Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2024-10-23 20:00:25 (15596): Detected: vboxwrapper 26206
2024-10-23 20:00:25 (15596): Detected: BOINC client v8.0.2
2024-10-23 20:00:25 (15596): Detected: VirtualBox VboxManage Interface (Version: 7.0.20)
2024-10-23 20:00:25 (15596): Successfully copied 'init_data.xml' to the shared directory.
2024-10-23 20:00:26 (15596): Create VM. (boinc_35a8ba1b7fbf4eef, slot#3)
2024-10-23 20:00:26 (15596): Setting Memory Size for VM. (4800MB)
2024-10-23 20:00:27 (15596): Setting CPU Count for VM. (8)
2024-10-23 20:00:27 (15596): Setting Chipset Options for VM.
2024-10-23 20:00:27 (15596): Setting Graphics Controller Options for VM.
2024-10-23 20:00:27 (15596): Setting Boot Options for VM.
2024-10-23 20:00:28 (15596): Setting Network Configuration for NAT.
2024-10-23 20:00:28 (15596): Enabling VM Network Access.
2024-10-23 20:00:28 (15596): Disabling USB Support for VM.
2024-10-23 20:00:28 (15596): Disabling COM Port Support for VM.
2024-10-23 20:00:29 (15596): Disabling LPT Port Support for VM.
2024-10-23 20:00:29 (15596): Disabling Audio Support for VM.
2024-10-23 20:00:29 (15596): Disabling Clipboard Support for VM.
2024-10-23 20:00:29 (15596): Disabling Drag and Drop Support for VM.
2024-10-23 20:00:30 (15596): Adding storage controller(s) to VM.
2024-10-23 20:00:30 (15596): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-10-23 20:00:33 (15596): Adding VirtualBox Guest Additions to VM.
2024-10-23 20:00:33 (15596): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-10-23 20:00:33 (15596): forwarding host port 55859 to guest port 80
2024-10-23 20:00:33 (15596): Enabling remote desktop for VM.
2024-10-23 20:00:34 (15596): Enabling shared directory for VM.
2024-10-23 20:00:35 (15596): Starting VM using VBoxManage interface. (boinc_35a8ba1b7fbf4eef, slot#3)
2024-10-23 20:00:39 (15596): Successfully started VM. (PID = '13372')
2024-10-23 20:00:39 (15596): Reporting VM Process ID to BOINC.
2024-10-23 20:00:39 (15596): Guest Log: BIOS: VirtualBox 7.0.20
2024-10-23 20:00:39 (15596): Guest Log: CPUID EDX: 0x178bfbff
2024-10-23 20:00:39 (15596): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-10-23 20:00:39 (15596): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-10-23 20:00:39 (15596): VM state change detected. (old = 'poweredoff', new = 'running')
2024-10-23 20:00:39 (15596): Detected: Web Application Enabled (http://localhost:55859)
2024-10-23 20:00:39 (15596): Detected: Remote Desktop Enabled (localhost:55863)
2024-10-23 20:00:39 (15596): Preference change detected
2024-10-23 20:00:39 (15596): Setting CPU throttle for VM. (70%)
2024-10-23 20:00:39 (15596): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-10-23 20:00:41 (15596): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-10-23 20:00:41 (15596): Guest Log: BIOS: Booting from Hard Disk...
