| Name | 0juKDm3JxN6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmpKXLDmr1DKum_0 |
| Workunit | 226248428 |
| Created | 23 Oct 2024, 20:39:51 UTC |
| Sent | 23 Oct 2024, 20:39:56 UTC |
| Report deadline | 31 Oct 2024, 20:39:56 UTC |
| Received | 24 Oct 2024, 2:22:37 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 0 (0x00000000) |
| Computer ID | 10830555 |
| Run time | 5 hours 40 min 13 sec |
| CPU time | 9 hours 9 min 24 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 41.61 GFLOPS |
| Application version | ATLAS Simulation v3.01 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.53 GB |
| Peak swap size | 31.65 GB |
| Peak disk usage | 876.97 MB |
Stderr output
<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:40:33 (5556): wrapper (7.7.26015): starting
16:40:33 (5556): wrapper: running run_atlas (--nthreads 9)
[2024-10-23 16:40:33] Arguments: --nthreads 9
[2024-10-23 16:40:33] Threads: 9
[2024-10-23 16:40:33] Checking for CVMFS
[2024-10-23 16:40:34] Probing /cvmfs/atlas.cern.ch... OK
[2024-10-23 16:40:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-10-23 16:40:34] Running cvmfs_config stat atlas.cern.ch
[2024-10-23 16:40:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-10-23 16:40:36] 2.11.2.0 2015 12 92196 138664 3 535 13599066 18432000 11022 130560 0 570442 96.861 4634050 43716 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2024-10-23 16:40:36] CVMFS is ok
[2024-10-23 16:40:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-10-23 16:40:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-10-23 16:40:36] Further information can be found at the LHC@home message board.
[2024-10-23 16:40:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-10-23 16:40:36] Checking for apptainer binary...
[2024-10-23 16:40:36] Using apptainer found in PATH at /usr/bin/apptainer
[2024-10-23 16:40:36] Running /usr/bin/apptainer --version
[2024-10-23 16:40:36] apptainer version 1.3.2-1.el7
[2024-10-23 16:40:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-10-23 16:41:21] c-212-15.aglt2.org
[2024-10-23 16:41:21] apptainer works
[2024-10-23 16:41:21] Set ATHENA_PROC_NUMBER=9
[2024-10-23 16:41:21] Set ATHENA_CORE_NUMBER=9
[2024-10-23 16:41:21] Starting ATLAS job with PandaID=6376767591
[2024-10-23 16:41:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-10-23 22:20:43] *** The last 200 lines of the pilot log: ***
[2024-10-23 22:20:43] 2024-10-24 02:18:21,552 | WARNING | thread 'copytool_out' received an exception from bucket: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-10-23 22:20:43] 2024-10-24 02:18:23,813 | WARNING | Exception caught: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-10-23 22:20:43] 2024-10-24 02:18:23,814 | WARNING | Traceback (most recent call last):
[2024-10-23 22:20:43] File "/tmp/boinchome/slots/0/pilot3/pilot/util/monitoring.py", line 109, in job_monitor_tasks
[2024-10-23 22:20:43] cpuconsumptiontime = get_current_cpu_consumption_time(job.pid)
[2024-10-23 22:20:43] File "/tmp/boinchome/slots/0/pilot3/pilot/util/processes.py", line 600, in get_current_cpu_consumption_time
[2024-10-23 22:20:43] _, ps_cache, _ = execute("ps -eo pid,ppid -m", mute=True, timeout=60)
[2024-10-23 22:20:43] File "/tmp/boinchome/slots/0/pilot3/pilot/util/container.py", line 98, in execute
[2024-10-23 22:20:43] process = subprocess.Popen(exe,
[2024-10-23 22:20:43] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-10-23 22:20:43] self._execute_child(args, executable, preexec_fn, close_fds,
[2024-10-23 22:20:43] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-10-23 22:20:43] raise child_exception_type(errno_num, err_msg, err_filename)
[2024-10-23 22:20:43] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-10-23 22:20:43]
[2024-10-23 22:20:43] 2024-10-24 02:18:23,814 | WARNING | will send preliminary diagnostics (and pretend job is still running)=Exception caught: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-10-23 22:20:43] 2024-10-24 02:18:23,814 | INFO | pilot will not update the server (heartbeat message will be written to file)
[2024-10-23 22:20:43] 2024-10-24 02:18:23,814 | INFO | log transfer has not been attempted: IN_PROGRESS
[2024-10-23 22:20:43] 2024-10-24 02:18:23,814 | INFO | job 6376767591 has state 'running' - writing heartbeat
[2024-10-23 22:20:43] 2024-10-24 02:18:23,815 | INFO | payload/TRF did not report the number of read events
[2024-10-23 22:20:43] 2024-10-24 02:18:23,818 | INFO | executing command: lscpu
