21:12:08 UTC |
| Received | 24 Oct 2024, 2:22:37 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 0 (0x00000000) |
| Computer ID | 10830555 |
| Run time | 5 hours 7 min 44 sec |
| CPU time | 7 hours 26 min 40 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 41.61 GFLOPS |
| Application version | ATLAS Simulation v3.01 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.57 GB |
| Peak swap size | 2.18 GB |
| Peak disk usage | 837.99 MB |
Stderr output
<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:12:47 (51442): wrapper (7.7.26015): starting
17:12:47 (51442): wrapper: running run_atlas (--nthreads 8)
[2024-10-23 17:12:47] Arguments: --nthreads 8
[2024-10-23 17:12:47] Threads: 8
[2024-10-23 17:12:47] Checking for CVMFS
[2024-10-23 17:12:47] Probing /cvmfs/atlas.cern.ch... OK
[2024-10-23 17:12:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-10-23 17:12:47] Running cvmfs_config stat atlas.cern.ch
[2024-10-23 17:12:48] /usr/bin/cvmfs_config: line 944: cd: /cvmfs/ligo.storage.igwn.org: Permission denied
[2024-10-23 17:12:48]
[2024-10-23 17:12:48] CVMFS is ok
[2024-10-23 17:12:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-10-23 17:12:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-10-23 17:12:48] Further information can be found at the LHC@home message board.
[2024-10-23 17:12:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-10-23 17:12:48] Checking for apptainer binary...
[2024-10-23 17:12:48] Using apptainer found in PATH at /usr/bin/apptainer
[2024-10-23 17:12:48] Running /usr/bin/apptainer --version
[2024-10-23 17:12:48] apptainer version 1.3.2-1.el7
[2024-10-23 17:12:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-10-23 17:12:49] c-212-15.aglt2.org
[2024-10-23 17:12:49] apptainer works
[2024-10-23 17:12:49] Set ATHENA_PROC_NUMBER=8
[2024-10-23 17:12:49] Set ATHENA_CORE_NUMBER=8
[2024-10-23 17:12:49] Starting ATLAS job with PandaID=6376785229
[2024-10-23 17:12:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-10-23 22:20:27] *** The last 200 lines of the pilot log: ***
[2024-10-23 22:20:27] File "/tmp/boinchome/slots/7/pilot3/pilot/util/monitoring.py", line 109, in job_monitor_tasks
[2024-10-23 22:20:27] cpuconsumptiontime = get_current_cpu_consumption_time(job.pid)
[2024-10-23 22:20:27] File "/tmp/boinchome/slots/7/pilot3/pilot/util/processes.py", line 600, in get_current_cpu_consumption_time
[2024-10-23 22:20:27] _, ps_cache, _ = execute("ps -eo pid,ppid -m", mute=True, timeout=60)
[2024-10-23 22:20:27] File "/tmp/boinchome/slots/7/pilot3/pilot/util/container.py", line 98, in execute
[2024-10-23 22:20:27] process = subprocess.Popen(exe,
[2024-10-23 22:20:27] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-10-23 22:20:27] self._execute_child(args, executable, preexec_fn, close_fds,
[2024-10-23 22:20:27] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-10-23 22:20:27] raise child_exception_type(errno_num, err_msg, err_filename)
[2024-10-23 22:20:27] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-10-23 22:20:27]
[2024-10-23 22:20:27] 2024-10-24 02:17:48,237 | WARNING | will send preliminary diagnostics (and pretend job is still running)=Exception caught: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-10-23 22:20:27] 2024-10-24 02:17:48,237 | INFO | pilot will not update the server (heartbeat message will be written to file)
[2024-10-23 22:20:27] 2024-10-24 02:17:48,237 | INFO | log transfer has not been attempted: IN_PROGRESS
[2024-10-23 22:20:27] 2024-10-24 02:17:48,238 | INFO | job 6376785229 has state 'running' - writing heartbeat
[2024-10-23 22:20:27] 2024-10-24 02:17:48,238 | INFO | payload/TRF did not report the number of read events
[2024-10-23 22:20:27] 2024-10-24 02:17:48,246 | INFO | executing command: lscpu
[2024-10-23 22:20:27] 2024-10-24 02:17:48,271 | WARNING | exception caught: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-10-23 22:20:27] 2024-10-24 02:17:50,784 | INFO | monitor loop #1103: job 0:6376785229 is in state 'failed'
[2024-10-23 22:20:27] 2024-10-24 02:17:50,784 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2024-10-23 22:20:27] 2024-10-24 02:17:53,290 | INFO | monitor loop #1104: job 0:6376785229 is in state 'failed'
[2024-10-23 22:20:27] 2024-10-24 02:17:53,290 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2024-10-23 22:20:27] 2024-10-24 02:17:53,941 | WARNING | job:job_monitor:received graceful stop - abort after this iteration
