Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
04:46:40 (1231121): wrapper (7.7.26015): starting
04:46:40 (1231121): wrapper: running run_atlas (--nthreads 12)
[2024-10-22 04:46:40] Arguments: --nthreads 12
[2024-10-22 04:46:40] Threads: 12
[2024-10-22 04:46:40] Checking for CVMFS
[2024-10-22 04:46:40] Probing /cvmfs/atlas.cern.ch... OK
[2024-10-22 04:46:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-10-22 04:46:40] Running cvmfs_config stat atlas.cern.ch
[2024-10-22 04:46:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-10-22 04:46:40] 2.11.3.0 559175 18709 173160 138605 3 184 3348917 4096000 5555 130560 0 318330476 99.999 4353825 204 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.0.181:3128 1
[2024-10-22 04:46:40] CVMFS is ok
[2024-10-22 04:46:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-10-22 04:46:40] Checking for apptainer binary...
[2024-10-22 04:46:40] apptainer is not installed, using version from CVMFS
[2024-10-22 04:46:40] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-10-22 04:46:41] epyc7v12
[2024-10-22 04:46:41] apptainer works
[2024-10-22 04:46:41] Set ATHENA_PROC_NUMBER=12
[2024-10-22 04:46:41] Set ATHENA_CORE_NUMBER=12
[2024-10-22 04:46:41] Starting ATLAS job with PandaID=6374752274
[2024-10-22 04:46:41] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-10-22 05:38:07]  *** The last 200 lines of the pilot log: ***
[2024-10-22 05:38:07]  filetype=log
[2024-10-22 05:38:07]  guid=d1abd49b-e060-43d3-a393-ab9bd213d4bf
[2024-10-22 05:38:07]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-10-22 05:38:07]  is_altstaged=None
[2024-10-22 05:38:07]  is_tar=False
[2024-10-22 05:38:07]  lfn=log.41079347._000896.job.log.tgz.1
[2024-10-22 05:38:07]  mtime=0
[2024-10-22 05:38:07]  protocol_id=None
[2024-10-22 05:38:07]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-10-22 05:38:07]  replicas=None
[2024-10-22 05:38:07]  scope=mc23_13p6TeV
[2024-10-22 05:38:07]  status=None
[2024-10-22 05:38:07]  status_code=0
[2024-10-22 05:38:07]  storage_token=
[2024-10-22 05:38:07]  surl=/opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-6374752274/log.41079347._000896.job.log.tgz.1
[2024-10-22 05:38:07]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/14/c5/log.41079347._000896.job.log.tgz.1
[2024-10-22 05:38:07]  workdir=None
[2024-10-22 05:38:07] ]
[2024-10-22 05:38:07] 2024-10-22 05:37:40,018 | INFO     | transferring file log.41079347._000896.job.log.tgz.1 from /opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-6374752274/log.41079347._000896.job.log.tgz.1 t
[2024-10-22 05:38:07] 2024-10-22 05:37:40,019 | INFO     | executing command: /usr/bin/env mv /opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-6374752274/log.41079347._000896.job.log.tgz.1 /opt/boinc/instance_home
[2024-10-22 05:38:07] 2024-10-22 05:37:40,049 | INFO     | adding to output.list: log.41079347._000896.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/14/c5/log.41079347._000896.job.log.tg
[2024-10-22 05:38:07] 2024-10-22 05:37:40,050 | INFO     | alt stage-out settings: ['pl', 'pw', 'w', 'default'], is_unified=False, altstageout=False, remain_files=0, has_altstorage=True
[2024-10-22 05:38:07] 2024-10-22 05:37:40,050 | INFO     | summary of transferred files:
[2024-10-22 05:38:07] 2024-10-22 05:37:40,050 | INFO     |  -- lfn=log.41079347._000896.job.log.tgz.1, status_code=0, status=transferred
[2024-10-22 05:38:07] 2024-10-22 05:37:40,050 | INFO     | stage-out finished correctly
[2024-10-22 05:38:07] 2024-10-22 05:37:40,649 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-10-22 05:38:07] 2024-10-22 05:37:41,117 | INFO     | job 6374752274 has state=finished
[2024-10-22 05:38:07] 2024-10-22 05:37:41,117 | INFO     | preparing for final server update for job 6374752274 in state='finished'
[2024-10-22 05:38:07] 2024-10-22 05:37:41,118 | INFO     | this job has now completed (state=finished)
[2024-10-22 05:38:07] 2024-10-22 05:37:41,118 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-10-22 05:38:07] 2024-10-22 05:37:41,118 | INFO     | log transfer has been attempted: DONE
[2024-10-22 05:38:07] 2024-10-22 05:37:41,118 | INFO     | job 6374752274 has finished - writing final server update
[2024-10-22 05:38:07] 2024-10-22 05:37:41,118 | INFO     | total number of processed events: 400 (read)
[2024-10-22 05:38:07] 2024-10-22 05:37:41,150 | INFO     | executing command: lscpu
[2024-10-22 05:38:07] 2024-10-22 05:37:41,244 | INFO     | found 64 cores (64 cores per socket, 1 sockets)
[2024-10-22 05:38:07] 2024-10-22 05:37:41,281 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-10-22 05:38:07] 2024-10-22 05:37:47,988 | INFO     | CPU arch script returned: x86-64-v3
[2024-10-22 05:38:07] 2024-10-22 05:37:47,989 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-6374752274/memory_monitor_summary.json (trf name=prmon)
[2024-10-22 05:38:07] 2024-10-22 05:37:47,998 | INFO     | extracted standard info from prmon json
[2024-10-22 05:38:07] 2024-10-22 05:37:47,999 | INFO     | extracted standard memory fields from prmon json
[2024-10-22 05:38:07] 2024-10-22 05:37:47,999 | WARNING  | GPU info not found in prmon json: 'gpu'
[2024-10-22 05:38:07] 2024-10-22 05:37:48,000 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-10-22 05:38:07] 2024-10-22 05:37:48,000 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-10-22 05:38:07] 2024-10-22 05:37:48,002 | INFO     | fitting pss+swap vs Time
[2024-10-22 05:38:07] 2024-10-22 05:37:48,002 | INFO     | model: linear, x: [1729572746.0, 1729572807.0, 1729572868.0, 1729572929.0, 1729572990.0, 1729573051.0, 1729573112.0, 1729573173.0, 1729573234.0, 1729573295.0, 1729
[2024-10-22 05:38:07] 2024-10-22 05:37:48,002 | INFO     | sum of square deviations: 24640462.0
[2024-10-22 05:38:07] 2024-10-22 05:37:48,002 | INFO     | sum of deviations: 2673095030.0000005
[2024-10-22 05:38:07] 2024-10-22 05:37:48,002 | INFO     | mean x: 1729574027.0
[2024-10-22 05:38:07] 2024-10-22 05:37:48,002 | INFO     | mean y: 2670121.11627907
[2024-10-22 05:38:07] 2024-10-22 05:37:48,003 | INFO     | -- intersect: -187628378987.89746
[2024-10-22 05:38:07] 2024-10-22 05:37:48,003 | INFO     | intersect: -187628378987.89746
[2024-10-22 05:38:07] 2024-10-22 05:37:48,003 | INFO     | chi2: 0.22090084203532315
[2024-10-22 05:38:07] 2024-10-22 05:37:48,003 | INFO     | -- intersect: -187628378987.89746
[2024-10-22 05:38:07] 2024-10-22 05:37:48,003 | INFO     | current memory leak: 108.48 B/s (using 43 data points, chi2=0.22)
[2024-10-22 05:38:07] 2024-10-22 05:37:48,003 | INFO     | ..............................
[2024-10-22 05:38:07] 2024-10-22 05:37:48,003 | INFO     | . Timing measurements:
[2024-10-22 05:38:07] 2024-10-22 05:37:48,004 | INFO     | . get job = 0 s
[2024-10-22 05:38:07] 2024-10-22 05:37:48,004 | INFO     | . initial setup = 1 s
[2024-10-22 05:38:07] 2024-10-22 05:37:48,004 | INFO     | . payload setup = 6 s
[2024-10-22 05:38:07] 2024-10-22 05:37:48,004 | INFO     | . stage-in = 0 s
[2024-10-22 05:38:07] 2024-10-22 05:37:48,004 | INFO     | . payload execution = 3020 s
[2024-10-22 05:38:07] 2024-10-22 05:37:48,004 | INFO     | . stage-out = 0 s
[2024-10-22 05:38:07] 2024-10-22 05:37:48,004 | INFO     | . log creation = 0 s
[2024-10-22 05:38:07] 2024-10-22 05:37:48,004 | INFO     | ..............................
[2024-10-22 05:38:07] 2024-10-22 05:37:48,122 | INFO     | 
[2024-10-22 05:38:07] 2024-10-22 05:37:48,122 | INFO     | job summary report
[2024-10-22 05:38:07] 2024-10-22 05:37:48,123 | INFO     | --------------------------------------------------
[2024-10-22 05:38:07] 2024-10-22 05:37:48,123 | INFO     | PanDA job id: 6374752274
[2024-10-22 05:38:07] 2024-10-22 05:37:48,123 | INFO     | task id: 41079347
[2024-10-22 05:38:07] 2024-10-22 05:37:48,123 | INFO     | errors: (none)
[2024-10-22 05:38:07] 2024-10-22 05:37:48,123 | INFO     | status: LOG_TRANSFER = DONE 
[2024-10-22 05:38:07] 2024-10-22 05:37:48,123 | INFO     | pilot state: finished 
[2024-10-22 05:38:07] 2024-10-22 05:37:48,123 | INFO     | transexitcode: 0
[2024-10-22 05:38:07] 2024-10-22 05:37:48,124 | INFO     | exeerrorcode: 0
[2024-10-22 05:38:07] 2024-10-22 05:37:48,124 | INFO     | exeerrordiag: 
[2024-10-22 05:38:07] 2024-10-22 05:37:48,124 | INFO     | exitcode: 0
[2024-10-22 05:38:07] 2024-10-22 05:37:48,124 | INFO     | exitmsg: OK
[2024-10-22 05:38:07] 2024-10-22 05:37:48,124 | INFO     | cpuconsumptiontime: 29040 s
[2024-10-22 05:38:07] 2024-10-22 05:37:48,124 | INFO     | nevents: 400
[2024-10-22 05:38:07] 2024-10-22 05:37:48,124 | INFO     | neventsw: 0
[2024-10-22 05:38:07] 2024-10-22 05:37:48,124 | INFO     | pid: 1245021
[2024-10-22 05:38:07] 2024-10-22 05:37:48,124 | INFO     | pgrp: 1245021
[2024-10-22 05:38:07] 2024-10-22 05:37:48,124 | INFO     | corecount: 12
[2024-10-22 05:38:07] 2024-10-22 05:37:48,124 | INFO     | event service: False
[2024-10-22 05:38:07] 2024-10-22 05:37:48,124 | INFO     | sizes: {0: 2424112, 5: 2424318, 11: 2424374, 3031: 2449729, 3032: 2458855, 3040: 2458969}
[2024-10-22 05:38:07] 2024-10-22 05:37:48,124 | INFO     | --------------------------------------------------
[2024-10-22 05:38:07] 2024-10-22 05:37:48,124 | INFO     | 
[2024-10-22 05:38:07] 2024-10-22 05:37:48,125 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/2
[2024-10-22 05:38:07] 2024-10-22 05:37:48,170 | INFO     | queue jobs had 0 job(s) [purged]
[2024-10-22 05:38:07] 2024-10-22 05:37:48,170 | INFO     | queue payloads had 0 job(s) [purged]
[2024-10-22 05:38:07] 2024-10-22 05:37:48,170 | INFO     | queue data_in had 0 job(s) [purged]
[2024-10-22 05:38:07] 2024-10-22 05:37:48,170 | INFO     | queue data_out had 0 job(s) [purged]
[2024-10-22 05:38:07] 2024-10-22 05:37:48,170 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-10-22 05:38:07] 2024-10-22 05:37:48,170 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-10-22 05:38:07] 2024-10-22 05:37:48,170 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-10-22 05:38:07] 2024-10-22 05:37:48,170 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-10-22 05:38:07] 2024-10-22 05:37:48,171 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-10-22 05:38:07] 2024-10-22 05:37:48,171 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-10-22 05:38:07] 2024-10-22 05:37:48,171 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-10-22 05:38:07] 2024-10-22 05:37:48,171 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-10-22 05:38:07] 2024-10-22 05:37:48,171 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-10-22 05:38:07] 2024-10-22 05:37:48,171 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-10-22 05:38:07] 2024-10-22 05:37:48,171 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-10-22 05:38:07] 2024-10-22 05:37:48,171 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-10-22 05:38:07] 2024-10-22 05:37:48,171 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-10-22 05:38:07] 2024-10-22 05:37:48,171 | INFO     | queue completed_jobids has 1 job(s)
[2024-10-22 05:38:07] 2024-10-22 05:37:48,171 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-10-22 05:38:07] 2024-10-22 05:37:48,171 | INFO     | queue messages had 0 job(s) [purged]
[2024-10-22 05:38:07] 2024-10-22 05:37:48,172 | INFO     | job 6374752274 has completed (purged errors)
[2024-10-22 05:38:07] 2024-10-22 05:37:48,172 | INFO     | overall cleanup function is called
[2024-10-22 05:38:07] 2024-10-22 05:37:48,173 | WARNING  | process 1245021 is no longer using CPU - aborting
[2024-10-22 05:38:07] 2024-10-22 05:37:48,173 | INFO     | aborting job monitoring since job object (job id=6374752274) has expired
[2024-10-22 05:38:07] 2024-10-22 05:37:49,181 | INFO     | --- collectZombieJob: --- 10, [1245021]
[2024-10-22 05:38:07] 2024-10-22 05:37:49,181 | INFO     | zombie collector waiting for pid 1245021
[2024-10-22 05:38:07] 2024-10-22 05:37:49,181 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-10-22 05:38:07] 2024-10-22 05:37:49,181 | INFO     | collected zombie processes
[2024-10-22 05:38:07] 2024-10-22 05:37:49,181 | INFO     | will attempt to kill all subprocesses of pid=1245021
[2024-10-22 05:38:07] 2024-10-22 05:37:49,357 | INFO     | process IDs to be killed: [1245021] (in reverse order)
[2024-10-22 05:38:07] 2024-10-22 05:37:49,551 | WARNING  | found no corresponding commands to process id(s)
[2024-10-22 05:38:07] 2024-10-22 05:37:49,552 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-10-22 05:38:07] 2024-10-22 05:37:49,565 | INFO     | did not find any defunct processes belonging to 1245021
[2024-10-22 05:38:07] 2024-10-22 05:37:49,577 | INFO     | did not find any defunct processes belonging to 1245021
[2024-10-22 05:38:07] 2024-10-22 05:37:49,577 | INFO     | ready for new job
[2024-10-22 05:38:07] 2024-10-22 05:37:49,577 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-10-22 05:38:07] 2024-10-22 05:37:49,578 | INFO     | **************************************
[2024-10-22 05:38:07] 2024-10-22 05:37:49,578 | INFO     | ***  PanDA Pilot version 3.9.1.13  ***
[2024-10-22 05:38:07] 2024-10-22 05:37:49,579 | INFO     | **************************************
[2024-10-22 05:38:07] 2024-10-22 05:37:49,579 | INFO     | 
[2024-10-22 05:38:07] 2024-10-22 05:37:49,605 | INFO     | architecture information:
[2024-10-22 05:38:07] 2024-10-22 05:37:49,609 | INFO     | executing command: cat /etc/os-release
[2024-10-22 05:38:07] 2024-10-22 05:37:49,634 | INFO     | cat /etc/os-release:
[2024-10-22 05:38:07] NAME="CentOS Linux"
[2024-10-22 05:38:07] VERSION="7 (Core)"
[2024-10-22 05:38:07] ID="centos"
[2024-10-22 05:38:07] ID_LIKE="rhel fedora"
[2024-10-22 05:38:07] VERSION_ID="7"
[2024-10-22 05:38:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-10-22 05:38:07] ANSI_COLOR="0;31"
[2024-10-22 05:38:07] CPE_NAME="cpe:/o:centos:centos:7"
[2024-10-22 05:38:07] HOME_URL="https://www.centos.org/"
[2024-10-22 05:38:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-10-22 05:38:07] 
[2024-10-22 05:38:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-10-22 05:38:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-10-22 05:38:07] REDHAT_SUPPORT_PRODUCT="centos"
[2024-10-22 05:38:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-10-22 05:38:07] 
[2024-10-22 05:38:07] 2024-10-22 05:37:49,635 | INFO     | **************************************
[2024-10-22 05:38:07] 2024-10-22 05:37:50,141 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/2
[2024-10-22 05:38:07] 2024-10-22 05:37:50,183 | INFO     | sufficient remaining disk space (333180829696 B)
[2024-10-22 05:38:07] 2024-10-22 05:37:50,183 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-10-22 05:38:07] 2024-10-22 05:37:50,183 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-10-22 05:38:07] 2024-10-22 05:37:50,184 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-10-22 05:38:07] 2024-10-22 05:37:50,184 | INFO     | found 0 job(s) in 20 queues
[2024-10-22 05:38:07] 2024-10-22 05:37:50,184 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-10-22 05:38:07] 2024-10-22 05:37:50,184 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-10-22 05:38:07] 2024-10-22 05:37:50,665 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-10-22 05:38:07] 2024-10-22 05:37:50,676 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-10-22 05:38:07] 2024-10-22 05:37:50,676 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-10-22 05:38:07] 2024-10-22 05:37:50,676 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-10-22 05:38:07] 2024-10-22 05:37:50,676 | INFO     | will abort loop
[2024-10-22 05:38:07] 2024-10-22 05:37:50,839 | INFO     | all job control threads have been joined
[2024-10-22 05:38:07] 2024-10-22 05:37:51,185 | INFO     | [job] retrieve thread has finished
[2024-10-22 05:38:07] 2024-10-22 05:37:51,241 | INFO     | all data control threads have been joined
[2024-10-22 05:38:07] 2024-10-22 05:37:51,253 | INFO     | all payload control threads have been joined
[2024-10-22 05:38:07] 2024-10-22 05:37:51,276 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-10-22 05:38:07] 2024-10-22 05:37:51,305 | INFO     | [job] create_data_payload thread has finished
[2024-10-22 05:38:07] 2024-10-22 05:37:51,401 | INFO     | [data] copytool_in thread has finished
[2024-10-22 05:38:07] 2024-10-22 05:37:51,473 | INFO     | [payload] validate_post thread has finished
[2024-10-22 05:38:07] 2024-10-22 05:37:51,681 | INFO     | [job] job monitor thread has finished
[2024-10-22 05:38:07] 2024-10-22 05:37:51,845 | INFO     | [job] control thread has finished
[2024-10-22 05:38:07] 2024-10-22 05:37:51,945 | INFO     | [payload] failed_post thread has finished
[2024-10-22 05:38:07] 2024-10-22 05:37:52,189 | INFO     | [payload] execute_payloads thread has finished
[2024-10-22 05:38:07] 2024-10-22 05:37:52,245 | INFO     | [data] control thread has finished
[2024-10-22 05:38:07] 2024-10-22 05:37:52,257 | INFO     | [payload] control thread has finished
[2024-10-22 05:38:07] 2024-10-22 05:37:52,305 | INFO     | [payload] validate_pre thread has finished
[2024-10-22 05:38:07] 2024-10-22 05:37:52,365 | INFO     | [job] validate thread has finished
[2024-10-22 05:38:07] 2024-10-22 05:37:52,669 | INFO     | [data] copytool_out thread has finished
[2024-10-22 05:38:07] 2024-10-22 05:37:53,141 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-10-22 05:38:07] 2024-10-22 05:37:54,149 | INFO     | [job] queue monitor thread has finished
[2024-10-22 05:38:07] 2024-10-22 05:37:55,281 | INFO     | [data] queue_monitor thread has finished
[2024-10-22 05:38:07] 2024-10-22 05:38:00,449 | INFO     | job.realtimelogging is not enabled
[2024-10-22 05:38:07] 2024-10-22 05:38:01,453 | INFO     | [payload] run_realtimelog thread has finished
[2024-10-22 05:38:07] 2024-10-22 05:38:01,989 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139819787544384)>', '<ExcThread(monitor, started 139819346806528)>']
[2024-10-22 05:38:07] 2024-10-22 05:38:02,241 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-10-22 05:38:07] 2024-10-22 05:38:02,241 | INFO     | [monitor] control thread has ended
[2024-10-22 05:38:07] 2024-10-22 05:38:07,013 | INFO     | all workflow threads have been joined
[2024-10-22 05:38:07] 2024-10-22 05:38:07,013 | INFO     | end of generic workflow (traces error code: 0)
[2024-10-22 05:38:07] 2024-10-22 05:38:07,013 | INFO     | traces error code: 0
[2024-10-22 05:38:07] 2024-10-22 05:38:07,014 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-10-22 05:38:07] 2024-10-22 05:38:07,116 [wrapper] ==== pilot stdout END ====
[2024-10-22 05:38:07] 2024-10-22 05:38:07,119 [wrapper] ==== wrapper stdout RESUME ====
[2024-10-22 05:38:07] 2024-10-22 05:38:07,124 [wrapper] pilotpid: 1237554
[2024-10-22 05:38:07] 2024-10-22 05:38:07,128 [wrapper] Pilot exit status: 0
[2024-10-22 05:38:07] 2024-10-22 05:38:07,143 [wrapper] pandaids: 6374752274
[2024-10-22 05:38:07] 2024-10-22 05:38:07,243 [wrapper] cleanup supervisor_pilot 1277179 1237555
[2024-10-22 05:38:07] 2024-10-22 05:38:07,248 [wrapper] Test setup, not cleaning
[2024-10-22 05:38:07] 2024-10-22 05:38:07,255 [wrapper] ==== wrapper stdout END ====
[2024-10-22 05:38:07] 2024-10-22 05:38:07,258 [wrapper] ==== wrapper stderr END ====
[2024-10-22 05:38:07] 2024-10-22 05:38:07,270 [wrapper] apfmon messages muted
[2024-10-22 05:38:07]  *** Error codes and diagnostics ***
[2024-10-22 05:38:07]     "exeErrorCode": 0,
[2024-10-22 05:38:07]     "exeErrorDiag": "",
[2024-10-22 05:38:07]     "pilotErrorCode": 0,
[2024-10-22 05:38:07]     "pilotErrorDiag": "",
[2024-10-22 05:38:07]  *** Listing of results directory ***
[2024-10-22 05:38:07] total 596356
[2024-10-22 05:38:07] -rw-r--r-- 1 boinc boinc    486088 Oct 22 04:43 pilot3.tar.gz
[2024-10-22 05:38:07] -rwx------ 1 boinc boinc     33946 Oct 22 04:45 runpilot2-wrapper.sh
[2024-10-22 05:38:07] -rw-r--r-- 1 boinc boinc      5654 Oct 22 04:45 queuedata.json
[2024-10-22 05:38:07] -rw-rw-r-- 1 boinc boinc       100 Oct 22 04:46 wrapper_26015_x86_64-pc-linux-gnu
[2024-10-22 05:38:07] -rwxr-xr-x 1 boinc boinc      7986 Oct 22 04:46 run_atlas
[2024-10-22 05:38:07] -rw-rw-r-- 1 boinc boinc       105 Oct 22 04:46 job.xml
[2024-10-22 05:38:07] -rw-r--r-- 2 boinc boinc     17539 Oct 22 04:46 start_atlas.sh
[2024-10-22 05:38:07] drwxrwx--x 2 boinc boinc      4096 Oct 22 04:46 shared
[2024-10-22 05:38:07] -rw-r--r-- 2 boinc boinc    499644 Oct 22 04:46 input.tar.gz
[2024-10-22 05:38:07] -rw-rw-r-- 1 boinc boinc      6957 Oct 22 04:46 init_data.xml
[2024-10-22 05:38:07] -rw-r--r-- 2 boinc boinc 447349542 Oct 22 04:46 EVNT.41079345._000020.pool.root.1
[2024-10-22 05:38:07] -rw-rw-r-- 1 boinc boinc         0 Oct 22 04:46 boinc_lockfile
[2024-10-22 05:38:07] -rw-rw-r-- 1 boinc boinc      2578 Oct 22 04:46 pandaJob.out
[2024-10-22 05:38:07] -rw------- 1 boinc boinc       460 Oct 22 04:46 setup.sh.local
[2024-10-22 05:38:07] -rw------- 1 boinc boinc   1023975 Oct 22 04:46 agis_schedconf.cvmfs.json
[2024-10-22 05:38:07] -rw------- 1 boinc boinc   1608777 Oct 22 04:46 agis_ddmendpoints.agis.ALL.json
[2024-10-22 05:38:07] drwx------ 4 boinc boinc      4096 Oct 22 04:46 pilot3
[2024-10-22 05:38:07] -rw------- 1 boinc boinc        95 Oct 22 05:36 pilot_heartbeat.json
[2024-10-22 05:38:07] -rw------- 1 boinc boinc 158126486 Oct 22 05:37 HITS.41079347._000896.pool.root.1
[2024-10-22 05:38:07] -rw-rw-r-- 1 boinc boinc       531 Oct 22 05:37 boinc_task_state.xml
[2024-10-22 05:38:07] -rw------- 1 boinc boinc      1013 Oct 22 05:37 memory_monitor_summary.json
[2024-10-22 05:38:07] -rw------- 1 boinc boinc    338911 Oct 22 05:37 log.41079347._000896.job.log.tgz.1
[2024-10-22 05:38:07] -rw------- 1 boinc boinc      7634 Oct 22 05:37 heartbeat.json
[2024-10-22 05:38:07] -rw-rw-r-- 1 boinc boinc        27 Oct 22 05:38 wrapper_checkpoint.txt
[2024-10-22 05:38:07] -rw-rw-r-- 1 boinc boinc      8192 Oct 22 05:38 boinc_mmap_file
[2024-10-22 05:38:07] -rw------- 1 boinc boinc      4620 Oct 22 05:38 pilotlog.txt
[2024-10-22 05:38:07] -rw------- 1 boinc boinc    326649 Oct 22 05:38 log.41079347._000896.job.log.1
[2024-10-22 05:38:07] -rw------- 1 boinc boinc       357 Oct 22 05:38 output.list
[2024-10-22 05:38:07] -rw-rw-r-- 1 boinc boinc       620 Oct 22 05:38 runtime_log
[2024-10-22 05:38:07] -rw------- 1 boinc boinc    686080 Oct 22 05:38 result.tar.gz
[2024-10-22 05:38:07] -rw------- 1 boinc boinc       640 Oct 22 05:38 znWLDmzwLN6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmnFWLDmazu1Xm.diag
[2024-10-22 05:38:07] -rw-rw-r-- 1 boinc boinc     11759 Oct 22 05:38 runtime_log.err
[2024-10-22 05:38:07] -rw-rw-r-- 1 boinc boinc     21127 Oct 22 05:38 stderr.txt
[2024-10-22 05:38:07] HITS file was successfully produced:
[2024-10-22 05:38:07] -rw------- 1 boinc boinc 158126486 Oct 22 05:37 shared/HITS.pool.root.1
[2024-10-22 05:38:07]  *** Contents of shared directory: ***
[2024-10-22 05:38:07] total 592480
[2024-10-22 05:38:07] -rw-r--r-- 2 boinc boinc     17539 Oct 22 04:46 start_atlas.sh
[2024-10-22 05:38:07] -rw-r--r-- 2 boinc boinc    499644 Oct 22 04:46 input.tar.gz
[2024-10-22 05:38:07] -rw-r--r-- 2 boinc boinc 447349542 Oct 22 04:46 ATLAS.root_0
[2024-10-22 05:38:07] -rw------- 1 boinc boinc 158126486 Oct 22 05:37 HITS.pool.root.1
[2024-10-22 05:38:07] -rw------- 1 boinc boinc    686080 Oct 22 05:38 result.tar.gz
05:38:09 (1231121): run_atlas exited; CPU time 28978.599948
05:38:09 (1231121): called boinc_finish(0)

</stderr_txt>
]]>

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