2024-10-23 20:00:44 (15596): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-10-23 20:00:44 (15596): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-10-23 20:00:44 (15596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-10-23 20:00:44 (15596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-10-23 20:00:44 (15596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-10-23 20:00:44 (15596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-10-23 20:00:44 (15596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-10-23 20:00:44 (15596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-10-23 20:00:44 (15596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-10-23 20:00:44 (15596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-10-23 20:00:44 (15596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-10-23 20:00:44 (15596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-10-23 20:00:44 (15596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-10-23 20:00:44 (15596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-10-23 20:00:44 (15596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-10-23 20:00:44 (15596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-10-23 20:00:44 (15596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-10-23 20:00:44 (15596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-10-23 20:00:44 (15596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-10-23 20:00:44 (15596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-10-23 20:00:44 (15596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-10-23 20:00:44 (15596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-10-23 20:00:44 (15596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-10-23 20:00:44 (15596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-10-23 20:00:44 (15596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-10-23 20:00:44 (15596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-10-23 20:00:44 (15596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-10-23 20:00:44 (15596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-10-23 20:00:44 (15596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-10-23 20:00:44 (15596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-10-23 20:00:44 (15596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-10-23 20:00:44 (15596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-10-23 20:00:48 (15596): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-10-23 20:00:48 (15596): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-10-23 20:00:51 (15596): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-10-23 20:00:51 (15596): Guest Log: 00:00:00.000064 main     Log opened 2024-10-23T20:00:49.723684000Z
2024-10-23 20:00:51 (15596): Guest Log: 00:00:00.000107 main     OS Product: Linux
2024-10-23 20:00:51 (15596): Guest Log: 00:00:00.000119 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-10-23 20:00:51 (15596): Guest Log: 00:00:00.000129 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-10-23 20:00:51 (15596): Guest Log: 00:00:00.000141 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-10-23 20:00:51 (15596): Guest Log: 00:00:00.000141 main     Process ID: 1367
2024-10-23 20:00:51 (15596): Guest Log: 00:00:00.000141 main     Package type: LINUX_64BITS_GENERIC
2024-10-23 20:00:51 (15596): Guest Log: 00:00:00.002285 main     5.2.32 r132073 started. Verbose level = 0
2024-10-23 20:00:51 (15596): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-10-23 20:00:51 (15596): Guest Log: [INFO] Mounting shared directory
2024-10-23 20:00:51 (15596): Guest Log: [INFO] Checking for init_data.xml
2024-10-23 20:00:56 (15596): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-10-23 20:00:56 (15596): Guest Log: [INFO] Detected branch: prod
2024-10-23 20:00:56 (15596): Guest Log: This is the prod version of the ATLAS job wrapper
2024-10-23 20:00:56 (15596): Guest Log: Copying input files
2024-10-23 20:00:58 (15596): Guest Log: Copied input files into RunAtlas.
2024-10-23 20:00:58 (15596): Guest Log: Detected user-configured HTTP proxy at http://proxy:3128 - will set in /etc/cvmfs/default.local
2024-10-23 20:01:01 (15596): Guest Log: 00:00:10.017556 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 788 530 083 000ns (GuestNow=1 729 702 861 210 035 000 ns GuestLast=1 729 713 649 740 118 000 ns fSetTimeLastLoop=true )
2024-10-23 20:01:06 (15596): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-10-23 20:01:06 (15596): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-10-23 20:01:06 (15596): Guest Log: 2.6.3.0 1645 0 29616 138658 4 1 3117398 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.123.108:3128 1