[2024-10-23 22:20:27] 2024-10-24 02:17:53,941 | INFO | will abort loop
[2024-10-23 22:20:27] 2024-10-24 02:17:54,168 | INFO | found 1 job(s) in 20 queues
[2024-10-23 22:20:27] 2024-10-24 02:17:54,168 | INFO | aborting job 6376785229
[2024-10-23 22:20:27] 2024-10-24 02:17:54,169 | WARNING | could not find signal name for signal number None - using SIGTERM
[2024-10-23 22:20:27] 2024-10-24 02:17:54,256 | WARNING | pilot monitor received instruction that args.graceful_stop has been set
[2024-10-23 22:20:27] 2024-10-24 02:17:54,265 | WARNING | will wait for a maximum of 300 s for threads to finish
[2024-10-23 22:20:27] 2024-10-24 02:17:54,294 | INFO | all data control threads have been joined
[2024-10-23 22:20:27] 2024-10-24 02:17:54,539 | INFO | all job control threads have been joined
[2024-10-23 22:20:27] 2024-10-24 02:17:54,555 | INFO | all payload control threads have been joined
[2024-10-23 22:20:27] 2024-10-24 02:17:54,851 | WARNING | job:queue_monitor:received graceful stop - abort after this iteration
[2024-10-23 22:20:27] 2024-10-24 02:17:54,851 | WARNING | since job:queue_monitor is responsible for sending job updates, we sleep for 20 s
[2024-10-23 22:20:27] 2024-10-24 02:17:54,946 | INFO | [job] job monitor thread has finished
[2024-10-23 22:20:27] 2024-10-24 02:17:55,301 | INFO | [data] control thread has finished
[2024-10-23 22:20:27] 2024-10-24 02:17:55,422 | INFO | [job] validate thread has finished
[2024-10-23 22:20:27] 2024-10-24 02:17:55,422 | INFO | [job] create_data_payload thread has finished
[2024-10-23 22:20:27] 2024-10-24 02:17:55,517 | INFO | [payload] validate_post thread has finished
[2024-10-23 22:20:27] 2024-10-24 02:17:55,544 | INFO | [job] control thread has finished
[2024-10-23 22:20:27] 2024-10-24 02:17:55,560 | INFO | [payload] control thread has finished
[2024-10-23 22:20:27] 2024-10-24 02:17:55,926 | INFO | [job] retrieve thread has finished
[2024-10-23 22:20:27] 2024-10-24 02:17:56,051 | INFO | [payload] run_realtimelog thread has finished
[2024-10-23 22:20:27] 2024-10-24 02:17:56,074 | INFO | [payload] failed_post thread has finished
[2024-10-23 22:20:27] 2024-10-24 02:17:56,361 | INFO | [payload] validate_pre thread has finished
[2024-10-23 22:20:27] 2024-10-24 02:17:56,422 | INFO | [data] copytool_in thread has finished
[2024-10-23 22:20:27] 2024-10-24 02:17:57,325 | WARNING | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-10-23 22:20:27] 2024-10-24 02:17:59,343 | INFO | [payload] execute_payloads thread has finished
[2024-10-23 22:20:27] 2024-10-24 02:18:01,333 | INFO | [data] queue_monitor thread has finished
[2024-10-23 22:20:27] 2024-10-24 02:18:15,952 | INFO | job 6376785229 has state=failed
[2024-10-23 22:20:27] 2024-10-24 02:18:15,952 | INFO | preparing for final server update for job 6376785229 in state='failed'
[2024-10-23 22:20:27] 2024-10-24 02:18:16,411 | WARNING | job_aborted has been set - aborting pilot monitoring
[2024-10-23 22:20:27] 2024-10-24 02:18:16,411 | INFO | [monitor] control thread has ended
[2024-10-23 22:20:27] 2024-10-24 02:18:16,694 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:18:18,704 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:18:20,716 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:18:22,727 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:18:24,737 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:18:26,747 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:18:28,757 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:18:30,767 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:18:32,777 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:18:34,788 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:18:36,798 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:18:38,811 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:18:40,823 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:18:42,837 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:18:44,847 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:18:46,861 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:18:48,872 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:18:50,882 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:18:52,892 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:18:54,903 