Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
18:36:00 (1518218): wrapper (7.7.26015): starting
18:36:00 (1518218): wrapper: running run_atlas (--nthreads 8)
[2024-10-11 18:36:00] Arguments: --nthreads 8
[2024-10-11 18:36:00] Threads: 8
[2024-10-11 18:36:00] Checking for CVMFS
[2024-10-11 18:36:00] Probing /cvmfs/atlas.cern.ch... OK
[2024-10-11 18:36:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-10-11 18:36:00] Running cvmfs_config stat atlas.cern.ch
[2024-10-11 18:36:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-10-11 18:36:01] 2.11.5.0 1186012 231 56164 138228 1 187 3232222 4096000 1522 130560 0 1092932 99.996 115956 4245 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch DIRECT 1
[2024-10-11 18:36:01] CVMFS is ok
[2024-10-11 18:36:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-10-11 18:36:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-10-11 18:36:01] Small home clusters do not require a local http proxy but it is suggested if
[2024-10-11 18:36:01] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2024-10-11 18:36:01] Further information can be found at the LHC@home message board.
[2024-10-11 18:36:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-10-11 18:36:01] Checking for apptainer binary...
[2024-10-11 18:36:01] apptainer is not installed, using version from CVMFS
[2024-10-11 18:36:01] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-10-11 18:36:01] x570ud2
[2024-10-11 18:36:01] apptainer works
[2024-10-11 18:36:01] Set ATHENA_PROC_NUMBER=8
[2024-10-11 18:36:01] Set ATHENA_CORE_NUMBER=8
[2024-10-11 18:36:01] Starting ATLAS job with PandaID=6363880572
[2024-10-11 18:36:01] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-10-11 19:16:02]  *** The last 200 lines of the pilot log: ***
[2024-10-11 19:16:02]  is_altstaged=None
[2024-10-11 19:16:02]  is_tar=False
[2024-10-11 19:16:02]  lfn=log.41621644._001801.job.log.tgz.1
[2024-10-11 19:16:02]  mtime=0
[2024-10-11 19:16:02]  protocol_id=None
[2024-10-11 19:16:02]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-10-11 19:16:02]  replicas=None
[2024-10-11 19:16:02]  scope=mc23_5p36TeV
[2024-10-11 19:16:02]  status=None
[2024-10-11 19:16:02]  status_code=0
[2024-10-11 19:16:02]  storage_token=
[2024-10-11 19:16:02]  surl=/var/lib/boinc-client/slots/5/PanDA_Pilot-6363880572/log.41621644._001801.job.log.tgz.1
[2024-10-11 19:16:02]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_5p36TeV/69/bb/log.41621644._001801.job.log.tgz.1
[2024-10-11 19:16:02]  workdir=None
[2024-10-11 19:16:02] ]
[2024-10-11 19:16:02] 2024-10-12 01:15:43,159 | INFO     | transferring file log.41621644._001801.job.log.tgz.1 from /var/lib/boinc-client/slots/5/PanDA_Pilot-6363880572/log.41621644._001801.job.log.tgz.1 to /var/lib/boinc
[2024-10-11 19:16:02] 2024-10-12 01:15:43,160 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/5/PanDA_Pilot-6363880572/log.41621644._001801.job.log.tgz.1 /var/lib/boinc-client/slots/5/log.416216
[2024-10-11 19:16:02] 2024-10-12 01:15:43,170 | INFO     | adding to output.list: log.41621644._001801.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_5p36TeV/69/bb/log.41621644._001801.job.log.tg
[2024-10-11 19:16:02] 2024-10-12 01:15:43,170 | INFO     | alt stage-out settings: ['pl', 'pw', 'w', 'default'], is_unified=False, altstageout=False, remain_files=0, has_altstorage=True
[2024-10-11 19:16:02] 2024-10-12 01:15:43,170 | INFO     | summary of transferred files:
[2024-10-11 19:16:02] 2024-10-12 01:15:43,170 | INFO     |  -- lfn=log.41621644._001801.job.log.tgz.1, status_code=0, status=transferred
[2024-10-11 19:16:02] 2024-10-12 01:15:43,171 | INFO     | stage-out finished correctly
[2024-10-11 19:16:02] 2024-10-12 01:15:44,432 | WARNING  | process 1528703 is no longer using CPU - aborting
[2024-10-11 19:16:02] 2024-10-12 01:15:46,370 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-10-11 19:16:02] 2024-10-12 01:15:46,935 | INFO     | monitor loop #191: job 0:6363880572 is in state 'finished'
[2024-10-11 19:16:02] 2024-10-12 01:15:46,935 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-10-11 19:16:02] 2024-10-12 01:15:48,241 | INFO     | job 6363880572 has state=finished
[2024-10-11 19:16:02] 2024-10-12 01:15:48,241 | INFO     | preparing for final server update for job 6363880572 in state='finished'
[2024-10-11 19:16:02] 2024-10-12 01:15:48,241 | INFO     | this job has now completed (state=finished)
[2024-10-11 19:16:02] 2024-10-12 01:15:48,241 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-10-11 19:16:02] 2024-10-12 01:15:48,241 | INFO     | log transfer has been attempted: DONE
[2024-10-11 19:16:02] 2024-10-12 01:15:48,241 | INFO     | job 6363880572 has finished - writing final server update
[2024-10-11 19:16:02] 2024-10-12 01:15:48,241 | INFO     | total number of processed events: 400 (read)
[2024-10-11 19:16:02] 2024-10-12 01:15:48,243 | INFO     | executing command: lscpu
[2024-10-11 19:16:02] 2024-10-12 01:15:48,259 | INFO     | found 16 cores (16 cores per socket, 1 sockets)
[2024-10-11 19:16:02] 2024-10-12 01:15:48,259 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-10-11 19:16:02] 2024-10-12 01:15:48,277 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-10-11 19:16:02] 2024-10-12 01:15:49,438 | INFO     | monitor loop #192: job 0:6363880572 is in state 'finished'
[2024-10-11 19:16:02] 2024-10-12 01:15:49,438 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-10-11 19:16:02] 2024-10-12 01:15:49,998 | INFO     | CPU arch script returned: x86-64-v3
[2024-10-11 19:16:02] 2024-10-12 01:15:49,998 | INFO     | using path: /var/lib/boinc-client/slots/5/PanDA_Pilot-6363880572/memory_monitor_summary.json (trf name=prmon)
[2024-10-11 19:16:02] 2024-10-12 01:15:49,998 | INFO     | extracted standard info from prmon json
[2024-10-11 19:16:02] 2024-10-12 01:15:49,999 | INFO     | extracted standard memory fields from prmon json
[2024-10-11 19:16:02] 2024-10-12 01:15:49,999 | WARNING  | GPU info not found in prmon json: 'gpu'
[2024-10-11 19:16:02] 2024-10-12 01:15:49,999 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-10-11 19:16:02] 2024-10-12 01:15:49,999 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-10-11 19:16:02] 2024-10-12 01:15:49,999 | INFO     | fitting pss+swap vs Time
[2024-10-11 19:16:02] 2024-10-12 01:15:49,999 | INFO     | model: linear, x: [1728693689.0, 1728693750.0, 1728693811.0, 1728693872.0, 1728693933.0, 1728693994.0, 1728694055.0, 1728694116.0, 1728694177.0, 1728694238.0, 1728
[2024-10-11 19:16:02] 2024-10-12 01:15:50,000 | INFO     | sum of square deviations: 10150888.0
[2024-10-11 19:16:02] 2024-10-12 01:15:50,000 | INFO     | sum of deviations: 8345855940.5
[2024-10-11 19:16:02] 2024-10-12 01:15:50,000 | INFO     | mean x: 1728694634.5
[2024-10-11 19:16:02] 2024-10-12 01:15:50,000 | INFO     | mean y: 2294134.15625
[2024-10-11 19:16:02] 2024-10-12 01:15:50,000 | INFO     | -- intersect: -1421295663704.8328
[2024-10-11 19:16:02] 2024-10-12 01:15:50,000 | INFO     | intersect: -1421295663704.8328
[2024-10-11 19:16:02] 2024-10-12 01:15:50,000 | INFO     | chi2: 1.2744363782980594
[2024-10-11 19:16:02] 2024-10-12 01:15:50,000 | INFO     | -- intersect: -1421295663704.8328
[2024-10-11 19:16:02] 2024-10-12 01:15:50,000 | INFO     | current memory leak: 822.18 B/s (using 32 data points, chi2=1.27)
[2024-10-11 19:16:02] 2024-10-12 01:15:50,000 | INFO     | ..............................
[2024-10-11 19:16:02] 2024-10-12 01:15:50,000 | INFO     | . Timing measurements:
[2024-10-11 19:16:02] 2024-10-12 01:15:50,000 | INFO     | . get job = 0 s
[2024-10-11 19:16:02] 2024-10-12 01:15:50,000 | INFO     | . initial setup = 2 s
[2024-10-11 19:16:02] 2024-10-12 01:15:50,000 | INFO     | . payload setup = 2 s
[2024-10-11 19:16:02] 2024-10-12 01:15:50,000 | INFO     | . stage-in = 0 s
[2024-10-11 19:16:02] 2024-10-12 01:15:50,000 | INFO     | . payload execution = 2356 s
[2024-10-11 19:16:02] 2024-10-12 01:15:50,000 | INFO     | . stage-out = 0 s
[2024-10-11 19:16:02] 2024-10-12 01:15:50,000 | INFO     | . log creation = 0 s
[2024-10-11 19:16:02] 2024-10-12 01:15:50,000 | INFO     | ..............................
[2024-10-11 19:16:02] 2024-10-12 01:15:50,036 | INFO     | 
[2024-10-11 19:16:02] 2024-10-12 01:15:50,037 | INFO     | job summary report
[2024-10-11 19:16:02] 2024-10-12 01:15:50,037 | INFO     | --------------------------------------------------
[2024-10-11 19:16:02] 2024-10-12 01:15:50,037 | INFO     | PanDA job id: 6363880572
[2024-10-11 19:16:02] 2024-10-12 01:15:50,037 | INFO     | task id: 41621644
[2024-10-11 19:16:02] 2024-10-12 01:15:50,037 | INFO     | errors: (none)
[2024-10-11 19:16:02] 2024-10-12 01:15:50,037 | INFO     | status: LOG_TRANSFER = DONE 
[2024-10-11 19:16:02] 2024-10-12 01:15:50,037 | INFO     | pilot state: finished 
[2024-10-11 19:16:02] 2024-10-12 01:15:50,037 | INFO     | transexitcode: 0
[2024-10-11 19:16:02] 2024-10-12 01:15:50,037 | INFO     | exeerrorcode: 0
[2024-10-11 19:16:02] 2024-10-12 01:15:50,037 | INFO     | exeerrordiag: 
[2024-10-11 19:16:02] 2024-10-12 01:15:50,037 | INFO     | exitcode: 0
[2024-10-11 19:16:02] 2024-10-12 01:15:50,037 | INFO     | exitmsg: OK
[2024-10-11 19:16:02] 2024-10-12 01:15:50,037 | INFO     | cpuconsumptiontime: 12261 s
[2024-10-11 19:16:02] 2024-10-12 01:15:50,037 | INFO     | nevents: 400
[2024-10-11 19:16:02] 2024-10-12 01:15:50,037 | INFO     | neventsw: 0
[2024-10-11 19:16:02] 2024-10-12 01:15:50,037 | INFO     | pid: 1528703
[2024-10-11 19:16:02] 2024-10-12 01:15:50,037 | INFO     | pgrp: 1528703
[2024-10-11 19:16:02] 2024-10-12 01:15:50,037 | INFO     | corecount: 8
[2024-10-11 19:16:02] 2024-10-12 01:15:50,037 | INFO     | event service: False
[2024-10-11 19:16:02] 2024-10-12 01:15:50,037 | INFO     | sizes: {0: 2437321, 2: 2437527, 11: 2437555, 2363: 2462648, 2364: 2471686, 2367: 2471742, 2371: 2472040}
[2024-10-11 19:16:02] 2024-10-12 01:15:50,037 | INFO     | --------------------------------------------------
[2024-10-11 19:16:02] 2024-10-12 01:15:50,037 | INFO     | 
[2024-10-11 19:16:02] 2024-10-12 01:15:50,037 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/5
[2024-10-11 19:16:02] 2024-10-12 01:15:50,048 | INFO     | queue jobs had 0 job(s) [purged]
[2024-10-11 19:16:02] 2024-10-12 01:15:50,049 | INFO     | queue payloads had 0 job(s) [purged]
[2024-10-11 19:16:02] 2024-10-12 01:15:50,049 | INFO     | queue data_in had 0 job(s) [purged]
[2024-10-11 19:16:02] 2024-10-12 01:15:50,049 | INFO     | queue data_out had 0 job(s) [purged]
[2024-10-11 19:16:02] 2024-10-12 01:15:50,049 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-10-11 19:16:02] 2024-10-12 01:15:50,049 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-10-11 19:16:02] 2024-10-12 01:15:50,049 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-10-11 19:16:02] 2024-10-12 01:15:50,049 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-10-11 19:16:02] 2024-10-12 01:15:50,049 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-10-11 19:16:02] 2024-10-12 01:15:50,049 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-10-11 19:16:02] 2024-10-12 01:15:50,049 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-10-11 19:16:02] 2024-10-12 01:15:50,049 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-10-11 19:16:02] 2024-10-12 01:15:50,049 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-10-11 19:16:02] 2024-10-12 01:15:50,049 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-10-11 19:16:02] 2024-10-12 01:15:50,049 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-10-11 19:16:02] 2024-10-12 01:15:50,049 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-10-11 19:16:02] 2024-10-12 01:15:50,049 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-10-11 19:16:02] 2024-10-12 01:15:50,049 | INFO     | queue completed_jobids has 1 job(s)
[2024-10-11 19:16:02] 2024-10-12 01:15:50,049 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-10-11 19:16:02] 2024-10-12 01:15:50,049 | INFO     | queue messages had 0 job(s) [purged]
[2024-10-11 19:16:02] 2024-10-12 01:15:50,049 | INFO     | job 6363880572 has completed (purged errors)
[2024-10-11 19:16:02] 2024-10-12 01:15:50,049 | INFO     | overall cleanup function is called
[2024-10-11 19:16:02] 2024-10-12 01:15:51,056 | INFO     | --- collectZombieJob: --- 10, [1528703]
[2024-10-11 19:16:02] 2024-10-12 01:15:51,056 | INFO     | zombie collector waiting for pid 1528703
[2024-10-11 19:16:02] 2024-10-12 01:15:51,056 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-10-11 19:16:02] 2024-10-12 01:15:51,056 | INFO     | collected zombie processes
[2024-10-11 19:16:02] 2024-10-12 01:15:51,056 | INFO     | will  attempt to kill all subprocesses of pid=1528703
[2024-10-11 19:16:02] 2024-10-12 01:15:51,101 | INFO     | process IDs to be killed: [1528703] (in reverse order)
[2024-10-11 19:16:02] 2024-10-12 01:15:51,131 | WARNING  | found no corresponding commands to process id(s)
[2024-10-11 19:16:02] 2024-10-12 01:15:51,131 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-10-11 19:16:02] 2024-10-12 01:15:51,133 | INFO     | did not find any defunct processes belonging to 1528703
[2024-10-11 19:16:02] 2024-10-12 01:15:51,135 | INFO     | did not find any defunct processes belonging to 1528703
[2024-10-11 19:16:02] 2024-10-12 01:15:51,135 | INFO     | ready for new job
[2024-10-11 19:16:02] 2024-10-12 01:15:51,135 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-10-11 19:16:02] 2024-10-12 01:15:51,136 | INFO     | *************************************
[2024-10-11 19:16:02] 2024-10-12 01:15:51,136 | INFO     | ***  PanDA Pilot version 3.8.2.8  ***
[2024-10-11 19:16:02] 2024-10-12 01:15:51,136 | INFO     | *************************************
[2024-10-11 19:16:02] 2024-10-12 01:15:51,136 | INFO     | 
[2024-10-11 19:16:02] 2024-10-12 01:15:51,137 | INFO     | architecture information:
[2024-10-11 19:16:02] 2024-10-12 01:15:51,137 | INFO     | executing command: cat /etc/os-release
[2024-10-11 19:16:02] 2024-10-12 01:15:51,145 | INFO     | cat /etc/os-release:
[2024-10-11 19:16:02] NAME="CentOS Linux"
[2024-10-11 19:16:02] VERSION="7 (Core)"
[2024-10-11 19:16:02] ID="centos"
[2024-10-11 19:16:02] ID_LIKE="rhel fedora"
[2024-10-11 19:16:02] VERSION_ID="7"
[2024-10-11 19:16:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-10-11 19:16:02] ANSI_COLOR="0;31"
[2024-10-11 19:16:02] CPE_NAME="cpe:/o:centos:centos:7"
[2024-10-11 19:16:02] HOME_URL="https://www.centos.org/"
[2024-10-11 19:16:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-10-11 19:16:02] 
[2024-10-11 19:16:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-10-11 19:16:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-10-11 19:16:02] REDHAT_SUPPORT_PRODUCT="centos"
[2024-10-11 19:16:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-10-11 19:16:02] 
[2024-10-11 19:16:02] 2024-10-12 01:15:51,145 | INFO     | *************************************
[2024-10-11 19:16:02] 2024-10-12 01:15:51,647 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/5
[2024-10-11 19:16:02] 2024-10-12 01:15:51,658 | INFO     | sufficient remaining disk space (514849767424 B)
[2024-10-11 19:16:02] 2024-10-12 01:15:51,658 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-10-11 19:16:02] 2024-10-12 01:15:51,658 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-10-11 19:16:02] 2024-10-12 01:15:51,658 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-10-11 19:16:02] 2024-10-12 01:15:51,658 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-10-11 19:16:02] 2024-10-12 01:15:51,658 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-10-11 19:16:02] 2024-10-12 01:15:51,659 | INFO     | found 0 job(s) in 20 queues
[2024-10-11 19:16:02] 2024-10-12 01:15:51,659 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-10-11 19:16:02] 2024-10-12 01:15:51,659 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-10-11 19:16:02] 2024-10-12 01:15:51,939 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-10-11 19:16:02] 2024-10-12 01:15:51,939 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-10-11 19:16:02] 2024-10-12 01:15:51,939 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-10-11 19:16:02] 2024-10-12 01:15:51,939 | INFO     | will abort loop
[2024-10-11 19:16:02] 2024-10-12 01:15:52,046 | INFO     | all job control threads have been joined
[2024-10-11 19:16:02] 2024-10-12 01:15:52,404 | INFO     | all payload control threads have been joined
[2024-10-11 19:16:02] 2024-10-12 01:15:52,410 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-10-11 19:16:02] 2024-10-12 01:15:52,655 | INFO     | all data control threads have been joined
[2024-10-11 19:16:02] 2024-10-12 01:15:52,663 | INFO     | [job] retrieve thread has finished
[2024-10-11 19:16:02] 2024-10-12 01:15:52,664 | INFO     | [job] queue monitor thread has finished
[2024-10-11 19:16:02] 2024-10-12 01:15:52,697 | INFO     | [payload] failed_post thread has finished
[2024-10-11 19:16:02] 2024-10-12 01:15:52,941 | INFO     | [job] job monitor thread has finished
[2024-10-11 19:16:02] 2024-10-12 01:15:53,044 | INFO     | [payload] run_realtimelog thread has finished
[2024-10-11 19:16:02] 2024-10-12 01:15:53,052 | INFO     | [job] control thread has finished
[2024-10-11 19:16:02] 2024-10-12 01:15:53,087 | INFO     | [data] copytool_in thread has finished
[2024-10-11 19:16:02] 2024-10-12 01:15:53,237 | INFO     | [payload] validate_post thread has finished
[2024-10-11 19:16:02] 2024-10-12 01:15:53,409 | INFO     | [payload] control thread has finished
[2024-10-11 19:16:02] 2024-10-12 01:15:53,585 | INFO     | [payload] execute_payloads thread has finished
[2024-10-11 19:16:02] 2024-10-12 01:15:53,660 | INFO     | [data] control thread has finished
[2024-10-11 19:16:02] 2024-10-12 01:15:53,664 | INFO     | [data] copytool_out thread has finished
[2024-10-11 19:16:02] 2024-10-12 01:15:53,904 | INFO     | [job] validate thread has finished
[2024-10-11 19:16:02] 2024-10-12 01:15:54,048 | INFO     | [job] create_data_payload thread has finished
[2024-10-11 19:16:02] 2024-10-12 01:15:54,136 | INFO     | [payload] validate_pre thread has finished
[2024-10-11 19:16:02] 2024-10-12 01:15:56,415 | INFO     | [data] queue_monitor thread has finished
[2024-10-11 19:16:02] 2024-10-12 01:15:57,610 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 128542639449920)>', '<ExcThread(monitor, started 128542220224256)>']
[2024-10-11 19:16:02] 2024-10-12 01:15:57,686 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-10-11 19:16:02] 2024-10-12 01:15:57,686 | INFO     | [monitor] control thread has ended
[2024-10-11 19:16:02] 2024-10-12 01:16:02,635 | INFO     | all workflow threads have been joined
[2024-10-11 19:16:02] 2024-10-12 01:16:02,635 | INFO     | end of generic workflow (traces error code: 0)
[2024-10-11 19:16:02] 2024-10-12 01:16:02,635 | INFO     | traces error code: 0
[2024-10-11 19:16:02] 2024-10-12 01:16:02,636 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-10-11 19:16:02] 2024-10-12 01:16:02,678 [wrapper] ==== pilot stdout END ====
[2024-10-11 19:16:02] 2024-10-12 01:16:02,680 [wrapper] ==== wrapper stdout RESUME ====
[2024-10-11 19:16:02] 2024-10-12 01:16:02,681 [wrapper] pilotpid: 1522018
[2024-10-11 19:16:02] 2024-10-12 01:16:02,683 [wrapper] Pilot exit status: 0
[2024-10-11 19:16:02] 2024-10-12 01:16:02,687 [wrapper] pandaids: 6363880572
[2024-10-11 19:16:02] 2024-10-12 01:16:02,706 [wrapper] cleanup supervisor_pilot 1561817 1522019
[2024-10-11 19:16:02] 2024-10-12 01:16:02,708 [wrapper] Test setup, not cleaning
[2024-10-11 19:16:02] 2024-10-12 01:16:02,709 [wrapper] ==== wrapper stdout END ====
[2024-10-11 19:16:02] 2024-10-12 01:16:02,710 [wrapper] ==== wrapper stderr END ====
[2024-10-11 19:16:02] 2024-10-12 01:16:02,713 [wrapper] apfmon messages muted
[2024-10-11 19:16:02]  *** Error codes and diagnostics ***
[2024-10-11 19:16:02]     "exeErrorCode": 0,
[2024-10-11 19:16:02]     "exeErrorDiag": "",
[2024-10-11 19:16:02]     "pilotErrorCode": 0,
[2024-10-11 19:16:02]     "pilotErrorDiag": "",
[2024-10-11 19:16:02]  *** Listing of results directory ***
[2024-10-11 19:16:02] total 336416
[2024-10-11 19:16:02] -rw-r--r-- 1 boinc boinc    484599 Oct 11 14:21 pilot3.tar.gz
[2024-10-11 19:16:02] -rwx------ 1 boinc boinc     33946 Oct 11 14:38 runpilot2-wrapper.sh
[2024-10-11 19:16:02] -rw-r--r-- 1 boinc boinc      5653 Oct 11 14:38 queuedata.json
[2024-10-11 19:16:02] -rw-r--r-- 1 boinc boinc       100 Oct 11 18:36 wrapper_26015_x86_64-pc-linux-gnu
[2024-10-11 19:16:02] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 18:36 run_atlas
[2024-10-11 19:16:02] -rw-r--r-- 1 boinc boinc       105 Oct 11 18:36 job.xml
[2024-10-11 19:16:02] -rw-r--r-- 2 boinc boinc     17537 Oct 11 18:36 start_atlas.sh
[2024-10-11 19:16:02] drwxrwx--x 2 boinc boinc      4096 Oct 11 18:36 shared
[2024-10-11 19:16:02] -rw-r--r-- 2 boinc boinc    498200 Oct 11 18:36 input.tar.gz
[2024-10-11 19:16:02] -rw-r--r-- 1 boinc boinc      9809 Oct 11 18:36 init_data.xml
[2024-10-11 19:16:02] -rw-r--r-- 2 boinc boinc 185571670 Oct 11 18:36 EVNT.41621642._000071.pool.root.1
[2024-10-11 19:16:02] -rw-r--r-- 1 boinc boinc         0 Oct 11 18:36 boinc_lockfile
[2024-10-11 19:16:02] -rw-r--r-- 1 boinc boinc      2593 Oct 11 18:36 pandaJob.out
[2024-10-11 19:16:02] -rw------- 1 boinc boinc       424 Oct 11 18:36 setup.sh.local
[2024-10-11 19:16:02] -rw------- 1 boinc boinc   1031004 Oct 11 18:36 agis_schedconf.cvmfs.json
[2024-10-11 19:16:02] -rw------- 1 boinc boinc   1617228 Oct 11 18:36 agis_ddmendpoints.agis.ALL.json
[2024-10-11 19:16:02] drwx------ 4 boinc boinc      4096 Oct 11 18:36 pilot3
[2024-10-11 19:16:02] -rw------- 1 boinc boinc        95 Oct 11 19:15 pilot_heartbeat.json
[2024-10-11 19:16:02] -rw------- 1 boinc boinc 153987693 Oct 11 19:15 HITS.41621644._001801.pool.root.1
[2024-10-11 19:16:02] -rw-r--r-- 1 boinc boinc       529 Oct 11 19:15 boinc_task_state.xml
[2024-10-11 19:16:02] -rw------- 1 boinc boinc      1030 Oct 11 19:15 memory_monitor_summary.json
[2024-10-11 19:16:02] -rw------- 1 boinc boinc    263997 Oct 11 19:15 log.41621644._001801.job.log.tgz.1
[2024-10-11 19:16:02] -rw------- 1 boinc boinc      7658 Oct 11 19:15 heartbeat.json
[2024-10-11 19:16:02] -rw-r--r-- 1 boinc boinc        27 Oct 11 19:15 wrapper_checkpoint.txt
[2024-10-11 19:16:02] -rw-r--r-- 1 boinc boinc      8192 Oct 11 19:15 boinc_mmap_file
[2024-10-11 19:16:02] -rw------- 1 boinc boinc      4528 Oct 11 19:16 pilotlog.txt
[2024-10-11 19:16:02] -rw------- 1 boinc boinc    264727 Oct 11 19:16 log.41621644._001801.job.log.1
[2024-10-11 19:16:02] -rw------- 1 boinc boinc       357 Oct 11 19:16 output.list
[2024-10-11 19:16:02] -rw-r--r-- 1 boinc boinc       620 Oct 11 19:16 runtime_log
[2024-10-11 19:16:02] -rw------- 1 boinc boinc    542720 Oct 11 19:16 result.tar.gz
[2024-10-11 19:16:02] -rw------- 1 boinc boinc       639 Oct 11 19:16 rXsNDmrZbJ6n9Rq4apOajLDm4fhM0noT9bVorHsSDmpVlKDmpkZDPm.diag
[2024-10-11 19:16:02] -rw-r--r-- 1 boinc boinc     11112 Oct 11 19:16 runtime_log.err
[2024-10-11 19:16:02] -rw-r--r-- 1 boinc boinc     21767 Oct 11 19:16 stderr.txt
[2024-10-11 19:16:02] HITS file was successfully produced:
[2024-10-11 19:16:02] -rw------- 1 boinc boinc 153987693 Oct 11 19:15 shared/HITS.pool.root.1
[2024-10-11 19:16:02]  *** Contents of shared directory: ***
[2024-10-11 19:16:02] total 332652
[2024-10-11 19:16:02] -rw-r--r-- 2 boinc boinc     17537 Oct 11 18:36 start_atlas.sh
[2024-10-11 19:16:02] -rw-r--r-- 2 boinc boinc    498200 Oct 11 18:36 input.tar.gz
[2024-10-11 19:16:02] -rw-r--r-- 2 boinc boinc 185571670 Oct 11 18:36 ATLAS.root_0
[2024-10-11 19:16:02] -rw------- 1 boinc boinc 153987693 Oct 11 19:15 HITS.pool.root.1
[2024-10-11 19:16:02] -rw------- 1 boinc boinc    542720 Oct 11 19:16 result.tar.gz
19:16:04 (1518218): run_atlas exited; CPU time 12236.989752
19:16:04 (1518218): called boinc_finish(0)

</stderr_txt>
]]>

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