[2024-10-23 22:20:43] 2024-10-24 02:18:23,822 | WARNING | exception caught: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-10-23 22:20:43] 2024-10-24 02:18:26,325 | INFO | monitor loop #1227: job 0:6376767591 is in state 'failed'
[2024-10-23 22:20:43] 2024-10-24 02:18:26,325 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2024-10-23 22:20:43] 2024-10-24 02:18:28,828 | INFO | monitor loop #1228: job 0:6376767591 is in state 'failed'
[2024-10-23 22:20:43] 2024-10-24 02:18:28,828 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2024-10-23 22:20:43] 2024-10-24 02:18:31,100 | INFO | all payload control threads have been joined
[2024-10-23 22:20:43] 2024-10-24 02:18:31,236 | INFO | found 1 job(s) in 20 queues
[2024-10-23 22:20:43] 2024-10-24 02:18:31,237 | INFO | aborting job 6376767591
[2024-10-23 22:20:43] 2024-10-24 02:18:31,237 | WARNING | could not find signal name for signal number None - using SIGTERM
[2024-10-23 22:20:43] 2024-10-24 02:18:31,298 | WARNING | pilot monitor received instruction that args.graceful_stop has been set
[2024-10-23 22:20:43] 2024-10-24 02:18:31,298 | INFO | job 6376767591 has state=failed
[2024-10-23 22:20:43] 2024-10-24 02:18:31,299 | WARNING | will wait for a maximum of 300 s for threads to finish
[2024-10-23 22:20:43] 2024-10-24 02:18:31,299 | INFO | preparing for final server update for job 6376767591 in state='failed'
[2024-10-23 22:20:43] 2024-10-24 02:18:31,299 | WARNING | job_aborted has been set - aborting pilot monitoring
[2024-10-23 22:20:43] 2024-10-24 02:18:31,300 | INFO | [monitor] control thread has ended
[2024-10-23 22:20:43] 2024-10-24 02:18:31,304 | INFO | all data control threads have been joined
[2024-10-23 22:20:43] 2024-10-24 02:18:31,331 | INFO | monitor loop #1229: job 0:6376767591 is in state 'failed'
[2024-10-23 22:20:43] 2024-10-24 02:18:31,331 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2024-10-23 22:20:43] 2024-10-24 02:18:31,331 | WARNING | job:job_monitor:received graceful stop - abort after this iteration
[2024-10-23 22:20:43] 2024-10-24 02:18:31,331 | INFO | will abort loop
[2024-10-23 22:20:43] 2024-10-24 02:18:32,105 | INFO | [payload] control thread has finished
[2024-10-23 22:20:43] 2024-10-24 02:18:32,111 | INFO | [payload] run_realtimelog thread has finished
[2024-10-23 22:20:43] 2024-10-24 02:18:32,162 | INFO | [data] copytool_in thread has finished
[2024-10-23 22:20:43] 2024-10-24 02:18:32,166 | INFO | [job] create_data_payload thread has finished
[2024-10-23 22:20:43] 2024-10-24 02:18:32,309 | INFO | [data] control thread has finished
[2024-10-23 22:20:43] 2024-10-24 02:18:32,336 | INFO | [job] job monitor thread has finished
[2024-10-23 22:20:43] 2024-10-24 02:18:32,626 | INFO | [payload] validate_post thread has finished
[2024-10-23 22:20:43] 2024-10-24 02:18:32,706 | INFO | all job control threads have been joined
[2024-10-23 22:20:43] 2024-10-24 02:18:32,771 | INFO | [job] validate thread has finished
[2024-10-23 22:20:43] 2024-10-24 02:18:32,772 | INFO | [payload] validate_pre thread has finished
[2024-10-23 22:20:43] 2024-10-24 02:18:32,950 | WARNING | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-10-23 22:20:43] 2024-10-24 02:18:33,176 | INFO | [payload] failed_post thread has finished
[2024-10-23 22:20:43] 2024-10-24 02:18:33,266 | INFO | [job] retrieve thread has finished
[2024-10-23 22:20:43] 2024-10-24 02:18:33,711 | INFO | [job] control thread has finished
[2024-10-23 22:20:43] 2024-10-24 02:18:36,951 | INFO | [payload] execute_payloads thread has finished
[2024-10-23 22:20:43] 2024-10-24 02:18:36,955 | INFO | [data] queue_monitor thread has finished
[2024-10-23 22:20:43] 2024-10-24 02:18:38,741 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:18:40,752 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:18:42,762 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:18:44,772 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:18:46,782 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:18:48,792 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:18:50,798 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:18:52,808 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:18:54,820 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:18:56,830 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:18:58,840 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:19:00,851 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:19:02,862 