| Name | GnHNDmRKpN6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDm7cWLDmQSPdqn_0 |
| Workunit | 226242002 |
| Created | 23 Oct 2024, 12:07:54 UTC |
| Sent | 23 Oct 2024, 12:08:59 UTC |
| Report deadline | 31 Oct 2024, 12:08:59 UTC |
| Received | 23 Oct 2024, 20:39:56 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 0 (0x00000000) |
| Computer ID | 10830555 |
| Run time | 8 hours 28 min 8 sec |
| CPU time | 15 hours 32 min 29 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 41.61 GFLOPS |
| Application version | ATLAS Simulation v3.01 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.53 GB |
| Peak swap size | 31.52 GB |
| Peak disk usage | 923.57 MB |
Stderr output
<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:10:22 (59629): wrapper (7.7.26015): starting
08:10:22 (59629): wrapper: running run_atlas (--nthreads 8)
[2024-10-23 08:10:22] Arguments: --nthreads 8
[2024-10-23 08:10:22] Threads: 8
[2024-10-23 08:10:22] Checking for CVMFS
[2024-10-23 08:10:22] Probing /cvmfs/atlas.cern.ch... OK
[2024-10-23 08:10:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-10-23 08:10:22] Running cvmfs_config stat atlas.cern.ch
[2024-10-23 08:10:22] /usr/bin/cvmfs_config: line 944: cd: /cvmfs/ligo.storage.igwn.org: Permission denied
[2024-10-23 08:10:22]
[2024-10-23 08:10:22] CVMFS is ok
[2024-10-23 08:10:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-10-23 08:10:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-10-23 08:10:22] Further information can be found at the LHC@home message board.
[2024-10-23 08:10:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-10-23 08:10:22] Checking for apptainer binary...
[2024-10-23 08:10:22] Using apptainer found in PATH at /usr/bin/apptainer
[2024-10-23 08:10:22] Running /usr/bin/apptainer --version
[2024-10-23 08:10:22] apptainer version 1.3.2-1.el7
[2024-10-23 08:10:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-10-23 08:10:23] c-212-15.aglt2.org
[2024-10-23 08:10:23] apptainer works
[2024-10-23 08:10:23] Set ATHENA_PROC_NUMBER=8
[2024-10-23 08:10:23] Set ATHENA_CORE_NUMBER=8
[2024-10-23 08:10:23] Starting ATLAS job with PandaID=6376519925
[2024-10-23 08:10:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-10-23 16:38:27] *** The last 200 lines of the pilot log: ***
[2024-10-23 16:38:27] File "/tmp/boinchome/slots/5/pilot3/pilot/util/monitoring.py", line 109, in job_monitor_tasks
[2024-10-23 16:38:27] cpuconsumptiontime = get_current_cpu_consumption_time(job.pid)
[2024-10-23 16:38:27] File "/tmp/boinchome/slots/5/pilot3/pilot/util/processes.py", line 600, in get_current_cpu_consumption_time
[2024-10-23 16:38:27] _, ps_cache, _ = execute("ps -eo pid,ppid -m", mute=True, timeout=60)
[2024-10-23 16:38:27] File "/tmp/boinchome/slots/5/pilot3/pilot/util/container.py", line 98, in execute
[2024-10-23 16:38:27] process = subprocess.Popen(exe,
[2024-10-23 16:38:27] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.19-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-10-23 16:38:27] self._execute_child(args, executable, preexec_fn, close_fds,
[2024-10-23 16:38:27] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.19-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-10-23 16:38:27] raise child_exception_type(errno_num, err_msg, err_filename)
[2024-10-23 16:38:27] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-10-23 16:38:27]
[2024-10-23 16:38:27] 2024-10-23 20:35:47,694 | WARNING | will send preliminary diagnostics (and pretend job is still running)=Exception caught: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-10-23 16:38:27] 2024-10-23 20:35:47,694 | INFO | pilot will not update the server (heartbeat message will be written to file)
[2024-10-23 16:38:27] 2024-10-23 20:35:47,694 | INFO | log transfer has not been attempted: IN_PROGRESS
[2024-10-23 16:38:27] 2024-10-23 20:35:47,694 | INFO | job 6376519925 has state 'running' - writing heartbeat
[2024-10-23 16:38:27] 2024-10-23 20:35:47,695 | INFO | payload/TRF did not report the number of read events
[2024-10-23 16:38:27] 2024-10-23 20:35:47,716 | INFO | executing command: lscpu
[2024-10-23 16:38:27] 2024-10-23 20:35:47,748 | WARNING | exception caught: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-10-23 16:38:27] 2024-10-23 20:35:50,252 | INFO | monitor loop #1943: job 0:6376519925 is in state 'failed'
[2024-10-23 16:38:27] 2024-10-23 20:35:50,252 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2024-10-23 16:38:27] 2024-10-23 20:35:52,757 | INFO | monitor loop #1944: job 0:6376519925 is in state 'failed'
