Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2024-10-04 09:08:50 (29684): Detected: vboxwrapper 26206
2024-10-04 09:08:50 (29684): Detected: BOINC client v8.0.2
2024-10-04 09:08:51 (29684): Detected: VirtualBox VboxManage Interface (Version: 7.0.18)
2024-10-04 09:08:51 (29684): Successfully copied 'init_data.xml' to the shared directory.
2024-10-04 09:08:51 (29684): Create VM. (boinc_722e4ec6cdd774ab, slot#16)
2024-10-04 09:08:52 (29684): Setting Memory Size for VM. (4800MB)
2024-10-04 09:08:52 (29684): Setting CPU Count for VM. (8)
2024-10-04 09:08:53 (29684): Setting Chipset Options for VM.
2024-10-04 09:08:53 (29684): Setting Graphics Controller Options for VM.
2024-10-04 09:08:53 (29684): Setting Boot Options for VM.
2024-10-04 09:08:53 (29684): Setting Network Configuration for NAT.
2024-10-04 09:08:54 (29684): Enabling VM Network Access.
2024-10-04 09:08:54 (29684): Disabling USB Support for VM.
2024-10-04 09:08:54 (29684): Disabling COM Port Support for VM.
2024-10-04 09:08:54 (29684): Disabling LPT Port Support for VM.
2024-10-04 09:08:55 (29684): Disabling Audio Support for VM.
2024-10-04 09:08:55 (29684): Disabling Clipboard Support for VM.
2024-10-04 09:08:55 (29684): Disabling Drag and Drop Support for VM.
2024-10-04 09:08:55 (29684): Adding storage controller(s) to VM.
2024-10-04 09:08:56 (29684): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-10-04 09:08:56 (29684): Adding VirtualBox Guest Additions to VM.
2024-10-04 09:08:56 (29684): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-10-04 09:08:57 (29684): forwarding host port 60143 to guest port 80
2024-10-04 09:08:57 (29684): Enabling remote desktop for VM.
2024-10-04 09:08:57 (29684): Required extension pack not installed, remote desktop not enabled.
2024-10-04 09:08:57 (29684): Enabling shared directory for VM.
2024-10-04 09:08:58 (29684): Starting VM using VBoxManage interface. (boinc_722e4ec6cdd774ab, slot#16)
2024-10-04 09:09:07 (29684): Successfully started VM. (PID = '32604')
2024-10-04 09:09:07 (29684): Reporting VM Process ID to BOINC.
2024-10-04 09:09:07 (29684): Guest Log: BIOS: VirtualBox 7.0.18
2024-10-04 09:09:07 (29684): Guest Log: CPUID EDX: 0x178bfbff
2024-10-04 09:09:07 (29684): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-10-04 09:09:07 (29684): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-10-04 09:09:07 (29684): VM state change detected. (old = 'poweredoff', new = 'running')
2024-10-04 09:09:07 (29684): Detected: Web Application Enabled (http://localhost:60143)
2024-10-04 09:09:07 (29684): Preference change detected
2024-10-04 09:09:07 (29684): Setting CPU throttle for VM. (100%)
2024-10-04 09:09:07 (29684): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 900 seconds))
2024-10-04 09:09:09 (29684): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-10-04 09:09:09 (29684): Guest Log: BIOS: Booting from Hard Disk...
2024-10-04 09:09:13 (29684): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-10-04 09:09:13 (29684): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-10-04 09:09:13 (29684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-10-04 09:09:13 (29684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-10-04 09:09:13 (29684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-10-04 09:09:13 (29684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-10-04 09:09:13 (29684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-10-04 09:09:13 (29684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-10-04 09:09:13 (29684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-10-04 09:09:13 (29684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-10-04 09:09:13 (29684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-10-04 09:09:13 (29684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-10-04 09:09:13 (29684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-10-04 09:09:13 (29684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-10-04 09:09:13 (29684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-10-04 09:09:13 (29684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-10-04 09:09:13 (29684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-10-04 09:09:13 (29684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-10-04 