Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2024-10-22 03:17:48 (5644): Detected: vboxwrapper 26206
2024-10-22 03:17:48 (5644): Detected: BOINC client v8.0.2
2024-10-22 03:17:49 (5644): Detected: VirtualBox VboxManage Interface (Version: 7.0.22)
2024-10-22 03:17:49 (5644): Successfully copied 'init_data.xml' to the shared directory.
2024-10-22 03:17:50 (5644): Create VM. (boinc_2f9dc79933b7fa69, slot#2)
2024-10-22 03:17:50 (5644): Setting Memory Size for VM. (4400MB)
2024-10-22 03:17:51 (5644): Setting CPU Count for VM. (4)
2024-10-22 03:17:51 (5644): Setting Chipset Options for VM.
2024-10-22 03:17:51 (5644): Setting Graphics Controller Options for VM.
2024-10-22 03:17:51 (5644): Setting Boot Options for VM.
2024-10-22 03:17:52 (5644): Setting Network Configuration for NAT.
2024-10-22 03:17:52 (5644): Enabling VM Network Access.
2024-10-22 03:17:52 (5644): Disabling USB Support for VM.
2024-10-22 03:17:52 (5644): Disabling COM Port Support for VM.
2024-10-22 03:17:53 (5644): Disabling LPT Port Support for VM.
2024-10-22 03:17:53 (5644): Disabling Audio Support for VM.
2024-10-22 03:17:53 (5644): Disabling Clipboard Support for VM.
2024-10-22 03:17:53 (5644): Disabling Drag and Drop Support for VM.
2024-10-22 03:17:54 (5644): Adding storage controller(s) to VM.
2024-10-22 03:17:54 (5644): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-10-22 03:17:54 (5644): Adding VirtualBox Guest Additions to VM.
2024-10-22 03:17:55 (5644): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-10-22 03:17:55 (5644): forwarding host port 44566 to guest port 80
2024-10-22 03:17:55 (5644): Enabling remote desktop for VM.
2024-10-22 03:17:56 (5644): Enabling shared directory for VM.
2024-10-22 03:17:56 (5644): Starting VM using VBoxManage interface. (boinc_2f9dc79933b7fa69, slot#2)
2024-10-22 03:18:04 (5644): Successfully started VM. (PID = '4936')
2024-10-22 03:18:04 (5644): Reporting VM Process ID to BOINC.
2024-10-22 03:18:04 (5644): Guest Log: BIOS: VirtualBox 7.0.22
2024-10-22 03:18:04 (5644): Guest Log: CPUID EDX: 0x178bfbff
2024-10-22 03:18:04 (5644): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-10-22 03:18:04 (5644): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-10-22 03:18:04 (5644): VM state change detected. (old = 'poweredoff', new = 'running')
2024-10-22 03:18:04 (5644): Detected: Web Application Enabled (http://localhost:44566)
2024-10-22 03:18:04 (5644): Detected: Remote Desktop Enabled (localhost:44567)
2024-10-22 03:18:04 (5644): Preference change detected
2024-10-22 03:18:04 (5644): Setting CPU throttle for VM. (60%)
2024-10-22 03:18:05 (5644): Setting checkpoint interval to 999 seconds. (Higher value of (Preference: 999 seconds) or (Vbox_job.xml: 900 seconds))
2024-10-22 03:18:06 (5644): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-10-22 03:18:06 (5644): Guest Log: BIOS: Booting from Hard Disk...
2024-10-22 03:18:10 (5644): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-10-22 03:18:10 (5644): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-10-22 03:18:10 (5644): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-10-22 03:18:10 (5644): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-10-22 03:18:10 (5644): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-10-22 03:18:10 (5644): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-10-22 03:18:10 (5644): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-10-22 03:18:10 (5644): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-10-22 03:18:10 (5644): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-10-22 03:18:10 (5644): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-10-22 03:18:10 (5644): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-10-22 03:18:10 (5644): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-10-22 03:18:10 (5644): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-10-22 03:18:10 (5644): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-10-22 03:18:10 (5644): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-10-22 03:18:10 (5644): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-10-22 03:18:10 (5644): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-10-22 03:18:10 (5644): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-10-22 03:18:10 (5644): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-10-22 03:18:10 (5644): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-10-22 03:18:10 (5644): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-10-22 03:18:10 (5644): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-10-22 03:18:10 (5644): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-10-22 03:18:10 (5644): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-10-22 03:18:10 (5644): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-10-22 03:18:10 (5644): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-10-22 03:18:10 (5644): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-10-22 03:18:10 (5644): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-10-22 03:18:10 (5644): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-10-22 03:18:10 (5644): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-10-22 03:18:10 (5644): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-10-22 03:18:10 (5644): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-10-22 03:18:19 (5644): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-10-22 03:18:19 (5644): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-10-22 03:18:33 (5644): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-10-22 03:18:33 (5644): Guest Log: 00:00:00.000144 main     Log opened 2024-10-22T03:18:31.815606000Z
2024-10-22 03:18:33 (5644): Guest Log: 00:00:00.000354 main     OS Product: Linux
2024-10-22 03:18:33 (5644): Guest Log: 00:00:00.000404 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-10-22 03:18:33 (5644): Guest Log: 00:00:00.000448 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-10-22 03:18:33 (5644): Guest Log: 00:00:00.000492 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-10-22 03:18:33 (5644): Guest Log: 00:00:00.000494 main     Process ID: 1303
2024-10-22 03:18:33 (5644): Guest Log: 00:00:00.000495 main     Package type: LINUX_64BITS_GENERIC
2024-10-22 03:18:33 (5644): Guest Log: 00:00:00.001685 main     5.2.32 r132073 started. Verbose level = 0
2024-10-22 03:18:33 (5644): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-10-22 03:18:33 (5644): Guest Log: [INFO] Mounting shared directory
2024-10-22 03:18:33 (5644): Guest Log: [INFO] Checking for init_data.xml
2024-10-22 03:18:42 (5644): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-10-22 03:18:42 (5644): Guest Log: [INFO] Detected branch: prod
2024-10-22 03:18:43 (5644): Guest Log: 00:00:10.025677 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 462 966 000ns (GuestNow=1 729 559 923 356 057 000 ns GuestLast=1 729 567 111 819 023 000 ns fSetTimeLastLoop=true )
2024-10-22 03:18:44 (5644): Guest Log: This is the prod version of the ATLAS job wrapper
2024-10-22 03:18:44 (5644): Guest Log: Copying input files
2024-10-22 03:18:46 (5644): Guest Log: Copied input files into RunAtlas.
2024-10-22 03:18:46 (5644): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-10-22 03:18:46 (5644): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-10-22 03:18:46 (5644): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-10-22 03:18:46 (5644): Guest Log: Further information can be found at the LHC@home message board.
2024-10-22 03:18:59 (5644): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-10-22 03:18:59 (5644): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-10-22 03:18:59 (5644): Guest Log: 2.6.3.0 1580 0 32208 138600 4 1 3117399 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2024-10-22 03:19:00 (5644): Guest Log: copied the webapp to /var/www
2024-10-22 03:19:00 (5644): Guest Log: ATHENA_PROC_NUMBER=4
2024-10-22 03:19:00 (5644): Guest Log: ATHENA_CORE_NUMBER=4
2024-10-22 03:19:01 (5644): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-10-22 03:19:02 (5644): Guest Log:  *** Starting ATLAS job. (PandaID=6371217568 taskID=41621620) ***
2024-10-22 04:58:13 (5644): Status Report: Elapsed Time: '6000.167454'
2024-10-22 04:58:13 (5644): Status Report: CPU Time: '8246.578125'
2024-10-22 06:38:19 (5644): Status Report: Elapsed Time: '12000.167454'
2024-10-22 06:38:19 (5644): Status Report: CPU Time: '22638.875000'
2024-10-22 08:18:24 (5644): Status Report: Elapsed Time: '18000.167454'
2024-10-22 08:18:24 (5644): Status Report: CPU Time: '37027.671875'
2024-10-22 09:58:30 (5644): Status Report: Elapsed Time: '24000.167454'
2024-10-22 09:58:30 (5644): Status Report: CPU Time: '51414.890625'
2024-10-22 11:38:45 (5644): Status Report: Elapsed Time: '30000.167454'
2024-10-22 11:38:45 (5644): Status Report: CPU Time: '65816.687500'
2024-10-22 13:18:55 (5644): Status Report: Elapsed Time: '36000.167454'
2024-10-22 13:18:55 (5644): Status Report: CPU Time: '80216.031250'
2024-10-22 14:24:49 (5644): Guest Log:  *** Job finished ***
2024-10-22 14:24:49 (5644): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-10-22 14:24:49 (5644): Guest Log: 2024-10-22 12:24:38,637 | INFO     | [payload] control thread has finished
2024-10-22 14:24:49 (5644): Guest Log: 2024-10-22 12:24:39,613 | INFO     | [data] copytool_out thread has finished
2024-10-22 14:24:49 (5644): Guest Log: 2024-10-22 12:24:40,282 | INFO     | [data] queue_monitor thread has finished
2024-10-22 14:24:49 (5644): Guest Log: 2024-10-22 12:24:41,218 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140407832971072)>', '<ExcThread(monitor, started 140406440326912)>']
2024-10-22 14:24:49 (5644): Guest Log: 2024-10-22 12:24:41,351 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-10-22 14:24:49 (5644): Guest Log: 2024-10-22 12:24:41,351 | INFO     | [monitor] control thread has ended
2024-10-22 14:24:49 (5644): Guest Log: 2024-10-22 12:24:46,223 | INFO     | all workflow threads have been joined
2024-10-22 14:24:49 (5644): Guest Log: 2024-10-22 12:24:46,223 | INFO     | end of generic workflow (traces error code: 0)
2024-10-22 14:24:49 (5644): Guest Log: 2024-10-22 12:24:46,223 | INFO     | traces error code: 0
2024-10-22 14:24:49 (5644): Guest Log: 2024-10-22 12:24:46,223 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-10-22 14:24:49 (5644): Guest Log: 2024-10-22 12:24:46,445 [wrapper] ==== pilot stdout END ====
2024-10-22 14:24:49 (5644): Guest Log: 2024-10-22 12:24:46,451 [wrapper] ==== wrapper stdout RESUME ====
2024-10-22 14:24:49 (5644): Guest Log: 2024-10-22 12:24:46,457 [wrapper] pilotpid: 6004
2024-10-22 14:24:49 (5644): Guest Log: 2024-10-22 12:24:46,462 [wrapper] Pilot exit status: 0
2024-10-22 14:24:49 (5644): Guest Log: 2024-10-22 12:24:48,082 [wrapper] pandaids: 6371217568
2024-10-22 14:24:49 (5644): Guest Log: 2024-10-22 12:24:48,119 [wrapper] cleanup supervisor_pilot 17895 6005
2024-10-22 14:24:49 (5644): Guest Log: 2024-10-22 12:24:48,125 [wrapper] Test setup, not cleaning
2024-10-22 14:24:49 (5644): Guest Log: 2024-10-22 12:24:48,134 [wrapper] ==== wrapper stdout END ====
2024-10-22 14:24:49 (5644): Guest Log: 2024-10-22 12:24:48,143 [wrapper] ==== wrapper stderr END ====
2024-10-22 14:24:49 (5644): Guest Log: 2024-10-22 12:24:48,156 [wrapper] apfmon messages muted
2024-10-22 14:24:49 (5644): Guest Log:  *** Error codes and diagnostics ***
2024-10-22 14:24:49 (5644): Guest Log:     "exeErrorCode": 0,
2024-10-22 14:24:49 (5644): Guest Log:     "exeErrorDiag": "",
2024-10-22 14:24:49 (5644): Guest Log:     "pilotErrorCode": 0,
2024-10-22 14:24:49 (5644): Guest Log:     "pilotErrorDiag": "",
2024-10-22 14:24:49 (5644): Guest Log:  *** Listing of results directory ***
2024-10-22 14:24:49 (5644): Guest Log: total 202172
2024-10-22 14:24:49 (5644): Guest Log: -rw-r--r--. 1 atlas atlas    486088 Oct 20 15:03 pilot3.tar.gz
2024-10-22 14:24:49 (5644): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Oct 20 15:12 queuedata.json
2024-10-22 14:24:49 (5644): Guest Log: -rwx------. 1 atlas atlas     33946 Oct 20 15:13 runpilot2-wrapper.sh
2024-10-22 14:24:49 (5644): Guest Log: -rwxr-xr-x. 1 atlas atlas      9162 Oct 22 01:18 init_data.xml
2024-10-22 14:24:49 (5644): Guest Log: -rwxr-xr-x. 1 atlas atlas    499643 Oct 22 01:18 input.tar.gz
2024-10-22 14:24:49 (5644): Guest Log: -rwxr-xr-x. 1 atlas atlas     17539 Oct 22 01:18 start_atlas.sh
2024-10-22 14:24:49 (5644): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 22 01:18 EVNT.41621618._000067.pool.root.1 -> /data/./ATLAS.root_0
2024-10-22 14:24:49 (5644): Guest Log: -rw-r--r--. 1 atlas atlas      2546 Oct 22 01:19 pandaJob.out
2024-10-22 14:24:49 (5644): Guest Log: -rw-------. 1 atlas atlas       424 Oct 22 01:19 setup.sh.local
2024-10-22 14:24:49 (5644): Guest Log: -rw-------. 1 atlas atlas   1023975 Oct 22 01:26 agis_schedconf.cvmfs.json
2024-10-22 14:24:49 (5644): Guest Log: drwx------. 4 atlas atlas      4096 Oct 22 01:27 pilot3
2024-10-22 14:24:49 (5644): Guest Log: -rw-------. 1 atlas atlas 194949706 Oct 22 12:23 HITS.41621620._014337.pool.root.1
2024-10-22 14:24:49 (5644): Guest Log: -rw-------. 1 atlas atlas        95 Oct 22 12:24 pilot_heartbeat.json
2024-10-22 14:24:49 (5644): Guest Log: -rw-------. 1 atlas atlas      1029 Oct 22 12:24 memory_monitor_summary.json
2024-10-22 14:24:49 (5644): Guest Log: -rw-------. 1 atlas atlas   1611897 Oct 22 12:24 agis_ddmendpoints.agis.ALL.json
2024-10-22 14:24:49 (5644): Guest Log: -rw-------. 1 atlas atlas    503413 Oct 22 12:24 log.41621620._014337.job.log.tgz.1
2024-10-22 14:24:49 (5644): Guest Log: -rw-------. 1 atlas atlas      7739 Oct 22 12:24 heartbeat.json
2024-10-22 14:24:49 (5644): Guest Log: -rw-------. 1 atlas atlas      4275 Oct 22 12:24 pilotlog.txt
2024-10-22 14:24:49 (5644): Guest Log: -rw-------. 1 atlas atlas   3639424 Oct 22 12:24 log.41621620._014337.job.log.1
2024-10-22 14:24:49 (5644): Guest Log: -rw-------. 1 atlas atlas       357 Oct 22 12:24 output.list
2024-10-22 14:24:49 (5644): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 22 12:24 runtime_log
2024-10-22 14:24:49 (5644): Guest Log: -rw-------. 1 atlas atlas   4157440 Oct 22 12:24 result.tar.gz
2024-10-22 14:24:49 (5644): Guest Log: -rw-r--r--. 1 atlas atlas     10938 Oct 22 12:24 runtime_log.err
2024-10-22 14:24:49 (5644): Guest Log: -rw-------. 1 atlas atlas       652 Oct 22 12:24 mUnNDmInmM6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmzySLDmYDT3un.diag
2024-10-22 14:24:49 (5644): Guest Log: Looking for outputfile HITS.41621620._014337.pool.root.1
2024-10-22 14:24:49 (5644): Guest Log: HITS file was successfully produced
2024-10-22 14:24:49 (5644): Guest Log: -rw-------. 1 atlas atlas 194949706 Oct 22 12:23 /home/atlas/RunAtlas/HITS.41621620._014337.pool.root.1
2024-10-22 14:24:51 (5644): Guest Log: Successfully finished the ATLAS job!
2024-10-22 14:24:51 (5644): Guest Log: Copying the results back to the shared directory!
2024-10-22 14:24:51 (5644): Guest Log:  *** Contents of shared directory: ***
2024-10-22 14:24:51 (5644): Guest Log: total 395908
2024-10-22 14:24:51 (5644): Guest Log: -rwxrwxrwx. 1 root root 205765898 Oct 22 01:17 ATLAS.root_0
2024-10-22 14:24:51 (5644): Guest Log: -rwxrwxrwx. 1 root root 194949706 Oct 22 12:24 HITS.pool.root.1
2024-10-22 14:24:51 (5644): Guest Log: -rwxrwxrwx. 1 root root      9162 Oct 22 01:17 init_data.xml
2024-10-22 14:24:51 (5644): Guest Log: -rwxrwxrwx. 1 root root    499643 Oct 20 17:27 input.tar.gz
2024-10-22 14:24:51 (5644): Guest Log: -rwxrwxrwx. 1 root root   4157440 Oct 22 12:24 result.tar.gz
2024-10-22 14:24:51 (5644): Guest Log: -rwxrwxrwx. 1 root root     17539 Oct 20 17:27 start_atlas.sh
2024-10-22 14:24:51 (5644): Guest Log:  *** Success! Shutting down the machine. ***
2024-10-22 14:24:51 (5644): VM Completion File Detected.
2024-10-22 14:24:51 (5644): Powering off VM.
2024-10-22 14:24:53 (5644): Successfully stopped VM.
2024-10-22 14:24:53 (5644): Deregistering VM. (boinc_2f9dc79933b7fa69, slot#2)
2024-10-22 14:24:53 (5644): Removing network bandwidth throttle group from VM.
2024-10-22 14:24:53 (5644): Removing VM from VirtualBox.
14:24:58 (5644): called boinc_finish(0)

</stderr_txt>
]]>

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