[2024-10-23 16:38:27] 2024-10-23 20:35:52,757 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2024-10-23 16:38:27] 2024-10-23 20:35:53,481 | WARNING | job:queue_monitor:received graceful stop - abort after this iteration
[2024-10-23 16:38:27] 2024-10-23 20:35:53,481 | WARNING | since job:queue_monitor is responsible for sending job updates, we sleep for 20 s
[2024-10-23 16:38:27] 2024-10-23 20:35:53,481 | WARNING | job:job_monitor:received graceful stop - abort after this iteration
[2024-10-23 16:38:27] 2024-10-23 20:35:53,481 | INFO | will abort loop
[2024-10-23 16:38:27] 2024-10-23 20:35:53,521 | INFO | all data control threads have been joined
[2024-10-23 16:38:27] 2024-10-23 20:35:54,446 | INFO | found 1 job(s) in 20 queues
[2024-10-23 16:38:27] 2024-10-23 20:35:54,446 | INFO | aborting job 6376519925
[2024-10-23 16:38:27] 2024-10-23 20:35:54,446 | WARNING | could not find signal name for signal number None - using SIGTERM
[2024-10-23 16:38:27] 2024-10-23 20:35:54,495 | INFO | [job] job monitor thread has finished
[2024-10-23 16:38:27] 2024-10-23 20:35:54,541 | INFO | [data] control thread has finished
[2024-10-23 16:38:27] 2024-10-23 20:35:54,583 | WARNING | pilot monitor received instruction that args.graceful_stop has been set
[2024-10-23 16:38:27] 2024-10-23 20:35:54,583 | WARNING | will wait for a maximum of 300 s for threads to finish
[2024-10-23 16:38:27] 2024-10-23 20:35:54,583 | INFO | [payload] run_realtimelog thread has finished
[2024-10-23 16:38:27] 2024-10-23 20:35:54,587 | INFO | [job] validate thread has finished
[2024-10-23 16:38:27] 2024-10-23 20:35:54,597 | INFO | [payload] validate_pre thread has finished
[2024-10-23 16:38:27] 2024-10-23 20:35:54,750 | INFO | all payload control threads have been joined
[2024-10-23 16:38:27] 2024-10-23 20:35:54,850 | INFO | all job control threads have been joined
[2024-10-23 16:38:27] 2024-10-23 20:35:55,033 | INFO | [job] retrieve thread has finished
[2024-10-23 16:38:27] 2024-10-23 20:35:55,133 | INFO | [payload] validate_post thread has finished
[2024-10-23 16:38:27] 2024-10-23 20:35:55,661 | INFO | [payload] failed_post thread has finished
[2024-10-23 16:38:27] 2024-10-23 20:35:55,755 | INFO | [payload] control thread has finished
[2024-10-23 16:38:27] 2024-10-23 20:35:55,857 | INFO | [job] control thread has finished
[2024-10-23 16:38:27] 2024-10-23 20:35:55,890 | INFO | [job] create_data_payload thread has finished
[2024-10-23 16:38:27] 2024-10-23 20:35:55,957 | INFO | [data] copytool_in thread has finished
[2024-10-23 16:38:27] 2024-10-23 20:35:56,089 | WARNING | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-10-23 16:38:27] 2024-10-23 20:35:59,081 | INFO | [payload] execute_payloads thread has finished
[2024-10-23 16:38:27] 2024-10-23 20:36:00,099 | INFO | [data] queue_monitor thread has finished
[2024-10-23 16:38:27] 2024-10-23 20:36:14,584 | INFO | job 6376519925 has state=failed
[2024-10-23 16:38:27] 2024-10-23 20:36:14,584 | INFO | preparing for final server update for job 6376519925 in state='failed'
[2024-10-23 16:38:27] 2024-10-23 20:36:14,703 | WARNING | job_aborted has been set - aborting pilot monitoring
[2024-10-23 16:38:27] 2024-10-23 20:36:14,703 | INFO | [monitor] control thread has ended
[2024-10-23 16:38:27] 2024-10-23 20:36:15,547 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:36:17,566 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:36:19,577 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:36:21,587 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:36:23,597 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:36:25,611 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:36:27,623 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:36:29,637 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:36:31,651 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:36:33,661 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:36:35,673 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:36:37,687 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:36:39,701 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:36:41,713 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:36:43,727 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:36:45,741 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:36:47,755 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:36:49,767 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:36:51,781 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:36:53,792 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:36:55,802 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:36:57,812 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:36:59,823 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:37:01,837 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:37:03,851 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:37:05,862 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:37:07,873 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:37:09,886 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:37:11,897 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:37:13,911 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:37:15,923 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:37:17,937 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:37:19,962 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:37:21,973 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:37:23,987 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:37:26,001 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:37:28,012 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:37:30,022 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:37:32,033 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:37:34,043 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:37:36,055 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:37:38,066 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:37:40,077 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:37:42,091 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:37:44,103 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:37:46,117 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:37:48,131 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:37:50,142 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:37:52,153 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:37:54,167 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:37:56,182 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:37:58,193 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:38:00,206 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:38:02,217 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:38:04,231 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:38:06,242 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:38:08,254 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:38:09,824 | INFO | proceeding with final server update
[2024-10-23 16:38:27] 2024-10-23 20:38:09,826 | INFO | this job has now completed (state=failed)
[2024-10-23 16:38:27] 2024-10-23 20:38:09,826 | INFO | pilot will not update the server (heartbeat message will be written to file)
[2024-10-23 16:38:27] 2024-10-23 20:38:09,826 | INFO | log transfer has not been attempted: IN_PROGRESS
[2024-10-23 16:38:27] 2024-10-23 20:38:09,827 | INFO | job 6376519925 has state 'failed' - writing heartbeat
[2024-10-23 16:38:27] 2024-10-23 20:38:09,841 | INFO | payload/TRF did not report the number of read events
[2024-10-23 16:38:27] 2024-10-23 20:38:09,926 | INFO | executing command: lscpu
[2024-10-23 16:38:27] File "/tmp/boinchome/slots/5/pilot3/pilot/common/exception.py", line 466, in run
[2024-10-23 16:38:27] self._target(**self.kwargs)
[2024-10-23 16:38:27] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 2638, in queue_monitor
[2024-10-23 16:38:27] update_server(job, args)
[2024-10-23 16:38:27] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 2687, in update_server
[2024-10-23 16:38:27] send_state(job, args, job.state, metadata=metadata)
[2024-10-23 16:38:27] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 430, in send_state
[2024-10-23 16:38:27] data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2024-10-23 16:38:27] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 757, in get_data_structure
[2024-10-23 16:38:27] cpumodel = get_cpu_cores(cpumodel) # add the CPU cores if not present
[2024-10-23 16:38:27] File "/tmp/boinchome/slots/5/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores
[2024-10-23 16:38:27] ec, stdout = lscpu()
[2024-10-23 16:38:27] File "/tmp/boinchome/slots/5/pilot3/pilot/util/workernode.py", line 333, in lscpu
[2024-10-23 16:38:27] ec, stdout, _ = execute(cmd)
[2024-10-23 16:38:27] File "/tmp/boinchome/slots/5/pilot3/pilot/util/container.py", line 98, in execute
[2024-10-23 16:38:27] process = subprocess.Popen(exe,