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:18:56,913 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:18:58,924 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:19:00,936 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:19:02,946 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:19:04,956 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:19:06,966 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:19:08,974 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:19:10,984 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:19:12,994 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:19:15,004 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:19:17,011 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:19:19,022 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:19:21,032 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:19:23,042 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:19:25,052 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:19:27,062 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:19:29,072 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:19:31,082 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:19:33,092 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:19:35,102 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:19:37,112 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:19:39,122 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:19:41,132 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:19:43,143 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:19:45,153 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:19:47,163 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:19:49,173 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:19:51,186 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:19:53,197 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:19:55,207 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:19:57,217 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:19:59,227 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:20:01,233 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:20:03,243 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:20:05,253 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:20:07,263 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:20:09,273 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:20:10,982 | INFO | proceeding with final server update
[2024-10-23 22:20:27] 2024-10-24 02:20:10,982 | INFO | this job has now completed (state=failed)
[2024-10-23 22:20:27] 2024-10-24 02:20:10,982 | INFO | pilot will not update the server (heartbeat message will be written to file)
[2024-10-23 22:20:27] 2024-10-24 02:20:10,983 | INFO | log transfer has not been attempted: IN_PROGRESS
[2024-10-23 22:20:27] 2024-10-24 02:20:10,983 | INFO | job 6376785229 has state 'failed' - writing heartbeat
[2024-10-23 22:20:27] 2024-10-24 02:20:10,983 | INFO | payload/TRF did not report the number of read events
[2024-10-23 22:20:27] 2024-10-24 02:20:10,986 | INFO | executing command: lscpu
[2024-10-23 22:20:27] File "/tmp/boinchome/slots/7/pilot3/pilot/common/exception.py", line 466, in run
[2024-10-23 22:20:27] self._target(**self.kwargs)
[2024-10-23 22:20:27] File "/tmp/boinchome/slots/7/pilot3/pilot/control/job.py", line 2638, in queue_monitor
[2024-10-23 22:20:27] update_server(job, args)
[2024-10-23 22:20:27] File "/tmp/boinchome/slots/7/pilot3/pilot/control/job.py", line 2687, in update_server
[2024-10-23 22:20:27] send_state(job, args, job.state, metadata=metadata)
[2024-10-23 22:20:27] File "/tmp/boinchome/slots/7/pilot3/pilot/control/job.py", line 430, in send_state
[2024-10-23 22:20:27] data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2024-10-23 22:20:27] File "/tmp/boinchome/slots/7/pilot3/pilot/control/job.py", line 757, in get_data_structure
[2024-10-23 22:20:27] cpumodel = get_cpu_cores(cpumodel) # add the CPU cores if not present
[2024-10-23 22:20:27] File "/tmp/boinchome/slots/7/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores
[2024-10-23 22:20:27] ec, stdout = lscpu()
[2024-10-23 22:20:27] File "/tmp/boinchome/slots/7/pilot3/pilot/util/workernode.py", line 333, in lscpu
[2024-10-23 22:20:27] ec, stdout, _ = execute(cmd)
[2024-10-23 22:20:27] File "/tmp/boinchome/slots/7/pilot3/pilot/util/container.py", line 98, in execute
