Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2024-10-04 08:49:47 (69792): Detected: vboxwrapper 26206
2024-10-04 08:49:47 (69792): Detected: BOINC client v7.24.1
2024-10-04 08:49:52 (69792): Detected: VirtualBox VboxManage Interface (Version: 6.1.38)
2024-10-04 08:49:53 (69792): Successfully copied 'init_data.xml' to the shared directory.
2024-10-04 08:49:53 (69792): Create VM. (boinc_da682e82a8e477f1, slot#3)
2024-10-04 08:49:54 (69792): Setting Memory Size for VM. (4300MB)
2024-10-04 08:49:54 (69792): Setting CPU Count for VM. (3)
2024-10-04 08:49:54 (69792): Setting Chipset Options for VM.
2024-10-04 08:49:55 (69792): Setting Graphics Controller Options for VM.
2024-10-04 08:49:55 (69792): Setting Boot Options for VM.
2024-10-04 08:49:55 (69792): Setting Network Configuration for NAT.
2024-10-04 08:49:55 (69792): Enabling VM Network Access.
2024-10-04 08:49:56 (69792): Disabling USB Support for VM.
2024-10-04 08:49:56 (69792): Disabling COM Port Support for VM.
2024-10-04 08:49:56 (69792): Disabling LPT Port Support for VM.
2024-10-04 08:49:57 (69792): Disabling Audio Support for VM.
2024-10-04 08:49:57 (69792): Disabling Clipboard Support for VM.
2024-10-04 08:49:57 (69792): Disabling Drag and Drop Support for VM.
2024-10-04 08:49:57 (69792): Adding storage controller(s) to VM.
2024-10-04 08:49:58 (69792): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-10-04 08:49:58 (69792): Adding VirtualBox Guest Additions to VM.
2024-10-04 08:49:58 (69792): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-10-04 08:49:59 (69792): forwarding host port 51007 to guest port 80
2024-10-04 08:49:59 (69792): Enabling remote desktop for VM.
2024-10-04 08:49:59 (69792): Required extension pack not installed, remote desktop not enabled.
2024-10-04 08:49:59 (69792): Enabling shared directory for VM.
2024-10-04 08:50:00 (69792): Starting VM using VBoxManage interface. (boinc_da682e82a8e477f1, slot#3)
2024-10-04 08:50:07 (69792): Successfully started VM. (PID = '49228')
2024-10-04 08:50:07 (69792): Reporting VM Process ID to BOINC.
2024-10-04 08:50:07 (69792): Guest Log: BIOS: VirtualBox 6.1.38
2024-10-04 08:50:07 (69792): Guest Log: CPUID EDX: 0x178bfbff
2024-10-04 08:50:07 (69792): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-10-04 08:50:07 (69792): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-10-04 08:50:07 (69792): VM state change detected. (old = 'poweredoff', new = 'running')
2024-10-04 08:50:07 (69792): Detected: Web Application Enabled (http://localhost:51007)
2024-10-04 08:50:07 (69792): Preference change detected
2024-10-04 08:50:07 (69792): Setting CPU throttle for VM. (50%)
2024-10-04 08:50:07 (69792): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-10-04 08:50:09 (69792): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-10-04 08:50:09 (69792): Guest Log: BIOS: Booting from Hard Disk...
2024-10-04 08:50:12 (69792): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-10-04 08:50:12 (69792): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-10-04 08:50:12 (69792): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-10-04 08:50:12 (69792): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-10-04 08:50:12 (69792): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-10-04 08:50:12 (69792): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-10-04 08:50:12 (69792): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-10-04 08:50:12 (69792): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-10-04 08:50:12 (69792): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-10-04 08:50:12 (69792): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-10-04 08:50:12 (69792): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-10-04 08:50:12 (69792): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-10-04 08:50:12 (69792): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-10-04 08:50:12 (69792): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-10-04 08:50:12 (69792): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-10-04 08:50:12 (69792): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-10-04 08:50:12 (69792): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-10-04 08:50:12 (69792): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-10-04 08:50:12 (69792): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-10-04 08:50:12 (69792): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-10-04 08:50:12 (69792): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-10-04 08:50:12 (69792): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-10-04 08:50:12 (69792): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-10-04 08:50:12 (69792): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-10-04 08:50:12 (69792): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-10-04 08:50:12 (69792): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-10-04 08:50:12 (69792): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-10-04 08:50:12 (69792): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-10-04 08:50:12 (69792): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-10-04 08:50:12 (69792): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-10-04 08:50:12 (69792): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-10-04 08:50:12 (69792): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-10-04 08:50:19 (69792): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-10-04 08:50:19 (69792): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-10-04 08:50:29 (69792): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-10-04 08:50:29 (69792): Guest Log: 00:00:00.000255 main     Log opened 2024-10-04T08:50:27.708638000Z
2024-10-04 08:50:29 (69792): Guest Log: 00:00:00.000425 main     OS Product: Linux
2024-10-04 08:50:29 (69792): Guest Log: 00:00:00.000493 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-10-04 08:50:29 (69792): Guest Log: 00:00:00.000551 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-10-04 08:50:29 (69792): Guest Log: 00:00:00.000609 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-10-04 08:50:29 (69792): Guest Log: 00:00:00.000612 main     Process ID: 1282
2024-10-04 08:50:29 (69792): Guest Log: 00:00:00.000613 main     Package type: LINUX_64BITS_GENERIC
2024-10-04 08:50:29 (69792): Guest Log: 00:00:00.002467 main     5.2.32 r132073 started. Verbose level = 0
2024-10-04 08:50:29 (69792): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-10-04 08:50:29 (69792): Guest Log: [INFO] Mounting shared directory
2024-10-04 08:50:29 (69792): Guest Log: [INFO] Checking for init_data.xml
2024-10-04 08:50:36 (69792): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-10-04 08:50:36 (69792): Guest Log: [INFO] Detected branch: prod
2024-10-04 08:50:37 (69792): Guest Log: This is the prod version of the ATLAS job wrapper
2024-10-04 08:50:37 (69792): Guest Log: Copying input files
2024-10-04 08:50:38 (69792): Guest Log: 00:00:10.006068 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 589 037 432 000ns (GuestNow=1 728 028 238 676 483 000 ns GuestLast=1 728 031 827 713 915 000 ns fSetTimeLastLoop=true )
2024-10-04 08:50:43 (69792): Guest Log: Copied input files into RunAtlas.
2024-10-04 08:50:43 (69792): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-10-04 08:50:43 (69792): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-10-04 08:50:43 (69792): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-10-04 08:50:43 (69792): Guest Log: Further information can be found at the LHC@home message board.
2024-10-04 08:50:52 (69792): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-10-04 08:50:53 (69792): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-10-04 08:50:53 (69792): Guest Log: 2.6.3.0 1561 0 32168 137961 4 1 3117399 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-10-04 08:50:54 (69792): Guest Log: copied the webapp to /var/www
2024-10-04 08:50:54 (69792): Guest Log: ATHENA_PROC_NUMBER=3
2024-10-04 08:50:54 (69792): Guest Log: ATHENA_CORE_NUMBER=3
2024-10-04 08:50:54 (69792): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-10-04 08:50:54 (69792): Guest Log:  *** Starting ATLAS job. (PandaID=6356126736 taskID=41481139) ***
2024-10-04 10:34:03 (69792): Status Report: Elapsed Time: '6000.696203'
2024-10-04 10:34:03 (69792): Status Report: CPU Time: '5778.281250'
2024-10-04 12:18:31 (69792): Status Report: Elapsed Time: '12001.003941'
2024-10-04 12:18:31 (69792): Status Report: CPU Time: '12985.281250'
2024-10-04 14:03:04 (69792): Status Report: Elapsed Time: '18001.416342'
2024-10-04 14:03:04 (69792): Status Report: CPU Time: '20369.812500'
2024-10-04 15:47:48 (69792): Status Report: Elapsed Time: '24001.885555'
2024-10-04 15:47:48 (69792): Status Report: CPU Time: '27400.109375'
2024-10-04 17:32:06 (69792): Status Report: Elapsed Time: '30002.816525'
2024-10-04 17:32:06 (69792): Status Report: CPU Time: '34478.140625'
2024-10-04 19:16:18 (69792): Status Report: Elapsed Time: '36003.602028'
2024-10-04 19:16:18 (69792): Status Report: CPU Time: '41572.281250'
2024-10-04 21:00:34 (69792): Status Report: Elapsed Time: '42003.806690'
2024-10-04 21:00:34 (69792): Status Report: CPU Time: '48634.734375'
2024-10-04 22:44:56 (69792): Status Report: Elapsed Time: '48004.503319'
2024-10-04 22:44:56 (69792): Status Report: CPU Time: '55755.781250'
2024-10-05 00:29:33 (69792): Status Report: Elapsed Time: '54004.724747'
2024-10-05 00:29:33 (69792): Status Report: CPU Time: '62765.421875'
2024-10-05 00:35:43 (69792): Guest Log:  *** Job finished ***
2024-10-05 00:35:43 (69792): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-10-05 00:35:43 (69792): Guest Log: 2024-10-04 23:35:27,939 | INFO     | [data] queue_monitor thread has finished
2024-10-05 00:35:43 (69792): Guest Log: 2024-10-04 23:35:34,199 | INFO     | job.realtimelogging is not enabled
2024-10-05 00:35:43 (69792): Guest Log: 2024-10-04 23:35:35,200 | INFO     | [payload] run_realtimelog thread has finished
2024-10-05 00:35:43 (69792): Guest Log: 2024-10-04 23:35:36,616 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140377052653376)>', '<ExcThread(monitor, started 140376040011520)>']
2024-10-05 00:35:43 (69792): Guest Log: 2024-10-04 23:35:37,517 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-10-05 00:35:43 (69792): Guest Log: 2024-10-04 23:35:37,517 | INFO     | [monitor] control thread has ended
2024-10-05 00:35:43 (69792): Guest Log: 2024-10-04 23:35:41,618 | INFO     | all workflow threads have been joined
2024-10-05 00:35:43 (69792): Guest Log: 2024-10-04 23:35:41,618 | INFO     | end of generic workflow (traces error code: 0)
2024-10-05 00:35:43 (69792): Guest Log: 2024-10-04 23:35:41,619 | INFO     | traces error code: 0
2024-10-05 00:35:43 (69792): Guest Log: 2024-10-04 23:35:41,619 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-10-05 00:35:43 (69792): Guest Log: 2024-10-04 23:35:41,736 [wrapper] ==== pilot stdout END ====
2024-10-05 00:35:43 (69792): Guest Log: 2024-10-04 23:35:41,744 [wrapper] ==== wrapper stdout RESUME ====
2024-10-05 00:35:43 (69792): Guest Log: 2024-10-04 23:35:41,751 [wrapper] pilotpid: 5900
2024-10-05 00:35:43 (69792): Guest Log: 2024-10-04 23:35:41,758 [wrapper] Pilot exit status: 0
2024-10-05 00:35:43 (69792): Guest Log: 2024-10-04 23:35:41,858 [wrapper] pandaids: 6356126736
2024-10-05 00:35:43 (69792): Guest Log: 2024-10-04 23:35:41,897 [wrapper] cleanup supervisor_pilot 14407 5901
2024-10-05 00:35:43 (69792): Guest Log: 2024-10-04 23:35:41,905 [wrapper] Test setup, not cleaning
2024-10-05 00:35:43 (69792): Guest Log: 2024-10-04 23:35:41,911 [wrapper] ==== wrapper stdout END ====
2024-10-05 00:35:43 (69792): Guest Log: 2024-10-04 23:35:41,919 [wrapper] ==== wrapper stderr END ====
2024-10-05 00:35:43 (69792): Guest Log: 2024-10-04 23:35:41,933 [wrapper] apfmon messages muted
2024-10-05 00:35:43 (69792): Guest Log:  *** Error codes and diagnostics ***
2024-10-05 00:35:43 (69792): Guest Log:     "exeErrorCode": 0,
2024-10-05 00:35:43 (69792): Guest Log:     "exeErrorDiag": "",
2024-10-05 00:35:43 (69792): Guest Log:     "pilotErrorCode": 0,
2024-10-05 00:35:43 (69792): Guest Log:     "pilotErrorDiag": "",
2024-10-05 00:35:43 (69792): Guest Log:  *** Listing of results directory ***
2024-10-05 00:35:43 (69792): Guest Log: total 233832
2024-10-05 00:35:43 (69792): Guest Log: -rw-r--r--. 1 atlas atlas    484599 Oct  4 05:25 pilot3.tar.gz
2024-10-05 00:35:43 (69792): Guest Log: -rw-r--r--. 1 atlas atlas      5653 Oct  4 05:35 queuedata.json
2024-10-05 00:35:43 (69792): Guest Log: -rwx------. 1 atlas atlas     33814 Oct  4 05:37 runpilot2-wrapper.sh
2024-10-05 00:35:43 (69792): Guest Log: -rwxr-xr-x. 1 atlas atlas      9238 Oct  4 07:50 init_data.xml
2024-10-05 00:35:43 (69792): Guest Log: -rwxr-xr-x. 1 atlas atlas    498165 Oct  4 07:50 input.tar.gz
2024-10-05 00:35:43 (69792): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 Oct  4 07:50 start_atlas.sh
2024-10-05 00:35:43 (69792): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct  4 07:50 EVNT.41481137._000020.pool.root.1 -> /data/./ATLAS.root_0
2024-10-05 00:35:43 (69792): Guest Log: -rw-r--r--. 1 atlas atlas      2532 Oct  4 07:50 pandaJob.out
2024-10-05 00:35:43 (69792): Guest Log: -rw-------. 1 atlas atlas       424 Oct  4 07:50 setup.sh.local
2024-10-05 00:35:43 (69792): Guest Log: -rw-------. 1 atlas atlas   1024512 Oct  4 07:51 agis_schedconf.cvmfs.json
2024-10-05 00:35:43 (69792): Guest Log: drwx------. 4 atlas atlas      4096 Oct  4 07:51 pilot3
2024-10-05 00:35:43 (69792): Guest Log: -rw-------. 1 atlas atlas 222611688 Oct  4 23:34 HITS.41481139._004091.pool.root.1
2024-10-05 00:35:43 (69792): Guest Log: -rw-------. 1 atlas atlas        95 Oct  4 23:34 pilot_heartbeat.json
2024-10-05 00:35:43 (69792): Guest Log: -rw-------. 1 atlas atlas      1029 Oct  4 23:34 memory_monitor_summary.json
2024-10-05 00:35:43 (69792): Guest Log: -rw-------. 1 atlas atlas   1615815 Oct  4 23:35 agis_ddmendpoints.agis.ALL.json
2024-10-05 00:35:43 (69792): Guest Log: -rw-------. 1 atlas atlas    739620 Oct  4 23:35 log.41481139._004091.job.log.tgz.1
2024-10-05 00:35:43 (69792): Guest Log: -rw-------. 1 atlas atlas      7753 Oct  4 23:35 heartbeat.json
2024-10-05 00:35:43 (69792): Guest Log: -rw-------. 1 atlas atlas      4652 Oct  4 23:35 pilotlog.txt
2024-10-05 00:35:43 (69792): Guest Log: -rw-------. 1 atlas atlas   5777721 Oct  4 23:35 log.41481139._004091.job.log.1
2024-10-05 00:35:43 (69792): Guest Log: -rw-------. 1 atlas atlas       357 Oct  4 23:35 output.list
2024-10-05 00:35:43 (69792): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct  4 23:35 runtime_log
2024-10-05 00:35:43 (69792): Guest Log: -rw-------. 1 atlas atlas   6533120 Oct  4 23:35 result.tar.gz
2024-10-05 00:35:43 (69792): Guest Log: -rw-r--r--. 1 atlas atlas     10913 Oct  4 23:35 runtime_log.err
2024-10-05 00:35:43 (69792): Guest Log: -rw-------. 1 atlas atlas       645 Oct  4 23:35 3IPKDmUBqG6n9Rq4apOajLDm4fhM0noT9bVorHsSDmXXdKDm7shHIm.diag
2024-10-05 00:35:43 (69792): Guest Log: Looking for outputfile HITS.41481139._004091.pool.root.1
2024-10-05 00:35:43 (69792): Guest Log: HITS file was successfully produced
2024-10-05 00:35:43 (69792): Guest Log: -rw-------. 1 atlas atlas 222611688 Oct  4 23:34 /home/atlas/RunAtlas/HITS.41481139._004091.pool.root.1
2024-10-05 00:35:45 (69792): Guest Log: Successfully finished the ATLAS job!
2024-10-05 00:35:45 (69792): Guest Log: Copying the results back to the shared directory!
2024-10-05 00:35:45 (69792): Guest Log:  *** Contents of shared directory: ***
2024-10-05 00:35:45 (69792): Guest Log: total 797336
2024-10-05 00:35:45 (69792): Guest Log: -rwxrwxrwx. 1 root root 586789182 Oct  4 07:49 ATLAS.root_0
2024-10-05 00:35:45 (69792): Guest Log: -rwxrwxrwx. 1 root root 222611688 Oct  4 23:35 HITS.pool.root.1
2024-10-05 00:35:45 (69792): Guest Log: -rwxrwxrwx. 1 root root      9238 Oct  4 07:49 init_data.xml
2024-10-05 00:35:45 (69792): Guest Log: -rwxrwxrwx. 1 root root    498165 Oct  4 07:48 input.tar.gz
2024-10-05 00:35:45 (69792): Guest Log: -rwxrwxrwx. 1 root root   6533120 Oct  4 23:35 result.tar.gz
2024-10-05 00:35:45 (69792): Guest Log: -rwxrwxrwx. 1 root root     17537 Oct  4 07:48 start_atlas.sh
2024-10-05 00:35:45 (69792): Guest Log:  *** Success! Shutting down the machine. ***
2024-10-05 00:35:45 (69792): VM Completion File Detected.
2024-10-05 00:35:45 (69792): Powering off VM.
2024-10-05 00:35:47 (69792): Successfully stopped VM.
2024-10-05 00:35:47 (69792): Deregistering VM. (boinc_da682e82a8e477f1, slot#3)
2024-10-05 00:35:47 (69792): Removing network bandwidth throttle group from VM.
2024-10-05 00:35:47 (69792): Removing VM from VirtualBox.
00:35:52 (69792): called boinc_finish(0)

</stderr_txt>
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