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:19:04,871 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:19:06,876 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:19:08,887 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:19:10,897 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:19:12,907 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:19:14,918 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:19:16,928 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:19:18,941 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:19:20,951 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:19:22,962 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:19:24,972 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:19:26,982 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:19:28,992 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:19:31,003 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:19:33,016 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:19:35,027 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:19:37,037 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:19:39,047 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:19:41,057 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:19:43,067 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:19:45,075 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:19:47,085 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:19:49,095 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:19:51,105 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:19:53,115 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:19:55,125 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:19:57,135 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:19:59,145 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:20:01,155 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:20:03,165 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:20:05,175 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:20:07,185 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:20:09,195 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:20:11,205 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:20:13,215 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:20:15,225 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:20:17,235 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:20:19,245 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:20:21,255 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:20:23,264 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:20:25,275 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:20:26,314 | INFO | proceeding with final server update
[2024-10-23 22:20:43] 2024-10-24 02:20:26,315 | INFO | this job has now completed (state=failed)
[2024-10-23 22:20:43] 2024-10-24 02:20:26,315 | INFO | pilot will not update the server (heartbeat message will be written to file)
[2024-10-23 22:20:43] 2024-10-24 02:20:26,315 | INFO | log transfer has not been attempted: IN_PROGRESS
[2024-10-23 22:20:43] 2024-10-24 02:20:26,315 | INFO | job 6376767591 has state 'failed' - writing heartbeat
[2024-10-23 22:20:43] 2024-10-24 02:20:26,316 | INFO | payload/TRF did not report the number of read events
[2024-10-23 22:20:43] 2024-10-24 02:20:26,319 | INFO | executing command: lscpu
[2024-10-23 22:20:43] File "/tmp/boinchome/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2024-10-23 22:20:43] self._target(**self.kwargs)
[2024-10-23 22:20:43] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 2638, in queue_monitor
[2024-10-23 22:20:43] update_server(job, args)
[2024-10-23 22:20:43] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 2687, in update_server
[2024-10-23 22:20:43] send_state(job, args, job.state, metadata=metadata)
[2024-10-23 22:20:43] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 430, in send_state
[2024-10-23 22:20:43] data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2024-10-23 22:20:43] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 757, in get_data_structure
[2024-10-23 22:20:43] cpumodel = get_cpu_cores(cpumodel) # add the CPU cores if not present
[2024-10-23 22:20:43] File "/tmp/boinchome/slots/0/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores
[2024-10-23 22:20:43] ec, stdout = lscpu()
[2024-10-23 22:20:43] File "/tmp/boinchome/slots/0/pilot3/pilot/util/workernode.py", line 333, in lscpu