[2024-10-23 22:20:27] process = subprocess.Popen(exe,
[2024-10-23 22:20:27] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-10-23 22:20:27] self._execute_child(args, executable, preexec_fn, close_fds,
[2024-10-23 22:20:27] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-10-23 22:20:27] raise child_exception_type(errno_num, err_msg, err_filename)
[2024-10-23 22:20:27] unexpected exception caught by thread run() function: (<class 'OSError'>, OSError(107, 'Transport endpoint is not connected'), <traceback object at 0x7fa959d33600>)
[2024-10-23 22:20:27] Traceback (most recent call last):
[2024-10-23 22:20:27] File "/tmp/boinchome/slots/7/pilot3/pilot/common/exception.py", line 466, in run
[2024-10-23 22:20:27] self._target(**self.kwargs)
[2024-10-23 22:20:27] File "/tmp/boinchome/slots/7/pilot3/pilot/control/job.py", line 2638, in queue_monitor
[2024-10-23 22:20:27] update_server(job, args)
[2024-10-23 22:20:27] File "/tmp/boinchome/slots/7/pilot3/pilot/control/job.py", line 2687, in update_server
[2024-10-23 22:20:27] send_state(job, args, job.state, metadata=metadata)
[2024-10-23 22:20:27] File "/tmp/boinchome/slots/7/pilot3/pilot/control/job.py", line 430, in send_state
[2024-10-23 22:20:27] data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2024-10-23 22:20:27] File "/tmp/boinchome/slots/7/pilot3/pilot/control/job.py", line 757, in get_data_structure
[2024-10-23 22:20:27] cpumodel = get_cpu_cores(cpumodel) # add the CPU cores if not present
[2024-10-23 22:20:27] File "/tmp/boinchome/slots/7/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores
[2024-10-23 22:20:27] ec, stdout = lscpu()
[2024-10-23 22:20:27] File "/tmp/boinchome/slots/7/pilot3/pilot/util/workernode.py", line 333, in lscpu
[2024-10-23 22:20:27] ec, stdout, _ = execute(cmd)
[2024-10-23 22:20:27] File "/tmp/boinchome/slots/7/pilot3/pilot/util/container.py", line 98, in execute
[2024-10-23 22:20:27] process = subprocess.Popen(exe,
[2024-10-23 22:20:27] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-10-23 22:20:27] self._execute_child(args, executable, preexec_fn, close_fds,
[2024-10-23 22:20:27] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-10-23 22:20:27] raise child_exception_type(errno_num, err_msg, err_filename)
[2024-10-23 22:20:27] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-10-23 22:20:27]
[2024-10-23 22:20:27] None
[2024-10-23 22:20:27] exception has been put in bucket queue belonging to thread 'queue_monitor'
[2024-10-23 22:20:27] setting graceful stop in 10 s since there is no point in continuing
[2024-10-23 22:20:27] 2024-10-24 02:20:11,283 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:20:13,293 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:20:15,302 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:20:17,312 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:20:19,322 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140365580564288)>', '<ExcThread(queue_monitor, started 140365218699008)>']
[2024-10-23 22:20:27] 2024-10-24 02:20:21,332 | INFO | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 140365580564288)>'])
[2024-10-23 22:20:27] 2024-10-24 02:20:26,357 | INFO | all workflow threads have been joined
[2024-10-23 22:20:27] 2024-10-24 02:20:26,357 | INFO | end of generic workflow (traces error code: 0)
[2024-10-23 22:20:27] 2024-10-24 02:20:26,357 | INFO | traces error code: 0
[2024-10-23 22:20:27] 2024-10-24 02:20:26,357 | INFO | pilot has finished (exit code=0, shell exit code=0)
[2024-10-23 22:20:27] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:20:27] ==== pilot stdout END ====
[2024-10-23 22:20:27] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:20:27] ==== wrapper stdout RESUME ====
[2024-10-23 22:20:27] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:20:27] pilotpid: 11580
[2024-10-23 22:20:27] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:20:27] Pilot exit status: 0
[2024-10-23 22:20:27] ./runpilot2-wrapper.sh: line 973: /usr/bin/cat: Transport endpoint is not connected
[2024-10-23 22:20:27] ./runpilot2-wrapper.sh: line 973: /usr/bin/cut: Transport endpoint is not connected
[2024-10-23 22:20:27] ./runpilot2-wrapper.sh: line 973: /usr/bin/xargs: Transport endpoint is not connected
[2024-10-23 22:20:27] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:20:27] pandaids:
[2024-10-23 22:20:27] ./runpilot2-wrapper.sh: line 511: /usr/bin/ps: Transport endpoint is not connected
[2024-10-23 22:20:27] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:20:27] No supervise_pilot CHILD process found
[2024-10-23 22:20:27] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:20:27] Test setup, not cleaning
[2024-10-23 22:20:27] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:20:27] ==== wrapper stdout END ====
[2024-10-23 22:20:27] ./runpilot2-wrapper.sh: line 10: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:20:27] ==== wrapper stderr END ====
[2024-10-23 22:20:27] ./runpilot2-wrapper.sh: line 532: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:20:27] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:20:27] apfmon messages muted
[2024-10-23 22:20:27] *** Error codes and diagnostics ***
[2024-10-23 22:20:27] *** Listing of results directory ***
[2024-10-23 22:20:27] total 378036
[2024-10-23 22:20:27] -rw-r--r-- 1 boincer umatlas 486088 Oct 23 17:01 pilot3.tar.gz
[2024-10-23 22:20:27] -rw-r--r-- 1 boincer umatlas 5654 Oct 23 17:10 queuedata.json
[2024-10-23 22:20:27] -rwx------ 1 boincer umatlas 33946 Oct 23 17:11 runpilot2-wrapper.sh
[2024-10-23 22:20:27] -rw-r--r-- 1 boincer umatlas 100 Oct 23 17:12 wrapper_26015_x86_64-pc-linux-gnu
[2024-10-23 22:20:27] -rwxr-xr-x 1 boincer umatlas 7986 Oct 23 17:12 run_atlas
[2024-10-23 22:20:27] -rw-r--r-- 1 boincer umatlas 105 Oct 23 17:12 job.xml
[2024-10-23 22:20:27] -rw-r--r-- 2 boincer umatlas 380319355 Oct 23 17:12 EVNT.41780222._000012.pool.root.1
[2024-10-23 22:20:27] -rw-r--r-- 2 boincer umatlas 17539 Oct 23 17:12 start_atlas.sh
[2024-10-23 22:20:27] drwxrwx--x 2 boincer umatlas 4096 Oct 23 17:12 shared
[2024-10-23 22:20:27] -rw-r--r-- 2 boincer umatlas 499793 Oct 23 17:12 input.tar.gz
[2024-10-23 22:20:27] -rw-r--r-- 1 boincer umatlas 0 Oct 23 17:12 boinc_lockfile
[2024-10-23 22:20:27] -rw-r--r-- 1 boincer umatlas 2887 Oct 23 17:12 pandaJob.out
[2024-10-23 22:20:27] -rw------- 1 boincer umatlas 424 Oct 23 17:12 setup.sh.local
[2024-10-23 22:20:27] -rw------- 1 boincer umatlas 1025434 Oct 23 17:13 agis_schedconf.cvmfs.json
[2024-10-23 22:20:27] -rw------- 1 boincer umatlas 1611897 Oct 23 17:13 agis_ddmendpoints.agis.ALL.json
[2024-10-23 22:20:27] drwx------ 4 boincer umatlas 4096 Oct 23 17:13 pilot3
[2024-10-23 22:20:27] -rw------- 1 boincer umatlas 907 Oct 23 21:52 heartbeat.json
[2024-10-23 22:20:27] -rw-r--r-- 1 boincer umatlas 6302 Oct 23 22:12 init_data.xml
[2024-10-23 22:20:27] -rw------- 1 boincer umatlas 95 Oct 23 22:17 pilot_heartbeat.json
[2024-10-23 22:20:27] -rw-r--r-- 1 boincer umatlas 530 Oct 23 22:17 boinc_task_state.xml
[2024-10-23 22:20:27] -rw------- 1 boincer umatlas 1086 Oct 23 22:17 memory_monitor_summary.json
[2024-10-23 22:20:27] drwxrwx--- 3 boincer umatlas 4096 Oct 23 22:17 PanDA_Pilot-6376785229
[2024-10-23 22:20:27] -rw------- 1 boincer umatlas 1461842 Oct 23 22:20 pilotlog.txt
[2024-10-23 22:20:27] -rw------- 1 boincer umatlas 1489441 Oct 23 22:20 log.41780225._000177.job.log.1
[2024-10-23 22:20:27] -rw-r--r-- 1 boincer umatlas 428 Oct 23 22:20 runtime_log
[2024-10-23 22:20:27] -rw------- 1 boincer umatlas 628 Oct 23 22:20 uzVLDm4oxN6n7OlckoGmwREmGgkVDo1bjSoqOlfODmzSALDmNvoHwm.diag
[2024-10-23 22:20:27] -rw-r--r-- 1 boincer umatlas 8192 Oct 23 22:20 boinc_mmap_file
[2024-10-23 22:20:27] -rw-r--r-- 1 boincer umatlas 28 Oct 23 22:20 wrapper_checkpoint.txt
[2024-10-23 22:20:27] -rw-r--r-- 1 boincer umatlas 11290 Oct 23 22:20 runtime_log.err
[2024-10-23 22:20:27] -rw-r--r-- 1 boincer umatlas 28011 Oct 23 22:20 stderr.txt
[2024-10-23 22:20:27] No HITS result produced
[2024-10-23 22:20:27] *** Contents of shared directory: ***
[2024-10-23 22:20:27] total 371924
[2024-10-23 22:20:27] -rw-r--r-- 2 boincer umatlas 380319355 Oct 23 17:12 ATLAS.root_0
[2024-10-23 22:20:27] -rw-r--r-- 2 boincer umatlas 17539 Oct 23 17:12 start_atlas.sh
[2024-10-23 22:20:27] -rw-r--r-- 2 boincer umatlas 499793 Oct 23 17:12 input.tar.gz
22:20:29 (51442): run_atlas exited; CPU time 4202.300285
22:20:29 (51442): called boinc_finish(0)
</stderr_txt>
<message>
upload failure: <file_xfer_error>
<file_name>uzVLDm4oxN6n7OlckoGmwREmGgkVDo1bjSoqOlfODmzSALDmNvoHwm_0_r8291018_ATLAS_result</file_name>
<error_code>-161 (not found)</error_code>
</file_xfer_error>
</message>
]]>
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