09:09:13 (29684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-10-04 09:09:13 (29684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-10-04 09:09:13 (29684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-10-04 09:09:13 (29684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-10-04 09:09:13 (29684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-10-04 09:09:13 (29684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-10-04 09:09:13 (29684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-10-04 09:09:13 (29684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-10-04 09:09:13 (29684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-10-04 09:09:13 (29684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-10-04 09:09:13 (29684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-10-04 09:09:13 (29684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-10-04 09:09:13 (29684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-10-04 09:09:13 (29684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-10-04 09:09:24 (29684): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-10-04 09:09:24 (29684): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-10-04 09:09:40 (29684): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-10-04 09:09:40 (29684): Guest Log: 00:00:00.000312 main     Log opened 2024-10-04T09:09:38.123036000Z
2024-10-04 09:09:40 (29684): Guest Log: 00:00:00.000552 main     OS Product: Linux
2024-10-04 09:09:40 (29684): Guest Log: 00:00:00.000604 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-10-04 09:09:40 (29684): Guest Log: 00:00:00.000667 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-10-04 09:09:40 (29684): Guest Log: 00:00:00.000733 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-10-04 09:09:40 (29684): Guest Log: 00:00:00.000735 main     Process ID: 1368
2024-10-04 09:09:40 (29684): Guest Log: 00:00:00.000736 main     Package type: LINUX_64BITS_GENERIC
2024-10-04 09:09:40 (29684): Guest Log: 00:00:00.007005 main     5.2.32 r132073 started. Verbose level = 0
2024-10-04 09:09:40 (29684): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-10-04 09:09:40 (29684): Guest Log: [INFO] Mounting shared directory
2024-10-04 09:09:40 (29684): Guest Log: [INFO] Checking for init_data.xml
2024-10-04 09:09:47 (29684): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-10-04 09:09:47 (29684): Guest Log: [INFO] Detected branch: prod
2024-10-04 09:09:47 (29684): Guest Log: This is the prod version of the ATLAS job wrapper
2024-10-04 09:09:47 (29684): Guest Log: Copying input files
2024-10-04 09:09:50 (29684): Guest Log: 00:00:10.044129 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 450 656 000ns (GuestNow=1 728 025 789 710 064 000 ns GuestLast=1 728 032 978 160 720 000 ns fSetTimeLastLoop=true )
2024-10-04 09:09:56 (29684): Guest Log: Copied input files into RunAtlas.
2024-10-04 09:09:57 (29684): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-10-04 09:09:57 (29684): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-10-04 09:09:57 (29684): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-10-04 09:09:57 (29684): Guest Log: Further information can be found at the LHC@home message board.
2024-10-04 09:10:07 (29684): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-10-04 09:10:08 (29684): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-10-04 09:10:08 (29684): Guest Log: 2.6.3.0 1645 0 32228 137960 4 1 3117399 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-10-04 09:10:10 (29684): Guest Log: copied the webapp to /var/www
2024-10-04 09:10:10 (29684): Guest Log: ATHENA_PROC_NUMBER=8
2024-10-04 09:10:10 (29684): Guest Log: ATHENA_CORE_NUMBER=8
2024-10-04 09:10:10 (29684): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-10-04 09:10:10 (29684): Guest Log:  *** Starting ATLAS job. (PandaID=6356024195 taskID=41481139) ***
2024-10-04 10:49:16 (29684): Status Report: Elapsed Time: '6000.000000'
2024-10-04 10:49:16 (29684): Status Report: CPU Time: '26286.250000'
2024-10-04 11:50:00 (29684): VM state change detected. (old = 'running', new = 'paused')
2024-10-04 12:16:06 (29684): VM state change detected. (old = 'paused', new = 'running')
2024-10-04 12:55:33 (29684): Status Report: Elapsed Time: '12000.000000'
2024-10-04 12:55:33 (29684): Status Report: CPU Time: '62365.734375'
2024-10-04 14:04:52 (29684): VM state change detected. (old = 'running', new = 'paused')
2024-10-04 18:29:55 (29684): Guest Log: 04:29:06.402374 timesync vgsvcTimeSyncWorker: Radical host time change: 15 912 636 000 000ns (HostNow=1 728 059 394 993 000 000 ns HostLast=1 728 043 482 357 000 000 ns)
2024-10-04 18:29:55 (29684): VM state change detected. (old = 'paused', new = 'running')
2024-10-04 18:30:05 (29684): Guest Log: 04:29:16.414414 timesync vgsvcTimeSyncWorker: Radical guest time change: 15 912 650 865 000ns (GuestNow=1 728 059 405 008 870 000 ns GuestLast=1 728 043 492 358 005 000 ns fSetTimeLastLoop=true )
2024-10-04 19:00:44 (29684): Status Report: Elapsed Time: '18000.000000'
2024-10-04 19:00:44 (29684): Status Report: CPU Time: '102831.156250'
2024-10-04 20:40:51 (29684): Status Report: Elapsed Time: '24000.000000'
2024-10-04 20:40:51 (29684): Status Report: CPU Time: '146250.468750'
2024-10-04 22:20:58 (29684): Status Report: Elapsed Time: '30000.000000'
2024-10-04 22:20:58 (29684): Status Report: CPU Time: '177285.421875'
2024-10-04 23:33:53 (29684): Guest Log:  *** Job finished ***
2024-10-04 23:33:53 (29684): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-10-04 23:33:53 (29684): Guest Log: 2024-10-04 21:33:39,966 | INFO     | [data] queue_monitor thread has finished
2024-10-04 23:33:53 (29684): Guest Log: 2024-10-04 21:33:43,634 | INFO     | job.realtimelogging is not enabled
2024-10-04 23:33:53 (29684): Guest Log: 2024-10-04 21:33:44,637 | INFO     | [payload] run_realtimelog thread has finished
2024-10-04 23:33:53 (29684): Guest Log: 2024-10-04 21:33:46,013 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140692298491712)>', '<ExcThread(monitor, started 140691107735296)>']
2024-10-04 23:33:53 (29684): Guest Log: 2024-10-04 21:33:46,506 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-10-04 23:33:53 (29684): Guest Log: 2024-10-04 21:33:46,506 | INFO     | [monitor] control thread has ended
2024-10-04 23:33:53 (29684): Guest Log: 2024-10-04 21:33:51,015 | INFO     | all workflow threads have been joined
2024-10-04 23:33:53 (29684): Guest Log: 2024-10-04 21:33:51,016 | INFO     | end of generic workflow (traces error code: 0)
2024-10-04 23:33:53 (29684): Guest Log: 2024-10-04 21:33:51,016 | INFO     | traces error code: 0
2024-10-04 23:33:53 (29684): Guest Log: 2024-10-04 21:33:51,017 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-10-04 23:33:53 (29684): Guest Log: 2024-10-04 21:33:51,165 [wrapper] ==== pilot stdout END ====
2024-10-04 23:33:53 (29684): Guest Log: 2024-10-04 21:33:51,175 [wrapper] ==== wrapper stdout RESUME ====
2024-10-04 23:33:53 (29684): Guest Log: 2024-10-04 21:33:51,185 [wrapper] pilotpid: 6041
2024-10-04 23:33:53 (29684): Guest Log: 2024-10-04 21:33:51,195 [wrapper] Pilot exit status: 0
2024-10-04 23:33:53 (29684): Guest Log: 2024-10-04 21:33:51,306 [wrapper] pandaids: 6356024195
2024-10-04 23:33:53 (29684): Guest Log: 2024-10-04 21:33:51,381 [wrapper] cleanup supervisor_pilot 14294 6042
2024-10-04 23:33:53 (29684): Guest Log: 2024-10-04 21:33:51,390 [wrapper] Test setup, not cleaning
2024-10-04 23:33:53 (29684): Guest Log: 2024-10-04 21:33:51,400 [wrapper] ==== wrapper stdout END ====
2024-10-04 23:33:53 (29684): Guest Log: 2024-10-04 21:33:51,410 [wrapper] ==== wrapper stderr END ====
2024-10-04 23:33:53 (29684): Guest Log: 2024-10-04 21:33:51,430 [wrapper] apfmon messages muted
2024-10-04 23:33:53 (29684): Guest Log:  *** Error codes and diagnostics ***
2024-10-04 23:33:53 (29684): Guest Log:     "exeErrorCode": 0,
2024-10-04 23:33:53 (29684): Guest Log:     "exeErrorDiag": "",
2024-10-04 23:33:53 (29684): Guest Log:     "pilotErrorCode": 0,
2024-10-04 23:33:53 (29684): Guest Log:     "pilotErrorDiag": "",
2024-10-04 23:33:53 (29684): Guest Log:  *** Listing of results directory ***
2024-10-04 23:33:53 (29684): Guest Log: total 229988
2024-10-04 23:33:53 (29684): Guest Log: -rw-r--r--. 1 atlas atlas    484599 Oct  4 02:49 pilot3.tar.gz
2024-10-04 23:33:53 (29684): Guest Log: -rw-r--r--. 1 atlas atlas      5653 Oct  4 03:02 queuedata.json
2024-10-04 23:33:53 (29684): Guest Log: -rwx------. 1 atlas atlas     33814 Oct  4 03:02 runpilot2-wrapper.sh
2024-10-04 23:33:53 (29684): Guest Log: -rwxr-xr-x. 1 atlas atlas      9143 Oct  4 07:09 init_data.xml
2024-10-04 23:33:53 (29684): Guest Log: -rwxr-xr-x. 1 atlas atlas    498168 Oct  4 07:09 input.tar.gz
2024-10-04 23:33:53 (29684): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 Oct  4 07:09 start_atlas.sh
2024-10-04 23:33:53 (29684): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct  4 07:09 EVNT.41481137._000031.pool.root.1 -> /data/./ATLAS.root_0
2024-10-04 23:33:53 (29684): Guest Log: -rw-r--r--. 1 atlas atlas      2533 Oct  4 07:10 pandaJob.out
2024-10-04 23:33:53 (29684): Guest Log: -rw-------. 1 atlas atlas       424 Oct  4 07:10 setup.sh.local
2024-10-04 23:33:53 (29684): Guest Log: -rw-------. 1 atlas atlas   1024510 Oct  4 07:11 agis_schedconf.cvmfs.json
2024-10-04 23:33:53 (29684): Guest Log: drwx------. 4 atlas atlas      4096 Oct  4 07:11 pilot3
2024-10-04 23:33:53 (29684): Guest Log: -rw-------. 1 atlas atlas 224046474 Oct  4 21:32 HITS.41481139._003934.pool.root.1
2024-10-04 23:33:53 (29684): Guest Log: -rw-------. 1 atlas atlas      1035 Oct  4 21:33 memory_monitor_summary.json
2024-10-04 23:33:53 (29684): Guest Log: -rw-------. 1 atlas atlas   1615815 Oct  4 21:33 agis_ddmendpoints.agis.ALL.json
2024-10-04 23:33:53 (29684): Guest Log: -rw-------. 1 atlas atlas    595188 Oct  4 21:33 log.41481139._003934.job.log.tgz.1
2024-10-04 23:33:53 (29684): Guest Log: -rw-------. 1 atlas atlas        98 Oct  4 21:33 pilot_heartbeat.json
2024-10-04 23:33:53 (29684): Guest Log: -rw-------. 1 atlas atlas      7749 Oct  4 21:33 heartbeat.json
2024-10-04 23:33:53 (29684): Guest Log: -rw-------. 1 atlas atlas      4343 Oct  4 21:33 pilotlog.txt
2024-10-04 23:33:53 (29684): Guest Log: -rw-------. 1 atlas atlas   3232943 Oct  4 21:33 log.41481139._003934.job.log.1
2024-10-04 23:33:53 (29684): Guest Log: -rw-------. 1 atlas atlas       357 Oct  4 21:33 output.list
2024-10-04 23:33:53 (29684): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct  4 21:33 runtime_log
2024-10-04 23:33:53 (29684): Guest Log: -rw-------. 1 atlas atlas   3850240 Oct  4 21:33 result.tar.gz
2024-10-04 23:33:53 (29684): Guest Log: -rw-------. 1 atlas atlas       650 Oct  4 21:33 ShmKDmclnG6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmPWrKDm78vV9m.diag
2024-10-04 23:33:53 (29684): Guest Log: -rw-r--r--. 1 atlas atlas     10928 Oct  4 21:33 runtime_log.err
2024-10-04 23:33:53 (29684): Guest Log: Looking for outputfile HITS.41481139._003934.pool.root.1
2024-10-04 23:33:53 (29684): Guest Log: HITS file was successfully produced
2024-10-04 23:33:53 (29684): Guest Log: -rw-------. 1 atlas atlas 224046474 Oct  4 21:32 /home/atlas/RunAtlas/HITS.41481139._003934.pool.root.1
2024-10-04 23:33:55 (29684): Guest Log: Successfully finished the ATLAS job!
2024-10-04 23:33:55 (29684): Guest Log: Copying the results back to the shared directory!
2024-10-04 23:33:55 (29684): Guest Log:  *** Contents of shared directory: ***
2024-10-04 23:33:55 (29684): Guest Log: total 809080
2024-10-04 23:33:55 (29684): Guest Log: -rwxrwxrwx. 1 root root 600067584 Oct  4 07:08 ATLAS.root_0
2024-10-04 23:33:55 (29684): Guest Log: -rwxrwxrwx. 1 root root 224046474 Oct  4 21:33 HITS.pool.root.1
2024-10-04 23:33:55 (29684): Guest Log: -rwxrwxrwx. 1 root root      9143 Oct  4 07:08 init_data.xml
2024-10-04 23:33:55 (29684): Guest Log: -rwxrwxrwx. 1 root root    498168 Oct  4 05:16 input.tar.gz
2024-10-04 23:33:55 (29684): Guest Log: -rwxrwxrwx. 1 root root   3850240 Oct  4 21:33 result.tar.gz
2024-10-04 23:33:55 (29684): Guest Log: -rwxrwxrwx. 1 root root     17537 Oct  4 05:16 start_atlas.sh
2024-10-04 23:33:55 (29684): Guest Log:  *** Success! Shutting down the machine. ***
2024-10-04 23:33:55 (29684): VM Completion File Detected.
2024-10-04 23:33:55 (29684): Powering off VM.
2024-10-04 23:33:56 (29684): Successfully stopped VM.
2024-10-04 23:33:56 (29684): Deregistering VM. (boinc_722e4ec6cdd774ab, slot#16)
2024-10-04 23:33:56 (29684): Removing network bandwidth throttle group from VM.
2024-10-04 23:33:56 (29684): Removing VM from VirtualBox.
23:34:02 (29684): called boinc_finish(0)

</stderr_txt>
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