[2024-10-23 16:38:27] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.19-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-10-23 16:38:27] self._execute_child(args, executable, preexec_fn, close_fds,
[2024-10-23 16:38:27] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.19-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-10-23 16:38:27] raise child_exception_type(errno_num, err_msg, err_filename)
[2024-10-23 16:38:27] unexpected exception caught by thread run() function: (<class 'OSError'>, OSError(107, 'Transport endpoint is not connected'), <traceback object at 0x7f4a432bc800>)
[2024-10-23 16:38:27] Traceback (most recent call last):
[2024-10-23 16:38:27] File "/tmp/boinchome/slots/5/pilot3/pilot/common/exception.py", line 466, in run
[2024-10-23 16:38:27] self._target(**self.kwargs)
[2024-10-23 16:38:27] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 2638, in queue_monitor
[2024-10-23 16:38:27] update_server(job, args)
[2024-10-23 16:38:27] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 2687, in update_server
[2024-10-23 16:38:27] send_state(job, args, job.state, metadata=metadata)
[2024-10-23 16:38:27] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 430, in send_state
[2024-10-23 16:38:27] data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2024-10-23 16:38:27] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 757, in get_data_structure
[2024-10-23 16:38:27] cpumodel = get_cpu_cores(cpumodel) # add the CPU cores if not present
[2024-10-23 16:38:27] File "/tmp/boinchome/slots/5/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores
[2024-10-23 16:38:27] ec, stdout = lscpu()
[2024-10-23 16:38:27] File "/tmp/boinchome/slots/5/pilot3/pilot/util/workernode.py", line 333, in lscpu
[2024-10-23 16:38:27] ec, stdout, _ = execute(cmd)
[2024-10-23 16:38:27] File "/tmp/boinchome/slots/5/pilot3/pilot/util/container.py", line 98, in execute
[2024-10-23 16:38:27] process = subprocess.Popen(exe,
[2024-10-23 16:38:27] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.19-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-10-23 16:38:27] self._execute_child(args, executable, preexec_fn, close_fds,
[2024-10-23 16:38:27] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.19-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-10-23 16:38:27] raise child_exception_type(errno_num, err_msg, err_filename)
[2024-10-23 16:38:27] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-10-23 16:38:27]
[2024-10-23 16:38:27] None
[2024-10-23 16:38:27] exception has been put in bucket queue belonging to thread 'queue_monitor'
[2024-10-23 16:38:27] setting graceful stop in 10 s since there is no point in continuing
[2024-10-23 16:38:27] 2024-10-23 20:38:10,267 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:38:12,277 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:38:14,290 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:38:16,302 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:38:18,312 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139957178435392)>', '<ExcThread(queue_monitor, started 139956903311104)>']
[2024-10-23 16:38:27] 2024-10-23 20:38:20,323 | INFO | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 139957178435392)>'])
[2024-10-23 16:38:27] 2024-10-23 20:38:25,351 | INFO | all workflow threads have been joined
[2024-10-23 16:38:27] 2024-10-23 20:38:25,351 | INFO | end of generic workflow (traces error code: 0)
[2024-10-23 16:38:27] 2024-10-23 20:38:25,351 | INFO | traces error code: 0
[2024-10-23 16:38:27] 2024-10-23 20:38:25,352 | INFO | pilot has finished (exit code=0, shell exit code=0)
[2024-10-23 16:38:27] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 16:38:27] ==== pilot stdout END ====
[2024-10-23 16:38:27] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 16:38:27] ==== wrapper stdout RESUME ====
[2024-10-23 16:38:27] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 16:38:27] pilotpid: 83866
[2024-10-23 16:38:27] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 16:38:27] Pilot exit status: 0
[2024-10-23 16:38:27] ./runpilot2-wrapper.sh: line 973: /usr/bin/cut: Transport endpoint is not connected
[2024-10-23 16:38:27] ./runpilot2-wrapper.sh: line 973: /usr/bin/xargs: Transport endpoint is not connected
[2024-10-23 16:38:27] ./runpilot2-wrapper.sh: line 973: /usr/bin/cat: Transport endpoint is not connected
[2024-10-23 16:38:27] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 16:38:27] pandaids:
[2024-10-23 16:38:27] ./runpilot2-wrapper.sh: line 511: /usr/bin/ps: Transport endpoint is not connected
[2024-10-23 16:38:27] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 16:38:27] No supervise_pilot CHILD process found
[2024-10-23 16:38:27] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 16:38:27] Test setup, not cleaning
[2024-10-23 16:38:27] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 16:38:27] ==== wrapper stdout END ====
[2024-10-23 16:38:27] ./runpilot2-wrapper.sh: line 10: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 16:38:27] ==== wrapper stderr END ====
[2024-10-23 16:38:27] ./runpilot2-wrapper.sh: line 532: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 16:38:27] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-10-23 16:38:27] apfmon messages muted
[2024-10-23 16:38:27] *** Error codes and diagnostics ***
[2024-10-23 16:38:27] *** Listing of results directory ***
[2024-10-23 16:38:27] total 357444
[2024-10-23 16:38:27] -rw-r--r-- 1 boincer umatlas 486088 Oct 23 08:01 pilot3.tar.gz
[2024-10-23 16:38:27] -rw-r--r-- 1 boincer umatlas 5654 Oct 23 08:06 queuedata.json
[2024-10-23 16:38:27] -rwx------ 1 boincer umatlas 33946 Oct 23 08:07 runpilot2-wrapper.sh
[2024-10-23 16:38:27] -rw-r--r-- 1 boincer umatlas 100 Oct 23 08:10 wrapper_26015_x86_64-pc-linux-gnu
[2024-10-23 16:38:27] -rwxr-xr-x 1 boincer umatlas 7986 Oct 23 08:10 run_atlas
[2024-10-23 16:38:27] -rw-r--r-- 1 boincer umatlas 105 Oct 23 08:10 job.xml
[2024-10-23 16:38:27] -rw-r--r-- 2 boincer umatlas 499774 Oct 23 08:10 input.tar.gz
[2024-10-23 16:38:27] -rw-r--r-- 2 boincer umatlas 356520401 Oct 23 08:10 EVNT.41779602._000002.pool.root.1
[2024-10-23 16:38:27] -rw-r--r-- 2 boincer umatlas 17539 Oct 23 08:10 start_atlas.sh
[2024-10-23 16:38:27] drwxrwx--x 2 boincer umatlas 4096 Oct 23 08:10 shared
[2024-10-23 16:38:27] -rw-r--r-- 1 boincer umatlas 0 Oct 23 08:10 boinc_lockfile
[2024-10-23 16:38:27] -rw-r--r-- 1 boincer umatlas 2850 Oct 23 08:10 pandaJob.out
[2024-10-23 16:38:27] -rw------- 1 boincer umatlas 424 Oct 23 08:10 setup.sh.local
[2024-10-23 16:38:27] -rw------- 1 boincer umatlas 1025357 Oct 23 08:10 agis_schedconf.cvmfs.json
[2024-10-23 16:38:27] -rw------- 1 boincer umatlas 1611897 Oct 23 08:10 agis_ddmendpoints.agis.ALL.json
[2024-10-23 16:38:27] drwx------ 4 boincer umatlas 4096 Oct 23 08:10 pilot3
[2024-10-23 16:38:27] -rw------- 1 boincer umatlas 906 Oct 23 16:24 heartbeat.json
[2024-10-23 16:38:27] -rw-r--r-- 1 boincer umatlas 6302 Oct 23 16:30 init_data.xml
[2024-10-23 16:38:27] -rw------- 1 boincer umatlas 95 Oct 23 16:35 pilot_heartbeat.json
[2024-10-23 16:38:27] -rw-r--r-- 1 boincer umatlas 531 Oct 23 16:35 boinc_task_state.xml
[2024-10-23 16:38:27] -rw------- 1 boincer umatlas 1099 Oct 23 16:35 memory_monitor_summary.json
[2024-10-23 16:38:27] -rw------- 1 boincer umatlas 2819321 Oct 23 16:38 pilotlog.txt
[2024-10-23 16:38:27] -rw------- 1 boincer umatlas 2845565 Oct 23 16:38 log.41779604._000009.job.log.1
[2024-10-23 16:38:27] -rw-r--r-- 1 boincer umatlas 428 Oct 23 16:38 runtime_log
[2024-10-23 16:38:27] -rw------- 1 boincer umatlas 622 Oct 23 16:38 GnHNDmRKpN6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDm7cWLDmQSPdqn.diag
[2024-10-23 16:38:27] drwxrwx--- 3 boincer umatlas 4096 Oct 23 16:38 PanDA_Pilot-6376519925
[2024-10-23 16:38:27] -rw-r--r-- 1 boincer umatlas 28 Oct 23 16:38 wrapper_checkpoint.txt
[2024-10-23 16:38:27] -rw-r--r-- 1 boincer umatlas 11290 Oct 23 16:38 runtime_log.err
[2024-10-23 16:38:27] -rw-r--r-- 1 boincer umatlas 8192 Oct 23 16:38 boinc_mmap_file
[2024-10-23 16:38:27] -rw-r--r-- 1 boincer umatlas 28011 Oct 23 16:38 stderr.txt
[2024-10-23 16:38:27] No HITS result produced
[2024-10-23 16:38:27] *** Contents of shared directory: ***
[2024-10-23 16:38:27] total 348680
[2024-10-23 16:38:27] -rw-r--r-- 2 boincer umatlas 499774 Oct 23 08:10 input.tar.gz
[2024-10-23 16:38:27] -rw-r--r-- 2 boincer umatlas 356520401 Oct 23 08:10 ATLAS.root_0
[2024-10-23 16:38:27] -rw-r--r-- 2 boincer umatlas 17539 Oct 23 08:10 start_atlas.sh
16:38:29 (59629): run_atlas exited; CPU time 1370.061219
16:38:29 (59629): called boinc_finish(0)
</stderr_txt>
<message>
upload failure: <file_xfer_error>
<file_name>GnHNDmRKpN6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDm7cWLDmQSPdqn_0_r629162160_ATLAS_result</file_name>
<error_code>-161 (not found)</error_code>
</file_xfer_error>
</message>
]]>
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