[2024-10-23 22:20:43] ec, stdout, _ = execute(cmd)
[2024-10-23 22:20:43] File "/tmp/boinchome/slots/0/pilot3/pilot/util/container.py", line 98, in execute
[2024-10-23 22:20:43] process = subprocess.Popen(exe,
[2024-10-23 22:20:43] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-10-23 22:20:43] self._execute_child(args, executable, preexec_fn, close_fds,
[2024-10-23 22:20:43] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-10-23 22:20:43] raise child_exception_type(errno_num, err_msg, err_filename)
[2024-10-23 22:20:43] unexpected exception caught by thread run() function: (<class 'OSError'>, OSError(107, 'Transport endpoint is not connected'), <traceback object at 0x7f4c95caca00>)
[2024-10-23 22:20:43] Traceback (most recent call last):
[2024-10-23 22:20:43] File "/tmp/boinchome/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2024-10-23 22:20:43] self._target(**self.kwargs)
[2024-10-23 22:20:43] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 2638, in queue_monitor
[2024-10-23 22:20:43] update_server(job, args)
[2024-10-23 22:20:43] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 2687, in update_server
[2024-10-23 22:20:43] send_state(job, args, job.state, metadata=metadata)
[2024-10-23 22:20:43] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 430, in send_state
[2024-10-23 22:20:43] data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2024-10-23 22:20:43] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 757, in get_data_structure
[2024-10-23 22:20:43] cpumodel = get_cpu_cores(cpumodel) # add the CPU cores if not present
[2024-10-23 22:20:43] File "/tmp/boinchome/slots/0/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores
[2024-10-23 22:20:43] ec, stdout = lscpu()
[2024-10-23 22:20:43] File "/tmp/boinchome/slots/0/pilot3/pilot/util/workernode.py", line 333, in lscpu
[2024-10-23 22:20:43] ec, stdout, _ = execute(cmd)
[2024-10-23 22:20:43] File "/tmp/boinchome/slots/0/pilot3/pilot/util/container.py", line 98, in execute
[2024-10-23 22:20:43] process = subprocess.Popen(exe,
[2024-10-23 22:20:43] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-10-23 22:20:43] self._execute_child(args, executable, preexec_fn, close_fds,
[2024-10-23 22:20:43] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-10-23 22:20:43] raise child_exception_type(errno_num, err_msg, err_filename)
[2024-10-23 22:20:43] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-10-23 22:20:43]
[2024-10-23 22:20:43] None
[2024-10-23 22:20:43] exception has been put in bucket queue belonging to thread 'queue_monitor'
[2024-10-23 22:20:43] setting graceful stop in 10 s since there is no point in continuing
[2024-10-23 22:20:43] 2024-10-24 02:20:27,285 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:20:29,295 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:20:31,306 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:20:33,316 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:20:35,325 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139967154534208)>', '<ExcThread(queue_monitor, started 139966759802624)>']
[2024-10-23 22:20:43] 2024-10-24 02:20:37,335 | INFO | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 139967154534208)>'])
[2024-10-23 22:20:43] 2024-10-24 02:20:42,360 | INFO | all workflow threads have been joined
[2024-10-23 22:20:43] 2024-10-24 02:20:42,360 | INFO | end of generic workflow (traces error code: 0)
[2024-10-23 22:20:43] 2024-10-24 02:20:42,361 | INFO | traces error code: 0
[2024-10-23 22:20:43] 2024-10-24 02:20:42,361 | INFO | pilot has finished (exit code=0, shell exit code=0)
[2024-10-23 22:20:43] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:20:43] ==== pilot stdout END ====
[2024-10-23 22:20:43] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:20:43] ==== wrapper stdout RESUME ====
[2024-10-23 22:20:43] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:20:43] pilotpid: 85343
[2024-10-23 22:20:43] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:20:43] Pilot exit status: 0
[2024-10-23 22:20:43] ./runpilot2-wrapper.sh: line 973: /usr/bin/cat: Transport endpoint is not connected
[2024-10-23 22:20:43] ./runpilot2-wrapper.sh: line 973: /usr/bin/xargs: Transport endpoint is not connected
[2024-10-23 22:20:43] ./runpilot2-wrapper.sh: line 973: /usr/bin/cut: Transport endpoint is not connected
[2024-10-23 22:20:43] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:20:43] pandaids:
