Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
05:52:47 (1291000): wrapper (7.7.26015): starting
05:52:47 (1291000): wrapper: running run_atlas (--nthreads 12)
[2024-10-22 05:52:47] Arguments: --nthreads 12
[2024-10-22 05:52:47] Threads: 12
[2024-10-22 05:52:47] Checking for CVMFS
[2024-10-22 05:52:47] Probing /cvmfs/atlas.cern.ch... OK
[2024-10-22 05:52:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-10-22 05:52:47] Running cvmfs_config stat atlas.cern.ch
[2024-10-22 05:52:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-10-22 05:52:48] 2.11.3.0 559175 18775 172756 138606 1 56 3351869 4096000 0 130560 0 318537205 99.999 4355072 204 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.0.181:3128 1
[2024-10-22 05:52:48] CVMFS is ok
[2024-10-22 05:52:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-10-22 05:52:48] Checking for apptainer binary...
[2024-10-22 05:52:48] apptainer is not installed, using version from CVMFS
[2024-10-22 05:52:48] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-10-22 05:52:49] epyc7v12
[2024-10-22 05:52:49] apptainer works
[2024-10-22 05:52:49] Set ATHENA_PROC_NUMBER=12
[2024-10-22 05:52:49] Set ATHENA_CORE_NUMBER=12
[2024-10-22 05:52:49] Starting ATLAS job with PandaID=6374798237
[2024-10-22 05:52:49] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-10-22 07:06:21]  *** The last 200 lines of the pilot log: ***
[2024-10-22 07:06:21]  direct_access_lan=False
[2024-10-22 07:06:21]  direct_access_wan=False
[2024-10-22 07:06:21]  domain=
[2024-10-22 07:06:21]  filesize=355293
[2024-10-22 07:06:21]  filetype=log
[2024-10-22 07:06:21]  guid=61b78425-3f26-4f77-a00a-b5e334fb12e7
[2024-10-22 07:06:21]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-10-22 07:06:21]  is_altstaged=None
[2024-10-22 07:06:21]  is_tar=False
[2024-10-22 07:06:21]  lfn=log.41690988._073936.job.log.tgz.1
[2024-10-22 07:06:21]  mtime=0
[2024-10-22 07:06:21]  protocol_id=None
[2024-10-22 07:06:21]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-10-22 07:06:21]  replicas=None
[2024-10-22 07:06:21]  scope=mc23_13p6TeV
[2024-10-22 07:06:21]  status=None
[2024-10-22 07:06:21]  status_code=0
[2024-10-22 07:06:21]  storage_token=
[2024-10-22 07:06:21]  surl=/opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-6374798237/log.41690988._073936.job.log.tgz.1
[2024-10-22 07:06:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8b/20/log.41690988._073936.job.log.tgz.1
[2024-10-22 07:06:21]  workdir=None
[2024-10-22 07:06:21] ]
[2024-10-22 07:06:21] 2024-10-22 07:05:59,166 | INFO     | transferring file log.41690988._073936.job.log.tgz.1 from /opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-6374798237/log.41690988._073936.job.log.tgz.1 t
[2024-10-22 07:06:21] 2024-10-22 07:05:59,166 | INFO     | executing command: /usr/bin/env mv /opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-6374798237/log.41690988._073936.job.log.tgz.1 /opt/boinc/instance_home
[2024-10-22 07:06:21] 2024-10-22 07:05:59,195 | INFO     | adding to output.list: log.41690988._073936.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8b/20/log.41690988._073936.job.log.tg
[2024-10-22 07:06:21] 2024-10-22 07:05:59,196 | INFO     | alt stage-out settings: ['pl', 'pw', 'w', 'default'], is_unified=False, altstageout=False, remain_files=0, has_altstorage=True