2024-10-23 20:01:06 (15596): Guest Log: copied the webapp to /var/www
2024-10-23 20:01:06 (15596): Guest Log: ATHENA_PROC_NUMBER=8
2024-10-23 20:01:06 (15596): Guest Log: ATHENA_CORE_NUMBER=8
2024-10-23 20:01:06 (15596): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-10-23 20:01:06 (15596): Guest Log:  *** Starting ATLAS job. (PandaID=6376526106 taskID=41780205) ***
2024-10-23 21:40:43 (15596): Status Report: Elapsed Time: '6000.000000'
2024-10-23 21:40:43 (15596): Status Report: CPU Time: '11843.765625'
2024-10-23 23:20:47 (15596): Status Report: Elapsed Time: '12000.000000'
2024-10-23 23:20:47 (15596): Status Report: CPU Time: '25339.687500'
2024-10-23 23:24:15 (15596): VM state change detected. (old = 'running', new = 'paused')
2024-10-23 23:24:35 (15596): VM state change detected. (old = 'paused', new = 'running')
2024-10-23 23:24:46 (15596): VM state change detected. (old = 'running', new = 'paused')
2024-10-23 23:25:06 (15596): VM state change detected. (old = 'paused', new = 'running')
2024-10-23 23:27:07 (15596): VM state change detected. (old = 'running', new = 'paused')
2024-10-23 23:27:27 (15596): VM state change detected. (old = 'paused', new = 'running')
2024-10-23 23:27:37 (15596): VM state change detected. (old = 'running', new = 'paused')
2024-10-23 23:27:57 (15596): VM state change detected. (old = 'paused', new = 'running')
2024-10-23 23:28:07 (15596): VM state change detected. (old = 'running', new = 'paused')
2024-10-23 23:28:27 (15596): VM state change detected. (old = 'paused', new = 'running')
2024-10-24 01:02:35 (15596): Status Report: Elapsed Time: '18000.000000'
2024-10-24 01:02:35 (15596): Status Report: CPU Time: '37295.875000'
2024-10-24 02:05:05 (15596): Guest Log:  *** Job finished ***
2024-10-24 02:05:05 (15596): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-10-24 02:05:05 (15596): Guest Log: 2024-10-23 23:03:14,309 | INFO     | [payload] validate_post thread has finished
2024-10-24 02:05:05 (15596): Guest Log: 2024-10-23 23:03:15,109 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2024-10-24 02:05:05 (15596): Guest Log: 2024-10-23 23:03:19,146 | INFO     | [data] queue_monitor thread has finished
2024-10-24 02:05:05 (15596): Guest Log: 2024-10-23 23:03:20,440 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140411277182784)>', '<ExcThread(monitor, started 140410903049984)>']
2024-10-24 02:05:05 (15596): Guest Log: 2024-10-23 23:03:20,451 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-10-24 02:05:05 (15596): Guest Log: 2024-10-23 23:03:20,451 | INFO     | [monitor] control thread has ended
2024-10-24 02:05:05 (15596): Guest Log: 2024-10-23 23:03:25,476 | INFO     | all workflow threads have been joined
2024-10-24 02:05:05 (15596): Guest Log: 2024-10-23 23:03:25,476 | INFO     | end of generic workflow (traces error code: 0)
2024-10-24 02:05:05 (15596): Guest Log: 2024-10-23 23:03:25,476 | INFO     | traces error code: 0
2024-10-24 02:05:05 (15596): Guest Log: 2024-10-23 23:03:25,476 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-10-24 02:05:05 (15596): Guest Log: 2024-10-23 23:03:25,532 [wrapper] ==== pilot stdout END ====
2024-10-24 02:05:05 (15596): Guest Log: 2024-10-23 23:03:25,535 [wrapper] ==== wrapper stdout RESUME ====
2024-10-24 02:05:05 (15596): Guest Log: 2024-10-23 23:03:25,540 [wrapper] pilotpid: 6021
2024-10-24 02:05:05 (15596): Guest Log: 2024-10-23 23:03:25,543 [wrapper] Pilot exit status: 0
2024-10-24 02:05:05 (15596): Guest Log: 2024-10-23 23:03:25,572 [wrapper] pandaids: 6376526106
2024-10-24 02:05:05 (15596): Guest Log: 2024-10-23 23:03:25,604 [wrapper] cleanup supervisor_pilot   503 6022
2024-10-24 02:05:05 (15596): Guest Log: 2024-10-23 23:03:25,609 [wrapper] Test setup, not cleaning
2024-10-24 02:05:05 (15596): Guest Log: 2024-10-23 23:03:25,628 [wrapper] ==== wrapper stdout END ====
2024-10-24 02:05:05 (15596): Guest Log: 2024-10-23 23:03:25,634 [wrapper] ==== wrapper stderr END ====
2024-10-24 02:05:05 (15596): Guest Log: 2024-10-23 23:03:25,647 [wrapper] apfmon messages muted
2024-10-24 02:05:05 (15596): Guest Log:  *** Error codes and diagnostics ***
2024-10-24 02:05:05 (15596): Guest Log:     "exeErrorCode": 65,
2024-10-24 02:05:05 (15596): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (65); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 167; Run: 284500; Evt: 495053; Current algorithm: ISF_Kernel_FullG4_LongLived; Current Function: unknown\"",