[2024-10-23 22:20:43] ./runpilot2-wrapper.sh: line 511: /usr/bin/ps: Transport endpoint is not connected
[2024-10-23 22:20:43] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:20:43] No supervise_pilot CHILD process found
[2024-10-23 22:20:43] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:20:43] Test setup, not cleaning
[2024-10-23 22:20:43] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:20:43] ==== wrapper stdout END ====
[2024-10-23 22:20:43] ./runpilot2-wrapper.sh: line 10: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:20:43] ==== wrapper stderr END ====
[2024-10-23 22:20:43] ./runpilot2-wrapper.sh: line 532: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:20:43] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 22:20:43] apfmon messages muted
[2024-10-23 22:20:43] *** Error codes and diagnostics ***
[2024-10-23 22:20:43] *** Listing of results directory ***
[2024-10-23 22:20:43] total 382940
[2024-10-23 22:20:43] -rw-r--r-- 1 boincer umatlas 486088 Oct 23 16:05 pilot3.tar.gz
[2024-10-23 22:20:43] -rw-r--r-- 1 boincer umatlas 5654 Oct 23 16:36 queuedata.json
[2024-10-23 22:20:43] -rwx------ 1 boincer umatlas 33946 Oct 23 16:39 runpilot2-wrapper.sh
[2024-10-23 22:20:43] -rw-r--r-- 1 boincer umatlas 100 Oct 23 16:40 wrapper_26015_x86_64-pc-linux-gnu
[2024-10-23 22:20:43] -rwxr-xr-x 1 boincer umatlas 7986 Oct 23 16:40 run_atlas
[2024-10-23 22:20:43] -rw-r--r-- 1 boincer umatlas 105 Oct 23 16:40 job.xml
[2024-10-23 22:20:43] -rw-r--r-- 2 boincer umatlas 385072832 Oct 23 16:40 EVNT.41780262._000019.pool.root.1
[2024-10-23 22:20:43] -rw-r--r-- 2 boincer umatlas 17539 Oct 23 16:40 start_atlas.sh
[2024-10-23 22:20:43] drwxrwx--x 2 boincer umatlas 4096 Oct 23 16:40 shared
[2024-10-23 22:20:43] -rw-r--r-- 2 boincer umatlas 499793 Oct 23 16:40 input.tar.gz
[2024-10-23 22:20:43] -rw-r--r-- 1 boincer umatlas 0 Oct 23 16:40 boinc_lockfile
[2024-10-23 22:20:43] -rw-r--r-- 1 boincer umatlas 2886 Oct 23 16:41 pandaJob.out
[2024-10-23 22:20:43] -rw------- 1 boincer umatlas 424 Oct 23 16:41 setup.sh.local
[2024-10-23 22:20:43] -rw------- 1 boincer umatlas 1025434 Oct 23 16:42 agis_schedconf.cvmfs.json
[2024-10-23 22:20:43] -rw------- 1 boincer umatlas 1611897 Oct 23 16:42 agis_ddmendpoints.agis.ALL.json
[2024-10-23 22:20:43] drwx------ 4 boincer umatlas 4096 Oct 23 16:42 pilot3
[2024-10-23 22:20:43] -rw------- 1 boincer umatlas 908 Oct 23 21:51 heartbeat.json
[2024-10-23 22:20:43] -rw-r--r-- 1 boincer umatlas 6302 Oct 23 22:12 init_data.xml
[2024-10-23 22:20:43] -rw------- 1 boincer umatlas 95 Oct 23 22:17 pilot_heartbeat.json
[2024-10-23 22:20:43] -rw-r--r-- 1 boincer umatlas 531 Oct 23 22:18 boinc_task_state.xml
[2024-10-23 22:20:43] -rw------- 1 boincer umatlas 1086 Oct 23 22:18 memory_monitor_summary.json
[2024-10-23 22:20:43] drwxrwx--- 3 boincer umatlas 4096 Oct 23 22:18 PanDA_Pilot-6376767591
[2024-10-23 22:20:43] -rw------- 1 boincer umatlas 1596500 Oct 23 22:20 pilotlog.txt
[2024-10-23 22:20:43] -rw------- 1 boincer umatlas 1624257 Oct 23 22:20 log.41780268._000162.job.log.1
[2024-10-23 22:20:43] -rw-r--r-- 1 boincer umatlas 428 Oct 23 22:20 runtime_log
[2024-10-23 22:20:43] -rw------- 1 boincer umatlas 629 Oct 23 22:20 0juKDm3JxN6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmpKXLDmr1DKum.diag
[2024-10-23 22:20:43] -rw-r--r-- 1 boincer umatlas 28 Oct 23 22:20 wrapper_checkpoint.txt
[2024-10-23 22:20:43] -rw-r--r-- 1 boincer umatlas 8192 Oct 23 22:20 boinc_mmap_file
[2024-10-23 22:20:43] -rw-r--r-- 1 boincer umatlas 11290 Oct 23 22:20 runtime_log.err
[2024-10-23 22:20:43] -rw-r--r-- 1 boincer umatlas 28071 Oct 23 22:20 stderr.txt
[2024-10-23 22:20:43] No HITS result produced
[2024-10-23 22:20:43] *** Contents of shared directory: ***
[2024-10-23 22:20:43] total 376564
[2024-10-23 22:20:43] -rw-r--r-- 2 boincer umatlas 385072832 Oct 23 16:40 ATLAS.root_0
[2024-10-23 22:20:43] -rw-r--r-- 2 boincer umatlas 17539 Oct 23 16:40 start_atlas.sh
[2024-10-23 22:20:43] -rw-r--r-- 2 boincer umatlas 499793 Oct 23 16:40 input.tar.gz
22:20:44 (5556): run_atlas exited; CPU time 4549.948806
22:20:44 (5556): called boinc_finish(0)
</stderr_txt>
<message>
upload failure: <file_xfer_error>
<file_name>0juKDm3JxN6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmpKXLDmr1DKum_0_r218544370_ATLAS_result</file_name>
<error_code>-161 (not found)</error_code>
</file_xfer_error>
</message>
]]>
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