[2024-10-22 07:06:21] 2024-10-22 07:05:59,196 | INFO     | summary of transferred files:
[2024-10-22 07:06:21] 2024-10-22 07:05:59,196 | INFO     |  -- lfn=log.41690988._073936.job.log.tgz.1, status_code=0, status=transferred
[2024-10-22 07:06:21] 2024-10-22 07:05:59,196 | INFO     | stage-out finished correctly
[2024-10-22 07:06:21] 2024-10-22 07:06:00,017 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-10-22 07:06:21] 2024-10-22 07:06:01,341 | INFO     | job 6374798237 has state=finished
[2024-10-22 07:06:21] 2024-10-22 07:06:01,341 | INFO     | preparing for final server update for job 6374798237 in state='finished'
[2024-10-22 07:06:21] 2024-10-22 07:06:01,342 | INFO     | this job has now completed (state=finished)
[2024-10-22 07:06:21] 2024-10-22 07:06:01,342 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-10-22 07:06:21] 2024-10-22 07:06:01,342 | INFO     | log transfer has been attempted: DONE
[2024-10-22 07:06:21] 2024-10-22 07:06:01,342 | INFO     | job 6374798237 has finished - writing final server update
[2024-10-22 07:06:21] 2024-10-22 07:06:01,342 | INFO     | total number of processed events: 400 (read)
[2024-10-22 07:06:21] 2024-10-22 07:06:01,373 | INFO     | executing command: lscpu
[2024-10-22 07:06:21] 2024-10-22 07:06:01,478 | INFO     | found 64 cores (64 cores per socket, 1 sockets)
[2024-10-22 07:06:21] 2024-10-22 07:06:01,514 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-10-22 07:06:21] 2024-10-22 07:06:08,730 | INFO     | CPU arch script returned: x86-64-v3
[2024-10-22 07:06:21] 2024-10-22 07:06:08,730 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-6374798237/memory_monitor_summary.json (trf name=prmon)
[2024-10-22 07:06:21] 2024-10-22 07:06:08,731 | INFO     | extracted standard info from prmon json
[2024-10-22 07:06:21] 2024-10-22 07:06:08,731 | INFO     | extracted standard memory fields from prmon json
[2024-10-22 07:06:21] 2024-10-22 07:06:08,731 | WARNING  | GPU info not found in prmon json: 'gpu'
[2024-10-22 07:06:21] 2024-10-22 07:06:08,731 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-10-22 07:06:21] 2024-10-22 07:06:08,732 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-10-22 07:06:21] 2024-10-22 07:06:08,733 | INFO     | fitting pss+swap vs Time
[2024-10-22 07:06:21] 2024-10-22 07:06:08,733 | INFO     | model: linear, x: [1729576729.0, 1729576790.0, 1729576851.0, 1729576912.0, 1729576973.0, 1729577034.0, 1729577095.0, 1729577156.0, 1729577217.0, 1729577278.0, 1729
[2024-10-22 07:06:21] 2024-10-22 07:06:08,739 | INFO     | sum of square deviations: 81266640.0
[2024-10-22 07:06:21] 2024-10-22 07:06:08,740 | INFO     | sum of deviations: 4647846627.0
[2024-10-22 07:06:21] 2024-10-22 07:06:08,740 | INFO     | mean x: 1729578650.5
[2024-10-22 07:06:21] 2024-10-22 07:06:08,740 | INFO     | mean y: 2683403.84375
[2024-10-22 07:06:21] 2024-10-22 07:06:08,740 | INFO     | -- intersect: -98916335480.87495
[2024-10-22 07:06:21] 2024-10-22 07:06:08,740 | INFO     | intersect: -98916335480.87495
[2024-10-22 07:06:21] 2024-10-22 07:06:08,740 | INFO     | chi2: 0.11985053452171926
[2024-10-22 07:06:21] 2024-10-22 07:06:08,741 | INFO     | -- intersect: -98916335480.87495
[2024-10-22 07:06:21] 2024-10-22 07:06:08,741 | INFO     | current memory leak: 57.19 B/s (using 64 data points, chi2=0.12)
[2024-10-22 07:06:21] 2024-10-22 07:06:08,742 | INFO     | ..............................
[2024-10-22 07:06:21] 2024-10-22 07:06:08,742 | INFO     | . Timing measurements:
[2024-10-22 07:06:21] 2024-10-22 07:06:08,742 | INFO     | . get job = 0 s
[2024-10-22 07:06:21] 2024-10-22 07:06:08,742 | INFO     | . initial setup = 2 s
[2024-10-22 07:06:21] 2024-10-22 07:06:08,742 | INFO     | . payload setup = 12 s
[2024-10-22 07:06:21] 2024-10-22 07:06:08,742 | INFO     | . stage-in = 0 s
[2024-10-22 07:06:21] 2024-10-22 07:06:08,742 | INFO     | . payload execution = 4338 s
[2024-10-22 07:06:21] 2024-10-22 07:06:08,742 | INFO     | . stage-out = 0 s
[2024-10-22 07:06:21] 2024-10-22 07:06:08,742 | INFO     | . log creation = 0 s
[2024-10-22 07:06:21] 2024-10-22 07:06:08,742 | INFO     | ..............................
[2024-10-22 07:06:21] 2024-10-22 07:06:08,844 | INFO     | 
[2024-10-22 07:06:21] 2024-10-22 07:06:08,845 | INFO     | job summary report
[2024-10-22 07:06:21] 2024-10-22 07:06:08,845 | INFO     | --------------------------------------------------
[2024-10-22 07:06:21] 2024-10-22 07:06:08,845 | INFO     | PanDA job id: 6374798237
[2024-10-22 07:06:21] 2024-10-22 07:06:08,845 | INFO     | task id: 41690988
[2024-10-22 07:06:21] 2024-10-22 07:06:08,845 | INFO     | errors: (none)
[2024-10-22 07:06:21] 2024-10-22 07:06:08,846 | INFO     | status: LOG_TRANSFER = DONE 
[2024-10-22 07:06:21] 2024-10-22 07:06:08,846 | INFO     | pilot state: finished 
[2024-10-22 07:06:21] 2024-10-22 07:06:08,846 | INFO     | transexitcode: 0
[2024-10-22 07:06:21] 2024-10-22 07:06:08,846 | INFO     | exeerrorcode: 0
[2024-10-22 07:06:21] 2024-10-22 07:06:08,846 | INFO     | exeerrordiag: 
[2024-10-22 07:06:21] 2024-10-22 07:06:08,846 | INFO     | exitcode: 0
[2024-10-22 07:06:21] 2024-10-22 07:06:08,846 | INFO     | exitmsg: OK
[2024-10-22 07:06:21] 2024-10-22 07:06:08,846 | INFO     | cpuconsumptiontime: 45874 s
[2024-10-22 07:06:21] 2024-10-22 07:06:08,846 | INFO     | nevents: 400
[2024-10-22 07:06:21] 2024-10-22 07:06:08,846 | INFO     | neventsw: 0
[2024-10-22 07:06:21] 2024-10-22 07:06:08,846 | INFO     | pid: 1302694
[2024-10-22 07:06:21] 2024-10-22 07:06:08,846 | INFO     | pgrp: 1302694
[2024-10-22 07:06:21] 2024-10-22 07:06:08,846 | INFO     | corecount: 12
[2024-10-22 07:06:21] 2024-10-22 07:06:08,846 | INFO     | event service: False
[2024-10-22 07:06:21] 2024-10-22 07:06:08,846 | INFO     | sizes: {0: 2423985, 1: 2424184, 8: 2424390, 11: 2424418, 4355: 2450348, 4356: 2459418, 4357: 2459602, 4365: 2459772}
[2024-10-22 07:06:21] 2024-10-22 07:06:08,847 | INFO     | --------------------------------------------------
[2024-10-22 07:06:21] 2024-10-22 07:06:08,847 | INFO     | 
[2024-10-22 07:06:21] 2024-10-22 07:06:08,847 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/2
[2024-10-22 07:06:21] 2024-10-22 07:06:08,880 | INFO     | queue jobs had 0 job(s) [purged]
[2024-10-22 07:06:21] 2024-10-22 07:06:08,881 | INFO     | queue payloads had 0 job(s) [purged]
[2024-10-22 07:06:21] 2024-10-22 07:06:08,881 | INFO     | queue data_in had 0 job(s) [purged]
[2024-10-22 07:06:21] 2024-10-22 07:06:08,881 | INFO     | queue data_out had 0 job(s) [purged]
[2024-10-22 07:06:21] 2024-10-22 07:06:08,881 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-10-22 07:06:21] 2024-10-22 07:06:08,881 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-10-22 07:06:21] 2024-10-22 07:06:08,881 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-10-22 07:06:21] 2024-10-22 07:06:08,881 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-10-22 07:06:21] 2024-10-22 07:06:08,881 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-10-22 07:06:21] 2024-10-22 07:06:08,882 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-10-22 07:06:21] 2024-10-22 07:06:08,882 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-10-22 07:06:21] 2024-10-22 07:06:08,882 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-10-22 07:06:21] 2024-10-22 07:06:08,882 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-10-22 07:06:21] 2024-10-22 07:06:08,882 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-10-22 07:06:21] 2024-10-22 07:06:08,882 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-10-22 07:06:21] 2024-10-22 07:06:08,882 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-10-22 07:06:21] 2024-10-22 07:06:08,882 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-10-22 07:06:21] 2024-10-22 07:06:08,882 | INFO     | queue completed_jobids has 1 job(s)
[2024-10-22 07:06:21] 2024-10-22 07:06:08,882 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-10-22 07:06:21] 2024-10-22 07:06:08,883 | INFO     | queue messages had 0 job(s) [purged]
[2024-10-22 07:06:21] 2024-10-22 07:06:08,883 | INFO     | job 6374798237 has completed (purged errors)
[2024-10-22 07:06:21] 2024-10-22 07:06:08,884 | INFO     | overall cleanup function is called
[2024-10-22 07:06:21] 2024-10-22 07:06:08,906 | WARNING  | process 1302694 is no longer using CPU - aborting
[2024-10-22 07:06:21] 2024-10-22 07:06:08,906 | INFO     | aborting job monitoring since job object (job id=6374798237) has expired
[2024-10-22 07:06:21] 2024-10-22 07:06:09,897 | INFO     | --- collectZombieJob: --- 10, [1302694]
[2024-10-22 07:06:21] 2024-10-22 07:06:09,897 | INFO     | zombie collector waiting for pid 1302694
[2024-10-22 07:06:21] 2024-10-22 07:06:09,897 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-10-22 07:06:21] 2024-10-22 07:06:09,897 | INFO     | collected zombie processes
[2024-10-22 07:06:21] 2024-10-22 07:06:09,897 | INFO     | will attempt to kill all subprocesses of pid=1302694
[2024-10-22 07:06:21] 2024-10-22 07:06:10,098 | INFO     | process IDs to be killed: [1302694] (in reverse order)
[2024-10-22 07:06:21] 2024-10-22 07:06:10,279 | WARNING  | get_process_commands() threw an exception: list index out of range
[2024-10-22 07:06:21] 2024-10-22 07:06:10,279 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-10-22 07:06:21] 2024-10-22 07:06:10,293 | INFO     | did not find any defunct processes belonging to 1302694
[2024-10-22 07:06:21] 2024-10-22 07:06:10,303 | INFO     | did not find any defunct processes belonging to 1302694
[2024-10-22 07:06:21] 2024-10-22 07:06:10,304 | INFO     | ready for new job
[2024-10-22 07:06:21] 2024-10-22 07:06:10,304 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-10-22 07:06:21] 2024-10-22 07:06:10,305 | INFO     | **************************************
[2024-10-22 07:06:21] 2024-10-22 07:06:10,305 | INFO     | ***  PanDA Pilot version 3.9.1.13  ***
[2024-10-22 07:06:21] 2024-10-22 07:06:10,305 | INFO     | **************************************
[2024-10-22 07:06:21] 2024-10-22 07:06:10,305 | INFO     | 
[2024-10-22 07:06:21] 2024-10-22 07:06:10,334 | INFO     | architecture information:
[2024-10-22 07:06:21] 2024-10-22 07:06:10,334 | INFO     | executing command: cat /etc/os-release
[2024-10-22 07:06:21] 2024-10-22 07:06:10,361 | INFO     | cat /etc/os-release:
[2024-10-22 07:06:21] NAME="CentOS Linux"
[2024-10-22 07:06:21] VERSION="7 (Core)"
[2024-10-22 07:06:21] ID="centos"
[2024-10-22 07:06:21] ID_LIKE="rhel fedora"
[2024-10-22 07:06:21] VERSION_ID="7"
[2024-10-22 07:06:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-10-22 07:06:21] ANSI_COLOR="0;31"
[2024-10-22 07:06:21] CPE_NAME="cpe:/o:centos:centos:7"
[2024-10-22 07:06:21] HOME_URL="https://www.centos.org/"
[2024-10-22 07:06:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-10-22 07:06:21] 
[2024-10-22 07:06:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-10-22 07:06:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-10-22 07:06:21] REDHAT_SUPPORT_PRODUCT="centos"
[2024-10-22 07:06:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-10-22 07:06:21] 
[2024-10-22 07:06:21] 2024-10-22 07:06:10,361 | INFO     | **************************************
[2024-10-22 07:06:21] 2024-10-22 07:06:10,864 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/2
[2024-10-22 07:06:21] 2024-10-22 07:06:10,887 | INFO     | sufficient remaining disk space (334828142592 B)
[2024-10-22 07:06:21] 2024-10-22 07:06:10,887 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-10-22 07:06:21] 2024-10-22 07:06:10,887 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-10-22 07:06:21] 2024-10-22 07:06:10,888 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-10-22 07:06:21] 2024-10-22 07:06:10,888 | INFO     | aborting loop
[2024-10-22 07:06:21] 2024-10-22 07:06:10,889 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-10-22 07:06:21] 2024-10-22 07:06:11,545 | INFO     | all job control threads have been joined
[2024-10-22 07:06:21] 2024-10-22 07:06:11,747 | INFO     | all data control threads have been joined
[2024-10-22 07:06:21] 2024-10-22 07:06:11,853 | INFO     | found 0 job(s) in 20 queues
[2024-10-22 07:06:21] 2024-10-22 07:06:11,853 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-10-22 07:06:21] 2024-10-22 07:06:11,853 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-10-22 07:06:21] 2024-10-22 07:06:11,889 | INFO     | [job] retrieve thread has finished
[2024-10-22 07:06:21] 2024-10-22 07:06:11,893 | INFO     | [job] job monitor thread has finished
[2024-10-22 07:06:21] 2024-10-22 07:06:11,933 | INFO     | [payload] failed_post thread has finished
[2024-10-22 07:06:21] 2024-10-22 07:06:11,945 | INFO     | all payload control threads have been joined
[2024-10-22 07:06:21] 2024-10-22 07:06:12,137 | INFO     | [payload] validate_post thread has finished
[2024-10-22 07:06:21] 2024-10-22 07:06:12,293 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-10-22 07:06:21] 2024-10-22 07:06:12,377 | INFO     | [job] validate thread has finished
[2024-10-22 07:06:21] 2024-10-22 07:06:12,441 | INFO     | [data] copytool_in thread has finished
[2024-10-22 07:06:21] 2024-10-22 07:06:12,453 | INFO     | [job] create_data_payload thread has finished
[2024-10-22 07:06:21] 2024-10-22 07:06:12,549 | INFO     | [job] control thread has finished
[2024-10-22 07:06:21] 2024-10-22 07:06:12,673 | INFO     | [payload] execute_payloads thread has finished
[2024-10-22 07:06:21] 2024-10-22 07:06:12,749 | INFO     | [data] control thread has finished
[2024-10-22 07:06:21] 2024-10-22 07:06:12,801 | INFO     | [payload] run_realtimelog thread has finished
[2024-10-22 07:06:21] 2024-10-22 07:06:12,845 | INFO     | [payload] validate_pre thread has finished
[2024-10-22 07:06:21] 2024-10-22 07:06:12,949 | INFO     | [payload] control thread has finished
[2024-10-22 07:06:21] 2024-10-22 07:06:13,849 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-10-22 07:06:21] 2024-10-22 07:06:14,297 | INFO     | [data] copytool_out thread has finished
[2024-10-22 07:06:21] 2024-10-22 07:06:14,853 | INFO     | [job] queue monitor thread has finished
[2024-10-22 07:06:21] 2024-10-22 07:06:14,893 | INFO     | [data] queue_monitor thread has finished
[2024-10-22 07:06:21] 2024-10-22 07:06:16,497 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139679820482368)>', '<ExcThread(monitor, started 139679536867072)>']
[2024-10-22 07:06:21] 2024-10-22 07:06:16,873 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-10-22 07:06:21] 2024-10-22 07:06:16,873 | INFO     | [monitor] control thread has ended
[2024-10-22 07:06:21] 2024-10-22 07:06:21,521 | INFO     | all workflow threads have been joined
[2024-10-22 07:06:21] 2024-10-22 07:06:21,521 | INFO     | end of generic workflow (traces error code: 0)
[2024-10-22 07:06:21] 2024-10-22 07:06:21,521 | INFO     | traces error code: 0
[2024-10-22 07:06:21] 2024-10-22 07:06:21,522 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-10-22 07:06:21] 2024-10-22 07:06:21,621 [wrapper] ==== pilot stdout END ====
[2024-10-22 07:06:21] 2024-10-22 07:06:21,624 [wrapper] ==== wrapper stdout RESUME ====
[2024-10-22 07:06:21] 2024-10-22 07:06:21,627 [wrapper] pilotpid: 1295119
[2024-10-22 07:06:21] 2024-10-22 07:06:21,630 [wrapper] Pilot exit status: 0
[2024-10-22 07:06:21] 2024-10-22 07:06:21,643 [wrapper] pandaids: 6374798237
[2024-10-22 07:06:21] 2024-10-22 07:06:21,743 [wrapper] cleanup supervisor_pilot 1363940 1295120
[2024-10-22 07:06:21] 2024-10-22 07:06:21,746 [wrapper] Test setup, not cleaning
[2024-10-22 07:06:21] 2024-10-22 07:06:21,749 [wrapper] ==== wrapper stdout END ====
[2024-10-22 07:06:21] 2024-10-22 07:06:21,752 [wrapper] ==== wrapper stderr END ====
[2024-10-22 07:06:21] 2024-10-22 07:06:21,758 [wrapper] apfmon messages muted
[2024-10-22 07:06:21]  *** Error codes and diagnostics ***
[2024-10-22 07:06:21]     "exeErrorCode": 0,
[2024-10-22 07:06:21]     "exeErrorDiag": "",
[2024-10-22 07:06:21]     "pilotErrorCode": 0,
[2024-10-22 07:06:21]     "pilotErrorDiag": "",
[2024-10-22 07:06:21]  *** Listing of results directory ***
[2024-10-22 07:06:21] total 401724
[2024-10-22 07:06:21] -rw-r--r-- 1 boinc boinc    486088 Oct 22 05:36 pilot3.tar.gz
[2024-10-22 07:06:21] -rwx------ 1 boinc boinc     33946 Oct 22 05:51 runpilot2-wrapper.sh
[2024-10-22 07:06:21] -rw-r--r-- 1 boinc boinc      5654 Oct 22 05:51 queuedata.json
[2024-10-22 07:06:21] -rw-rw-r-- 1 boinc boinc       100 Oct 22 05:52 wrapper_26015_x86_64-pc-linux-gnu
[2024-10-22 07:06:21] -rwxr-xr-x 1 boinc boinc      7986 Oct 22 05:52 run_atlas
[2024-10-22 07:06:21] -rw-rw-r-- 1 boinc boinc       105 Oct 22 05:52 job.xml
[2024-10-22 07:06:21] -rw-r--r-- 2 boinc boinc     17539 Oct 22 05:52 start_atlas.sh
[2024-10-22 07:06:21] drwxrwx--x 2 boinc boinc      4096 Oct 22 05:52 shared
[2024-10-22 07:06:21] -rw-r--r-- 2 boinc boinc    499664 Oct 22 05:52 input.tar.gz
[2024-10-22 07:06:21] -rw-rw-r-- 1 boinc boinc      6957 Oct 22 05:52 init_data.xml
[2024-10-22 07:06:21] -rw-r--r-- 2 boinc boinc 223771966 Oct 22 05:52 EVNT.41690986._001919.pool.root.1
[2024-10-22 07:06:21] -rw-rw-r-- 1 boinc boinc         0 Oct 22 05:52 boinc_lockfile
[2024-10-22 07:06:21] -rw-rw-r-- 1 boinc boinc      2642 Oct 22 05:52 pandaJob.out
[2024-10-22 07:06:21] -rw------- 1 boinc boinc       460 Oct 22 05:52 setup.sh.local
[2024-10-22 07:06:21] -rw------- 1 boinc boinc   1023975 Oct 22 05:53 agis_schedconf.cvmfs.json
[2024-10-22 07:06:21] -rw------- 1 boinc boinc   1608777 Oct 22 05:53 agis_ddmendpoints.agis.ALL.json
[2024-10-22 07:06:21] drwx------ 4 boinc boinc      4096 Oct 22 05:53 pilot3
[2024-10-22 07:06:21] -rw------- 1 boinc boinc        95 Oct 22 07:05 pilot_heartbeat.json
[2024-10-22 07:06:21] -rw------- 1 boinc boinc 182116815 Oct 22 07:05 HITS.41690988._073936.pool.root.1
[2024-10-22 07:06:21] -rw-rw-r-- 1 boinc boinc       529 Oct 22 07:05 boinc_task_state.xml
[2024-10-22 07:06:21] -rw------- 1 boinc boinc      1013 Oct 22 07:05 memory_monitor_summary.json
[2024-10-22 07:06:21] -rw------- 1 boinc boinc    355293 Oct 22 07:05 log.41690988._073936.job.log.tgz.1
[2024-10-22 07:06:21] -rw------- 1 boinc boinc      7644 Oct 22 07:06 heartbeat.json
[2024-10-22 07:06:21] -rw-rw-r-- 1 boinc boinc        27 Oct 22 07:06 wrapper_checkpoint.txt
[2024-10-22 07:06:21] -rw-rw-r-- 1 boinc boinc      8192 Oct 22 07:06 boinc_mmap_file
[2024-10-22 07:06:21] -rw------- 1 boinc boinc      4239 Oct 22 07:06 pilotlog.txt
[2024-10-22 07:06:21] -rw------- 1 boinc boinc    452771 Oct 22 07:06 log.41690988._073936.job.log.1
[2024-10-22 07:06:21] -rw------- 1 boinc boinc       357 Oct 22 07:06 output.list
[2024-10-22 07:06:21] -rw-rw-r-- 1 boinc boinc       620 Oct 22 07:06 runtime_log
[2024-10-22 07:06:21] -rw------- 1 boinc boinc    829440 Oct 22 07:06 result.tar.gz
[2024-10-22 07:06:21] -rw-rw-r-- 1 boinc boinc     11759 Oct 22 07:06 runtime_log.err
[2024-10-22 07:06:21] -rw------- 1 boinc boinc       641 Oct 22 07:06 0uRKDmmyMN6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmkGWLDm2YklXo.diag
[2024-10-22 07:06:21] -rw-rw-r-- 1 boinc boinc     20851 Oct 22 07:06 stderr.txt
[2024-10-22 07:06:21] HITS file was successfully produced:
[2024-10-22 07:06:21] -rw------- 1 boinc boinc 182116815 Oct 22 07:05 shared/HITS.pool.root.1
[2024-10-22 07:06:21]  *** Contents of shared directory: ***
[2024-10-22 07:06:21] total 397708
[2024-10-22 07:06:21] -rw-r--r-- 2 boinc boinc     17539 Oct 22 05:52 start_atlas.sh
[2024-10-22 07:06:21] -rw-r--r-- 2 boinc boinc    499664 Oct 22 05:52 input.tar.gz
[2024-10-22 07:06:21] -rw-r--r-- 2 boinc boinc 223771966 Oct 22 05:52 ATLAS.root_0
[2024-10-22 07:06:21] -rw------- 1 boinc boinc 182116815 Oct 22 07:05 HITS.pool.root.1
[2024-10-22 07:06:21] -rw------- 1 boinc boinc    829440 Oct 22 07:06 result.tar.gz
07:06:23 (1291000): run_atlas exited; CPU time 45799.394772
07:06:23 (1291000): called boinc_finish(0)

</stderr_txt>
]]>

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