2024-10-24 02:05:05 (15596): Guest Log:     "pilotErrorCode": 1305,
2024-10-24 02:05:05 (15596): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute 2024-10-23 23:02:52,833 CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (65); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 167; Run: 284500; Evt: 495053; Current algorith",
2024-10-24 02:05:05 (15596): Guest Log:  *** Listing of results directory ***
2024-10-24 02:05:05 (15596): Guest Log: total 9104
2024-10-24 02:05:05 (15596): Guest Log: -rw-r--r--. 1 atlas atlas  486088 Oct 23 12:01 pilot3.tar.gz
2024-10-24 02:05:05 (15596): Guest Log: -rw-r--r--. 1 atlas atlas    5654 Oct 23 12:26 queuedata.json
2024-10-24 02:05:05 (15596): Guest Log: -rwx------. 1 atlas atlas   33946 Oct 23 12:27 runpilot2-wrapper.sh
2024-10-24 02:05:05 (15596): Guest Log: -rwxr-xr-x. 1 atlas atlas    9358 Oct 23 17:00 init_data.xml
2024-10-24 02:05:05 (15596): Guest Log: -rwxr-xr-x. 1 atlas atlas  499787 Oct 23 17:00 input.tar.gz
2024-10-24 02:05:05 (15596): Guest Log: -rwxr-xr-x. 1 atlas atlas   17539 Oct 23 17:00 start_atlas.sh
2024-10-24 02:05:05 (15596): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Oct 23 17:00 EVNT.41780202._000022.pool.root.1 -> /data/./ATLAS.root_0
2024-10-24 02:05:05 (15596): Guest Log: -rw-r--r--. 1 atlas atlas    2886 Oct 23 17:01 pandaJob.out
2024-10-24 02:05:05 (15596): Guest Log: -rw-------. 1 atlas atlas     452 Oct 23 17:01 setup.sh.local
2024-10-24 02:05:05 (15596): Guest Log: -rw-------. 1 atlas atlas 1025450 Oct 23 17:01 agis_schedconf.cvmfs.json
2024-10-24 02:05:05 (15596): Guest Log: drwx------. 4 atlas atlas    4096 Oct 23 17:02 pilot3
2024-10-24 02:05:05 (15596): Guest Log: -rw-------. 1 atlas atlas      95 Oct 23 23:02 pilot_heartbeat.json
2024-10-24 02:05:05 (15596): Guest Log: -rw-------. 1 atlas atlas       0 Oct 23 23:02 memory_monitor_summary.json
2024-10-24 02:05:05 (15596): Guest Log: -rw-------. 1 atlas atlas  970214 Oct 23 23:02 log.41780205._000086.job.log.tgz.1
2024-10-24 02:05:05 (15596): Guest Log: -rw-------. 1 atlas atlas 1611897 Oct 23 23:02 agis_ddmendpoints.agis.ALL.json
2024-10-24 02:05:05 (15596): Guest Log: -rw-------. 1 atlas atlas    9802 Oct 23 23:03 heartbeat.json
2024-10-24 02:05:05 (15596): Guest Log: -rw-------. 1 atlas atlas    4584 Oct 23 23:03 pilotlog.txt
2024-10-24 02:05:05 (15596): Guest Log: -rw-------. 1 atlas atlas 1790724 Oct 23 23:03 log.41780205._000086.job.log.1
2024-10-24 02:05:05 (15596): Guest Log: -rw-------. 1 atlas atlas     186 Oct 23 23:03 output.list
2024-10-24 02:05:05 (15596): Guest Log: -rw-r--r--. 1 atlas atlas     620 Oct 23 23:03 runtime_log
2024-10-24 02:05:05 (15596): Guest Log: -rw-------. 1 atlas atlas 2785280 Oct 23 23:03 result.tar.gz
2024-10-24 02:05:05 (15596): Guest Log: -rw-r--r--. 1 atlas atlas   11083 Oct 23 23:03 runtime_log.err
2024-10-24 02:05:05 (15596): Guest Log: -rw-------. 1 atlas atlas     642 Oct 23 23:03 bMMODmKdpN6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmNjWLDmXetutn.diag
2024-10-24 02:05:05 (15596): Guest Log: Looking for outputfile HITS.41780205._000086.pool.root.1
2024-10-24 02:05:05 (15596): Guest Log: No HITS file was produced
2024-10-24 02:05:05 (15596): Guest Log: Successfully finished the ATLAS job!
2024-10-24 02:05:05 (15596): Guest Log: Copying the results back to the shared directory!
2024-10-24 02:05:05 (15596): Guest Log:  *** Contents of shared directory: ***
2024-10-24 02:05:05 (15596): Guest Log: total 373064
2024-10-24 02:05:05 (15596): Guest Log: -rwxrwxrwx. 1 root root 378692993 Oct 23 17:00 ATLAS.root_0
2024-10-24 02:05:05 (15596): Guest Log: -rwxrwxrwx. 1 root root      9358 Oct 23 17:00 init_data.xml
2024-10-24 02:05:05 (15596): Guest Log: -rwxrwxrwx. 1 root root    499787 Oct 23 12:36 input.tar.gz
2024-10-24 02:05:05 (15596): Guest Log: -rwxrwxrwx. 1 root root   2785280 Oct 23  2024 result.tar.gz
2024-10-24 02:05:05 (15596): Guest Log: -rwxrwxrwx. 1 root root     17539 Oct 23 12:36 start_atlas.sh
2024-10-24 02:05:05 (15596): Guest Log:  *** Success! Shutting down the machine. ***
2024-10-24 02:05:06 (15596): VM Completion File Detected.
2024-10-24 02:05:06 (15596): Powering off VM.
2024-10-24 02:05:06 (15596): Successfully stopped VM.
2024-10-24 02:05:06 (15596): Deregistering VM. (boinc_35a8ba1b7fbf4eef, slot#3)
2024-10-24 02:05:06 (15596): Removing network bandwidth throttle group from VM.
2024-10-24 02:05:06 (15596): Removing VM from VirtualBox.
02:05:12 (15596): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN