Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
03:31:54 (913223): wrapper (7.7.26015): starting
03:31:54 (913223): wrapper: running run_atlas (--nthreads 12)
[2024-10-22 03:31:54] Arguments: --nthreads 12
[2024-10-22 03:31:54] Threads: 12
[2024-10-22 03:31:54] Checking for CVMFS
[2024-10-22 03:31:55] Probing /cvmfs/atlas.cern.ch... OK
[2024-10-22 03:31:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-10-22 03:31:55] Running cvmfs_config stat atlas.cern.ch
[2024-10-22 03:31:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-10-22 03:31:57] 2.11.3.0 559175 18635 174160 138604 1 187 3338907 4096000 15597 130560 0 317277779 99.999 4352576 204 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.0.181:3128 1
[2024-10-22 03:31:57] CVMFS is ok
[2024-10-22 03:31:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-10-22 03:31:58] Checking for apptainer binary...
[2024-10-22 03:31:58] apptainer is not installed, using version from CVMFS
[2024-10-22 03:31:58] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-10-22 03:31:59] epyc7v12
[2024-10-22 03:31:59] apptainer works
[2024-10-22 03:31:59] Set ATHENA_PROC_NUMBER=12
[2024-10-22 03:31:59] Set ATHENA_CORE_NUMBER=12
[2024-10-22 03:31:59] Starting ATLAS job with PandaID=6374632848
[2024-10-22 03:31:59] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-10-22 04:43:11]  *** The last 200 lines of the pilot log: ***
[2024-10-22 04:43:11]  direct_access_wan=False
[2024-10-22 04:43:11]  domain=
[2024-10-22 04:43:11]  filesize=342019
[2024-10-22 04:43:11]  filetype=log
[2024-10-22 04:43:11]  guid=31f64618-8caf-463c-b9f2-e6e93be976dc
[2024-10-22 04:43:11]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-10-22 04:43:11]  is_altstaged=None
[2024-10-22 04:43:11]  is_tar=False
[2024-10-22 04:43:11]  lfn=log.41079388._000800.job.log.tgz.1
[2024-10-22 04:43:11]  mtime=0
[2024-10-22 04:43:11]  protocol_id=None
[2024-10-22 04:43:11]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-10-22 04:43:11]  replicas=None
[2024-10-22 04:43:11]  scope=mc23_13p6TeV
[2024-10-22 04:43:11]  status=None
[2024-10-22 04:43:11]  status_code=0
[2024-10-22 04:43:11]  storage_token=
[2024-10-22 04:43:11]  surl=/opt/boinc/instance_homes/boinc_31417/slots/5/PanDA_Pilot-6374632848/log.41079388._000800.job.log.tgz.1
[2024-10-22 04:43:11]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/06/67/log.41079388._000800.job.log.tgz.1
[2024-10-22 04:43:11]  workdir=None
[2024-10-22 04:43:11] ]
[2024-10-22 04:43:11] 2024-10-22 04:42:47,514 | INFO     | transferring file log.41079388._000800.job.log.tgz.1 from /opt/boinc/instance_homes/boinc_31417/slots/5/PanDA_Pilot-6374632848/log.41079388._000800.job.log.tgz.1 t
[2024-10-22 04:43:11] 2024-10-22 04:42:47,515 | INFO     | executing command: /usr/bin/env mv /opt/boinc/instance_homes/boinc_31417/slots/5/PanDA_Pilot-6374632848/log.41079388._000800.job.log.tgz.1 /opt/boinc/instance_home
[2024-10-22 04:43:11] 2024-10-22 04:42:47,540 | INFO     | adding to output.list: log.41079388._000800.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/06/67/log.41079388._000800.job.log.tg
[2024-10-22 04:43:11] 2024-10-22 04:42:47,541 | INFO     | alt stage-out settings: ['pl', 'pw', 'w', 'default'], is_unified=False, altstageout=False, remain_files=0, has_altstorage=True
[2024-10-22 04:43:11] 2024-10-22 04:42:47,542 | INFO     | summary of transferred files:
[2024-10-22 04:43:11] 2024-10-22 04:42:47,542 | INFO     |  -- lfn=log.41079388._000800.job.log.tgz.1, status_code=0, status=transferred
[2024-10-22 04:43:11] 2024-10-22 04:42:47,542 | INFO     | stage-out finished correctly
[2024-10-22 04:43:11] 2024-10-22 04:42:50,312 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-10-22 04:43:11] 2024-10-22 04:42:50,412 | INFO     | job 6374632848 has state=finished
[2024-10-22 04:43:11] 2024-10-22 04:42:50,413 | INFO     | preparing for final server update for job 6374632848 in state='finished'
[2024-10-22 04:43:11] 2024-10-22 04:42:50,413 | INFO     | this job has now completed (state=finished)
[2024-10-22 04:43:11] 2024-10-22 04:42:50,413 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-10-22 04:43:11] 2024-10-22 04:42:50,414 | INFO     | log transfer has been attempted: DONE
[2024-10-22 04:43:11] 2024-10-22 04:42:50,414 | INFO     | job 6374632848 has finished - writing final server update
[2024-10-22 04:43:11] 2024-10-22 04:42:50,414 | INFO     | total number of processed events: 400 (read)
[2024-10-22 04:43:11] 2024-10-22 04:42:50,442 | INFO     | executing command: lscpu
[2024-10-22 04:43:11] 2024-10-22 04:42:50,562 | INFO     | found 64 cores (64 cores per socket, 1 sockets)
[2024-10-22 04:43:11] 2024-10-22 04:42:50,619 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-10-22 04:43:11] 2024-10-22 04:42:55,732 | INFO     | CPU arch script returned: x86-64-v3
[2024-10-22 04:43:11] 2024-10-22 04:42:55,733 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/5/PanDA_Pilot-6374632848/memory_monitor_summary.json (trf name=prmon)
[2024-10-22 04:43:11] 2024-10-22 04:42:55,741 | INFO     | extracted standard info from prmon json
[2024-10-22 04:43:11] 2024-10-22 04:42:55,742 | INFO     | extracted standard memory fields from prmon json
[2024-10-22 04:43:11] 2024-10-22 04:42:55,742 | WARNING  | GPU info not found in prmon json: 'gpu'
[2024-10-22 04:43:11] 2024-10-22 04:42:55,743 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-10-22 04:43:11] 2024-10-22 04:42:55,743 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-10-22 04:43:11] 2024-10-22 04:42:55,745 | INFO     | fitting pss+swap vs Time
[2024-10-22 04:43:11] 2024-10-22 04:42:55,745 | INFO     | model: linear, x: [1729568557.0, 1729568618.0, 1729568679.0, 1729568740.0, 1729568801.0, 1729568862.0, 1729568923.0, 1729568984.0, 1729569045.0, 1729569106.0, 1729
[2024-10-22 04:43:11] 2024-10-22 04:42:55,746 | INFO     | sum of square deviations: 60482994.5
[2024-10-22 04:43:11] 2024-10-22 04:42:55,746 | INFO     | sum of deviations: 12349209568.5
[2024-10-22 04:43:11] 2024-10-22 04:42:55,746 | INFO     | mean x: 1729570295.5
[2024-10-22 04:43:11] 2024-10-22 04:42:55,746 | INFO     | mean y: 2564901.706896552
[2024-10-22 04:43:11] 2024-10-22 04:42:55,746 | INFO     | -- intersect: -353135142963.96387
[2024-10-22 04:43:11] 2024-10-22 04:42:55,746 | INFO     | intersect: -353135142963.96387
[2024-10-22 04:43:11] 2024-10-22 04:42:55,747 | INFO     | chi2: 1.2955600470958117
[2024-10-22 04:43:11] 2024-10-22 04:42:55,747 | INFO     | -- intersect: -353135142963.96387
[2024-10-22 04:43:11] 2024-10-22 04:42:55,747 | INFO     | current memory leak: 204.18 B/s (using 58 data points, chi2=1.30)
[2024-10-22 04:43:11] 2024-10-22 04:42:55,747 | INFO     | ..............................
[2024-10-22 04:43:11] 2024-10-22 04:42:55,747 | INFO     | . Timing measurements:
[2024-10-22 04:43:11] 2024-10-22 04:42:55,748 | INFO     | . get job = 0 s
[2024-10-22 04:43:11] 2024-10-22 04:42:55,748 | INFO     | . initial setup = 4 s
[2024-10-22 04:43:11] 2024-10-22 04:42:55,748 | INFO     | . payload setup = 66 s
[2024-10-22 04:43:11] 2024-10-22 04:42:55,748 | INFO     | . stage-in = 0 s
[2024-10-22 04:43:11] 2024-10-22 04:42:55,748 | INFO     | . payload execution = 3966 s
[2024-10-22 04:43:11] 2024-10-22 04:42:55,748 | INFO     | . stage-out = 0 s
[2024-10-22 04:43:11] 2024-10-22 04:42:55,748 | INFO     | . log creation = 0 s
[2024-10-22 04:43:11] 2024-10-22 04:42:55,748 | INFO     | ..............................
[2024-10-22 04:43:11] 2024-10-22 04:42:55,867 | INFO     | 
[2024-10-22 04:43:11] 2024-10-22 04:42:55,867 | INFO     | job summary report
[2024-10-22 04:43:11] 2024-10-22 04:42:55,867 | INFO     | --------------------------------------------------
[2024-10-22 04:43:11] 2024-10-22 04:42:55,867 | INFO     | PanDA job id: 6374632848
[2024-10-22 04:43:11] 2024-10-22 04:42:55,867 | INFO     | task id: 41079388
[2024-10-22 04:43:11] 2024-10-22 04:42:55,867 | INFO     | errors: (none)
[2024-10-22 04:43:11] 2024-10-22 04:42:55,868 | INFO     | status: LOG_TRANSFER = DONE 
[2024-10-22 04:43:11] 2024-10-22 04:42:55,868 | INFO     | pilot state: finished 
[2024-10-22 04:43:11] 2024-10-22 04:42:55,868 | INFO     | transexitcode: 0
[2024-10-22 04:43:11] 2024-10-22 04:42:55,868 | INFO     | exeerrorcode: 0
[2024-10-22 04:43:11] 2024-10-22 04:42:55,868 | INFO     | exeerrordiag: 
[2024-10-22 04:43:11] 2024-10-22 04:42:55,868 | INFO     | exitcode: 0
[2024-10-22 04:43:11] 2024-10-22 04:42:55,869 | INFO     | exitmsg: OK
[2024-10-22 04:43:11] 2024-10-22 04:42:55,869 | INFO     | cpuconsumptiontime: 30930 s
[2024-10-22 04:43:11] 2024-10-22 04:42:55,870 | INFO     | nevents: 400
[2024-10-22 04:43:11] 2024-10-22 04:42:55,870 | INFO     | neventsw: 0
[2024-10-22 04:43:11] 2024-10-22 04:42:55,870 | INFO     | pid: 951204
[2024-10-22 04:43:11] 2024-10-22 04:42:55,870 | INFO     | pgrp: 951204
[2024-10-22 04:43:11] 2024-10-22 04:42:55,870 | INFO     | corecount: 12
[2024-10-22 04:43:11] 2024-10-22 04:42:55,870 | INFO     | event service: False
[2024-10-22 04:43:11] 2024-10-22 04:42:55,870 | INFO     | sizes: {0: 2423948, 1: 2424032, 2: 2424203, 3: 2424231, 13: 2424259, 24: 2424315, 35: 2424471, 46: 2424499, 55: 2424733, 57: 2424761, 4036: 2450604, 4037: 2459674,
[2024-10-22 04:43:11] 2024-10-22 04:42:55,870 | INFO     | --------------------------------------------------
[2024-10-22 04:43:11] 2024-10-22 04:42:55,870 | INFO     | 
[2024-10-22 04:43:11] 2024-10-22 04:42:55,870 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/5
[2024-10-22 04:43:11] 2024-10-22 04:42:55,914 | WARNING  | process 951204 is no longer using CPU - aborting
[2024-10-22 04:43:11] 2024-10-22 04:42:55,915 | INFO     | queue jobs had 0 job(s) [purged]
[2024-10-22 04:43:11] 2024-10-22 04:42:55,915 | INFO     | aborting job monitoring since job object (job id=6374632848) has expired
[2024-10-22 04:43:11] 2024-10-22 04:42:55,915 | INFO     | queue payloads had 0 job(s) [purged]
[2024-10-22 04:43:11] 2024-10-22 04:42:55,916 | INFO     | queue data_in had 0 job(s) [purged]
[2024-10-22 04:43:11] 2024-10-22 04:42:55,916 | INFO     | queue data_out had 0 job(s) [purged]
[2024-10-22 04:43:11] 2024-10-22 04:42:55,916 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-10-22 04:43:11] 2024-10-22 04:42:55,916 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-10-22 04:43:11] 2024-10-22 04:42:55,916 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-10-22 04:43:11] 2024-10-22 04:42:55,916 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-10-22 04:43:11] 2024-10-22 04:42:55,916 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-10-22 04:43:11] 2024-10-22 04:42:55,917 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-10-22 04:43:11] 2024-10-22 04:42:55,917 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-10-22 04:43:11] 2024-10-22 04:42:55,917 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-10-22 04:43:11] 2024-10-22 04:42:55,917 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-10-22 04:43:11] 2024-10-22 04:42:55,917 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-10-22 04:43:11] 2024-10-22 04:42:55,917 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-10-22 04:43:11] 2024-10-22 04:42:55,917 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-10-22 04:43:11] 2024-10-22 04:42:55,917 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-10-22 04:43:11] 2024-10-22 04:42:55,917 | INFO     | queue completed_jobids has 1 job(s)
[2024-10-22 04:43:11] 2024-10-22 04:42:55,917 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-10-22 04:43:11] 2024-10-22 04:42:55,918 | INFO     | queue messages had 0 job(s) [purged]
[2024-10-22 04:43:11] 2024-10-22 04:42:55,918 | INFO     | job 6374632848 has completed (purged errors)
[2024-10-22 04:43:11] 2024-10-22 04:42:55,918 | INFO     | overall cleanup function is called
[2024-10-22 04:43:11] 2024-10-22 04:42:56,927 | INFO     | --- collectZombieJob: --- 10, [951204]
[2024-10-22 04:43:11] 2024-10-22 04:42:56,928 | INFO     | zombie collector waiting for pid 951204
[2024-10-22 04:43:11] 2024-10-22 04:42:56,928 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-10-22 04:43:11] 2024-10-22 04:42:56,928 | INFO     | collected zombie processes
[2024-10-22 04:43:11] 2024-10-22 04:42:56,928 | INFO     | will attempt to kill all subprocesses of pid=951204
[2024-10-22 04:43:11] 2024-10-22 04:42:57,108 | INFO     | process IDs to be killed: [951204] (in reverse order)
[2024-10-22 04:43:11] 2024-10-22 04:42:57,261 | WARNING  | found no corresponding commands to process id(s)
[2024-10-22 04:43:11] 2024-10-22 04:42:57,262 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-10-22 04:43:11] 2024-10-22 04:42:57,276 | INFO     | did not find any defunct processes belonging to 951204
[2024-10-22 04:43:11] 2024-10-22 04:42:57,289 | INFO     | did not find any defunct processes belonging to 951204
[2024-10-22 04:43:11] 2024-10-22 04:42:57,290 | INFO     | ready for new job
[2024-10-22 04:43:11] 2024-10-22 04:42:57,290 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-10-22 04:43:11] 2024-10-22 04:42:57,291 | INFO     | **************************************
[2024-10-22 04:43:11] 2024-10-22 04:42:57,292 | INFO     | ***  PanDA Pilot version 3.9.1.13  ***
[2024-10-22 04:43:11] 2024-10-22 04:42:57,292 | INFO     | **************************************
[2024-10-22 04:43:11] 2024-10-22 04:42:57,292 | INFO     | 
[2024-10-22 04:43:11] 2024-10-22 04:42:57,319 | INFO     | architecture information:
[2024-10-22 04:43:11] 2024-10-22 04:42:57,319 | INFO     | executing command: cat /etc/os-release
[2024-10-22 04:43:11] 2024-10-22 04:42:57,341 | INFO     | cat /etc/os-release:
[2024-10-22 04:43:11] NAME="CentOS Linux"
[2024-10-22 04:43:11] VERSION="7 (Core)"
[2024-10-22 04:43:11] ID="centos"
[2024-10-22 04:43:11] ID_LIKE="rhel fedora"
[2024-10-22 04:43:11] VERSION_ID="7"
[2024-10-22 04:43:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-10-22 04:43:11] ANSI_COLOR="0;31"
[2024-10-22 04:43:11] CPE_NAME="cpe:/o:centos:centos:7"
[2024-10-22 04:43:11] HOME_URL="https://www.centos.org/"
[2024-10-22 04:43:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-10-22 04:43:11] 
[2024-10-22 04:43:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-10-22 04:43:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-10-22 04:43:11] REDHAT_SUPPORT_PRODUCT="centos"
[2024-10-22 04:43:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-10-22 04:43:11] 
[2024-10-22 04:43:11] 2024-10-22 04:42:57,341 | INFO     | **************************************
[2024-10-22 04:43:11] 2024-10-22 04:42:57,844 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/5
[2024-10-22 04:43:11] 2024-10-22 04:42:57,866 | INFO     | sufficient remaining disk space (328458043392 B)
[2024-10-22 04:43:11] 2024-10-22 04:42:57,866 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-10-22 04:43:11] 2024-10-22 04:42:57,867 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-10-22 04:43:11] 2024-10-22 04:42:57,867 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-10-22 04:43:11] 2024-10-22 04:42:57,867 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-10-22 04:43:11] 2024-10-22 04:42:57,867 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-10-22 04:43:11] 2024-10-22 04:42:57,868 | INFO     | found 0 job(s) in 20 queues
[2024-10-22 04:43:11] 2024-10-22 04:42:57,868 | INFO     | aborting loop
[2024-10-22 04:43:11] 2024-10-22 04:42:57,868 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-10-22 04:43:11] 2024-10-22 04:42:57,869 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-10-22 04:43:11] 2024-10-22 04:42:58,155 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-10-22 04:43:11] 2024-10-22 04:42:58,281 | INFO     | all data control threads have been joined
[2024-10-22 04:43:11] 2024-10-22 04:42:58,389 | INFO     | all job control threads have been joined
[2024-10-22 04:43:11] 2024-10-22 04:42:58,869 | INFO     | [job] retrieve thread has finished
[2024-10-22 04:43:11] 2024-10-22 04:42:58,873 | INFO     | [job] job monitor thread has finished
[2024-10-22 04:43:11] 2024-10-22 04:42:58,874 | INFO     | [job] queue monitor thread has finished
[2024-10-22 04:43:11] 2024-10-22 04:42:58,995 | INFO     | all payload control threads have been joined
[2024-10-22 04:43:11] 2024-10-22 04:42:59,173 | INFO     | [payload] validate_pre thread has finished
[2024-10-22 04:43:11] 2024-10-22 04:42:59,285 | INFO     | [data] control thread has finished
[2024-10-22 04:43:11] 2024-10-22 04:42:59,394 | INFO     | [job] control thread has finished
[2024-10-22 04:43:11] 2024-10-22 04:42:59,425 | INFO     | [data] copytool_in thread has finished
[2024-10-22 04:43:11] 2024-10-22 04:42:59,426 | INFO     | [job] create_data_payload thread has finished
[2024-10-22 04:43:11] 2024-10-22 04:42:59,429 | INFO     | [job] validate thread has finished
[2024-10-22 04:43:11] 2024-10-22 04:42:59,560 | INFO     | [payload] execute_payloads thread has finished
[2024-10-22 04:43:11] 2024-10-22 04:42:59,741 | INFO     | [payload] run_realtimelog thread has finished
[2024-10-22 04:43:11] 2024-10-22 04:42:59,978 | INFO     | [payload] failed_post thread has finished
[2024-10-22 04:43:11] 2024-10-22 04:43:00,001 | INFO     | [payload] control thread has finished
[2024-10-22 04:43:11] 2024-10-22 04:43:00,157 | INFO     | [data] copytool_out thread has finished
[2024-10-22 04:43:11] 2024-10-22 04:43:00,469 | INFO     | [payload] validate_post thread has finished
[2024-10-22 04:43:11] 2024-10-22 04:43:00,922 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-10-22 04:43:11] 2024-10-22 04:43:04,928 | INFO     | [data] queue_monitor thread has finished
[2024-10-22 04:43:11] 2024-10-22 04:43:06,485 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140202165413696)>', '<ExcThread(monitor, started 140201783437056)>']
[2024-10-22 04:43:11] 2024-10-22 04:43:06,913 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-10-22 04:43:11] 2024-10-22 04:43:06,913 | INFO     | [monitor] control thread has ended
[2024-10-22 04:43:11] 2024-10-22 04:43:11,509 | INFO     | all workflow threads have been joined
[2024-10-22 04:43:11] 2024-10-22 04:43:11,509 | INFO     | end of generic workflow (traces error code: 0)
[2024-10-22 04:43:11] 2024-10-22 04:43:11,510 | INFO     | traces error code: 0
[2024-10-22 04:43:11] 2024-10-22 04:43:11,510 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-10-22 04:43:11] 2024-10-22 04:43:11,644 [wrapper] ==== pilot stdout END ====
[2024-10-22 04:43:11] 2024-10-22 04:43:11,648 [wrapper] ==== wrapper stdout RESUME ====
[2024-10-22 04:43:11] 2024-10-22 04:43:11,651 [wrapper] pilotpid: 926352
[2024-10-22 04:43:11] 2024-10-22 04:43:11,655 [wrapper] Pilot exit status: 0
[2024-10-22 04:43:11] 2024-10-22 04:43:11,667 [wrapper] pandaids: 6374632848
[2024-10-22 04:43:11] 2024-10-22 04:43:11,765 [wrapper] cleanup supervisor_pilot 1195116 926353
[2024-10-22 04:43:11] 2024-10-22 04:43:11,769 [wrapper] Test setup, not cleaning
[2024-10-22 04:43:11] 2024-10-22 04:43:11,772 [wrapper] ==== wrapper stdout END ====
[2024-10-22 04:43:11] 2024-10-22 04:43:11,776 [wrapper] ==== wrapper stderr END ====
[2024-10-22 04:43:11] 2024-10-22 04:43:11,782 [wrapper] apfmon messages muted
[2024-10-22 04:43:11]  *** Error codes and diagnostics ***
[2024-10-22 04:43:11]     "exeErrorCode": 0,
[2024-10-22 04:43:11]     "exeErrorDiag": "",
[2024-10-22 04:43:11]     "pilotErrorCode": 0,
[2024-10-22 04:43:11]     "pilotErrorDiag": "",
[2024-10-22 04:43:11]  *** Listing of results directory ***
[2024-10-22 04:43:11] total 591424
[2024-10-22 04:43:11] -rw-r--r-- 1 boinc boinc    486088 Oct 22 01:40 pilot3.tar.gz
[2024-10-22 04:43:11] -rwx------ 1 boinc boinc     33946 Oct 22 02:00 runpilot2-wrapper.sh
[2024-10-22 04:43:11] -rw-r--r-- 1 boinc boinc      5654 Oct 22 02:00 queuedata.json
[2024-10-22 04:43:11] -rw-rw-r-- 1 boinc boinc       100 Oct 22 03:31 wrapper_26015_x86_64-pc-linux-gnu
[2024-10-22 04:43:11] -rwxr-xr-x 1 boinc boinc      7986 Oct 22 03:31 run_atlas
[2024-10-22 04:43:11] -rw-rw-r-- 1 boinc boinc       105 Oct 22 03:31 job.xml
[2024-10-22 04:43:11] -rw-r--r-- 2 boinc boinc     17539 Oct 22 03:31 start_atlas.sh
[2024-10-22 04:43:11] drwxrwx--x 2 boinc boinc      4096 Oct 22 03:31 shared
[2024-10-22 04:43:11] -rw-r--r-- 2 boinc boinc    499662 Oct 22 03:31 input.tar.gz
[2024-10-22 04:43:11] -rw-rw-r-- 1 boinc boinc      6957 Oct 22 03:31 init_data.xml
[2024-10-22 04:43:11] -rw-r--r-- 2 boinc boinc 446463829 Oct 22 03:31 EVNT.41079386._000023.pool.root.1
[2024-10-22 04:43:11] -rw-rw-r-- 1 boinc boinc         0 Oct 22 03:31 boinc_lockfile
[2024-10-22 04:43:11] -rw-rw-r-- 1 boinc boinc      2594 Oct 22 03:31 pandaJob.out
[2024-10-22 04:43:11] -rw------- 1 boinc boinc       460 Oct 22 03:32 setup.sh.local
[2024-10-22 04:43:11] -rw------- 1 boinc boinc   1023975 Oct 22 03:33 agis_schedconf.cvmfs.json
[2024-10-22 04:43:11] -rw------- 1 boinc boinc   1608777 Oct 22 03:33 agis_ddmendpoints.agis.ALL.json
[2024-10-22 04:43:11] drwx------ 4 boinc boinc      4096 Oct 22 03:33 pilot3
[2024-10-22 04:43:11] -rw------- 1 boinc boinc 153804022 Oct 22 04:42 HITS.41079388._000800.pool.root.1
[2024-10-22 04:43:11] -rw-rw-r-- 1 boinc boinc       531 Oct 22 04:42 boinc_task_state.xml
[2024-10-22 04:43:11] -rw------- 1 boinc boinc      1023 Oct 22 04:42 memory_monitor_summary.json
[2024-10-22 04:43:11] -rw------- 1 boinc boinc    342019 Oct 22 04:42 log.41079388._000800.job.log.tgz.1
[2024-10-22 04:43:11] -rw------- 1 boinc boinc      7644 Oct 22 04:42 heartbeat.json
[2024-10-22 04:43:11] -rw------- 1 boinc boinc        95 Oct 22 04:42 pilot_heartbeat.json
[2024-10-22 04:43:11] -rw-rw-r-- 1 boinc boinc      8192 Oct 22 04:43 boinc_mmap_file
[2024-10-22 04:43:11] -rw-rw-r-- 1 boinc boinc        27 Oct 22 04:43 wrapper_checkpoint.txt
[2024-10-22 04:43:11] -rw------- 1 boinc boinc      4362 Oct 22 04:43 pilotlog.txt
[2024-10-22 04:43:11] -rw------- 1 boinc boinc    402294 Oct 22 04:43 log.41079388._000800.job.log.1
[2024-10-22 04:43:11] -rw------- 1 boinc boinc       357 Oct 22 04:43 output.list
[2024-10-22 04:43:11] -rw-rw-r-- 1 boinc boinc       620 Oct 22 04:43 runtime_log
[2024-10-22 04:43:11] -rw------- 1 boinc boinc    768000 Oct 22 04:43 result.tar.gz
[2024-10-22 04:43:11] -rw-rw-r-- 1 boinc boinc     11759 Oct 22 04:43 runtime_log.err
[2024-10-22 04:43:11] -rw------- 1 boinc boinc       640 Oct 22 04:43 TDrMDm1MJN6n7OlckoGmwREmGgkVDo1bjSoqOlfODmv39KDmdJvFFn.diag
[2024-10-22 04:43:11] -rw-rw-r-- 1 boinc boinc     20978 Oct 22 04:43 stderr.txt
[2024-10-22 04:43:11] HITS file was successfully produced:
[2024-10-22 04:43:11] -rw------- 1 boinc boinc 153804022 Oct 22 04:42 shared/HITS.pool.root.1
[2024-10-22 04:43:11]  *** Contents of shared directory: ***
[2024-10-22 04:43:11] total 587468
[2024-10-22 04:43:11] -rw-r--r-- 2 boinc boinc     17539 Oct 22 03:31 start_atlas.sh
[2024-10-22 04:43:11] -rw-r--r-- 2 boinc boinc    499662 Oct 22 03:31 input.tar.gz
[2024-10-22 04:43:11] -rw-r--r-- 2 boinc boinc 446463829 Oct 22 03:31 ATLAS.root_0
[2024-10-22 04:43:11] -rw------- 1 boinc boinc 153804022 Oct 22 04:42 HITS.pool.root.1
[2024-10-22 04:43:11] -rw------- 1 boinc boinc    768000 Oct 22 04:43 result.tar.gz
04:43:12 (913223): run_atlas exited; CPU time 30861.612743
04:43:12 (913223): called boinc_finish(0)

</stderr_txt>
]]>

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