Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
2024-10-04 05:36:12 (5956): Detected: vboxwrapper 26206
2024-10-04 05:36:12 (5956): Detected: BOINC client v7.16.11
2024-10-04 05:36:13 (5956): Detected: VirtualBox VboxManage Interface (Version: 6.1.18)
2024-10-04 05:36:13 (5956): Successfully copied 'init_data.xml' to the shared directory.
2024-10-04 05:36:14 (5956): Create VM. (boinc_2ea543b319457e88, slot#11)
2024-10-04 05:36:14 (5956): Setting Memory Size for VM. (4800MB)
2024-10-04 05:36:15 (5956): Setting CPU Count for VM. (8)
2024-10-04 05:36:15 (5956): Setting Chipset Options for VM.
2024-10-04 05:36:15 (5956): Setting Graphics Controller Options for VM.
2024-10-04 05:36:15 (5956): Setting Boot Options for VM.
2024-10-04 05:36:16 (5956): Setting Network Configuration for NAT.
2024-10-04 05:36:16 (5956): Enabling VM Network Access.
2024-10-04 05:36:16 (5956): Disabling USB Support for VM.
2024-10-04 05:36:16 (5956): Disabling COM Port Support for VM.
2024-10-04 05:36:17 (5956): Disabling LPT Port Support for VM.
2024-10-04 05:36:17 (5956): Disabling Audio Support for VM.
2024-10-04 05:36:17 (5956): Disabling Clipboard Support for VM.
2024-10-04 05:36:17 (5956): Disabling Drag and Drop Support for VM.
2024-10-04 05:36:18 (5956): Adding storage controller(s) to VM.
2024-10-04 05:36:18 (5956): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-10-04 05:36:18 (5956): Adding VirtualBox Guest Additions to VM.
2024-10-04 05:36:19 (5956): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-10-04 05:36:19 (5956): forwarding host port 50831 to guest port 80
2024-10-04 05:36:19 (5956): Enabling remote desktop for VM.
2024-10-04 05:36:20 (5956): Enabling shared directory for VM.
2024-10-04 05:36:20 (5956): Starting VM using VBoxManage interface. (boinc_2ea543b319457e88, slot#11)
2024-10-04 05:36:24 (5956): Successfully started VM. (PID = '43908')
2024-10-04 05:36:24 (5956): Reporting VM Process ID to BOINC.
2024-10-04 05:36:24 (5956): Guest Log: BIOS: VirtualBox 6.1.18
2024-10-04 05:36:24 (5956): Guest Log: CPUID EDX: 0x178bfbff
2024-10-04 05:36:24 (5956): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-10-04 05:36:24 (5956): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-10-04 05:36:24 (5956): VM state change detected. (old = 'poweredoff', new = 'running')
2024-10-04 05:36:24 (5956): Detected: Web Application Enabled (http://localhost:50831)
2024-10-04 05:36:24 (5956): Detected: Remote Desktop Enabled (localhost:50832)
2024-10-04 05:36:24 (5956): Preference change detected
2024-10-04 05:36:24 (5956): Setting CPU throttle for VM. (40%)
2024-10-04 05:36:24 (5956): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-10-04 05:36:26 (5956): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-10-04 05:36:26 (5956): Guest Log: BIOS: Booting from Hard Disk...
2024-10-04 05:36:32 (5956): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-10-04 05:36:32 (5956): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-10-04 05:36:32 (5956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-10-04 05:36:32 (5956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-10-04 05:36:32 (5956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-10-04 05:36:32 (5956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-10-04 05:36:32 (5956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-10-04 05:36:32 (5956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-10-04 05:36:32 (5956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-10-04 05:36:32 (5956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-10-04 05:36:32 (5956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-10-04 05:36:32 (5956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-10-04 05:36:32 (5956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-10-04 05:36:32 (5956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-10-04 05:36:32 (5956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-10-04 05:36:32 (5956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-10-04 05:36:32 (5956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-10-04 05:36:32 (5956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-10-04 05:36:32 (5956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-10-04 05:36:32 (5956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-10-04 05:36:32 (5956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-10-04 05:36:32 (5956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-10-04 05:36:32 (5956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-10-04 05:36:32 (5956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-10-04 05:36:32 (5956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-10-04 05:36:32 (5956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-10-04 05:36:32 (5956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-10-04 05:36:32 (5956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-10-04 05:36:32 (5956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-10-04 05:36:32 (5956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-10-04 05:36:32 (5956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-10-04 05:36:32 (5956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-10-04 05:36:42 (5956): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-10-04 05:36:42 (5956): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-10-04 05:36:51 (5956): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-10-04 05:36:51 (5956): Guest Log: 00:00:00.000103 main     Log opened 2024-10-04T05:36:49.676842000Z
2024-10-04 05:36:51 (5956): Guest Log: 00:00:00.000165 main     OS Product: Linux
2024-10-04 05:36:51 (5956): Guest Log: 00:00:00.000191 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-10-04 05:36:51 (5956): Guest Log: 00:00:00.000215 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-10-04 05:36:51 (5956): Guest Log: 00:00:00.000237 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-10-04 05:36:51 (5956): Guest Log: 00:00:00.000238 main     Process ID: 1364
2024-10-04 05:36:51 (5956): Guest Log: 00:00:00.000238 main     Package type: LINUX_64BITS_GENERIC
2024-10-04 05:36:51 (5956): Guest Log: 00:00:00.000920 main     5.2.32 r132073 started. Verbose level = 0
2024-10-04 05:36:51 (5956): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-10-04 05:36:51 (5956): Guest Log: [INFO] Mounting shared directory
2024-10-04 05:36:51 (5956): Guest Log: [INFO] Checking for init_data.xml
2024-10-04 05:36:58 (5956): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-10-04 05:36:58 (5956): Guest Log: [INFO] Detected branch: prod
2024-10-04 05:36:58 (5956): Guest Log: This is the prod version of the ATLAS job wrapper
2024-10-04 05:36:58 (5956): Guest Log: Copying input files
2024-10-04 05:37:01 (5956): Guest Log: 00:00:10.016139 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 575 654 000ns (GuestNow=1 728 013 021 103 090 000 ns GuestLast=1 728 020 209 678 744 000 ns fSetTimeLastLoop=true )
2024-10-04 05:37:06 (5956): Guest Log: Copied input files into RunAtlas.
2024-10-04 05:37:06 (5956): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-10-04 05:37:06 (5956): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-10-04 05:37:06 (5956): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-10-04 05:37:06 (5956): Guest Log: Further information can be found at the LHC@home message board.
2024-10-04 05:37:14 (5956): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-10-04 05:37:14 (5956): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-10-04 05:37:14 (5956): Guest Log: 2.6.3.0 1642 0 32264 137955 4 1 3117399 4096000 0 65024 0 0 n/a 1 4 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
2024-10-04 05:37:14 (5956): Guest Log: copied the webapp to /var/www
2024-10-04 05:37:14 (5956): Guest Log: ATHENA_PROC_NUMBER=8
2024-10-04 05:37:14 (5956): Guest Log: ATHENA_CORE_NUMBER=8
2024-10-04 05:37:14 (5956): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-10-04 05:37:14 (5956): Guest Log:  *** Starting ATLAS job. (PandaID=6355846573 taskID=41481181) ***
2024-10-04 07:16:29 (5956): Status Report: Elapsed Time: '6000.000000'
2024-10-04 07:16:29 (5956): Status Report: CPU Time: '17073.109375'
2024-10-04 07:50:00 (5956): VM state change detected. (old = 'running', new = 'paused')
2024-10-04 07:50:10 (5956): VM state change detected. (old = 'paused', new = 'running')
2024-10-04 07:55:50 (5956): VM state change detected. (old = 'running', new = 'paused')
2024-10-04 07:56:00 (5956): VM state change detected. (old = 'paused', new = 'running')
2024-10-04 08:01:51 (5956): VM state change detected. (old = 'running', new = 'paused')
2024-10-04 08:02:01 (5956): VM state change detected. (old = 'paused', new = 'running')
2024-10-04 08:57:06 (5956): Status Report: Elapsed Time: '12000.000000'
2024-10-04 08:57:06 (5956): Status Report: CPU Time: '38302.500000'
2024-10-04 09:43:12 (5956): Guest Log:  *** Job finished ***
2024-10-04 09:43:12 (5956): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-10-04 09:43:12 (5956): Guest Log: 2024-10-04 07:42:33,826 | INFO     | [data] copytool_out thread has finished
2024-10-04 09:43:12 (5956): Guest Log: 2024-10-04 07:42:34,785 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2024-10-04 09:43:12 (5956): Guest Log: 2024-10-04 07:42:38,844 | INFO     | [data] queue_monitor thread has finished
2024-10-04 09:43:12 (5956): Guest Log: 2024-10-04 07:42:40,218 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140431331129152)>', '<ExcThread(monitor, started 140430515623680)>']
2024-10-04 09:43:12 (5956): Guest Log: 2024-10-04 07:42:40,348 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-10-04 09:43:12 (5956): Guest Log: 2024-10-04 07:42:40,349 | INFO     | [monitor] control thread has ended
2024-10-04 09:43:12 (5956): Guest Log: 2024-10-04 07:42:45,224 | INFO     | all workflow threads have been joined
2024-10-04 09:43:12 (5956): Guest Log: 2024-10-04 07:42:45,224 | INFO     | end of generic workflow (traces error code: 0)
2024-10-04 09:43:12 (5956): Guest Log: 2024-10-04 07:42:45,224 | INFO     | traces error code: 0
2024-10-04 09:43:12 (5956): Guest Log: 2024-10-04 07:42:45,224 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-10-04 09:43:12 (5956): Guest Log: 2024-10-04 07:42:45,352 [wrapper] ==== pilot stdout END ====
2024-10-04 09:43:12 (5956): Guest Log: 2024-10-04 07:42:45,356 [wrapper] ==== wrapper stdout RESUME ====
2024-10-04 09:43:12 (5956): Guest Log: 2024-10-04 07:42:45,361 [wrapper] pilotpid: 6034
2024-10-04 09:43:12 (5956): Guest Log: 2024-10-04 07:42:45,366 [wrapper] Pilot exit status: 0
2024-10-04 09:43:12 (5956): Guest Log: 2024-10-04 07:42:45,486 [wrapper] pandaids: 6355846573
2024-10-04 09:43:12 (5956): Guest Log: 2024-10-04 07:42:45,511 [wrapper] cleanup supervisor_pilot  9677 6035
2024-10-04 09:43:12 (5956): Guest Log: 2024-10-04 07:42:45,515 [wrapper] Test setup, not cleaning
2024-10-04 09:43:12 (5956): Guest Log: 2024-10-04 07:42:45,519 [wrapper] ==== wrapper stdout END ====
2024-10-04 09:43:12 (5956): Guest Log: 2024-10-04 07:42:45,523 [wrapper] ==== wrapper stderr END ====
2024-10-04 09:43:12 (5956): Guest Log: 2024-10-04 07:42:45,549 [wrapper] apfmon messages muted
2024-10-04 09:43:12 (5956): Guest Log:  *** Error codes and diagnostics ***
2024-10-04 09:43:12 (5956): Guest Log:     "exeErrorCode": 0,
2024-10-04 09:43:12 (5956): Guest Log:     "exeErrorDiag": "",
2024-10-04 09:43:12 (5956): Guest Log:     "pilotErrorCode": 0,
2024-10-04 09:43:12 (5956): Guest Log:     "pilotErrorDiag": "",
2024-10-04 09:43:12 (5956): Guest Log:  *** Listing of results directory ***
2024-10-04 09:43:12 (5956): Guest Log: total 263468
2024-10-04 09:43:12 (5956): Guest Log: -rw-r--r--. 1 atlas atlas      5653 Oct  4 01:09 queuedata.json
2024-10-04 09:43:12 (5956): Guest Log: -rw-r--r--. 1 atlas atlas    484599 Oct  4 01:10 pilot3.tar.gz
2024-10-04 09:43:12 (5956): Guest Log: -rwx------. 1 atlas atlas     33814 Oct  4 01:11 runpilot2-wrapper.sh
2024-10-04 09:43:12 (5956): Guest Log: -rwxr-xr-x. 1 atlas atlas      8682 Oct  4 03:37 init_data.xml
2024-10-04 09:43:12 (5956): Guest Log: -rwxr-xr-x. 1 atlas atlas    498175 Oct  4 03:37 input.tar.gz
2024-10-04 09:43:12 (5956): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 Oct  4 03:37 start_atlas.sh
2024-10-04 09:43:12 (5956): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct  4 03:37 EVNT.41466530._000171.pool.root.1 -> /data/./ATLAS.root_0
2024-10-04 09:43:12 (5956): Guest Log: -rw-r--r--. 1 atlas atlas      2534 Oct  4 03:37 pandaJob.out
2024-10-04 09:43:12 (5956): Guest Log: -rw-------. 1 atlas atlas       424 Oct  4 03:37 setup.sh.local
2024-10-04 09:43:12 (5956): Guest Log: -rw-------. 1 atlas atlas   1024518 Oct  4 03:38 agis_schedconf.cvmfs.json
2024-10-04 09:43:12 (5956): Guest Log: drwx------. 4 atlas atlas      4096 Oct  4 03:38 pilot3
2024-10-04 09:43:12 (5956): Guest Log: -rw-------. 1 atlas atlas 264128349 Oct  4 07:41 HITS.41481181._013396.pool.root.1
2024-10-04 09:43:12 (5956): Guest Log: -rw-------. 1 atlas atlas        95 Oct  4 07:41 pilot_heartbeat.json
2024-10-04 09:43:12 (5956): Guest Log: -rw-------. 1 atlas atlas      1033 Oct  4 07:42 memory_monitor_summary.json
2024-10-04 09:43:12 (5956): Guest Log: -rw-------. 1 atlas atlas   1615815 Oct  4 07:42 agis_ddmendpoints.agis.ALL.json
2024-10-04 09:43:12 (5956): Guest Log: -rw-------. 1 atlas atlas    345761 Oct  4 07:42 log.41481181._013396.job.log.tgz.1
2024-10-04 09:43:12 (5956): Guest Log: -rw-------. 1 atlas atlas      7749 Oct  4 07:42 heartbeat.json
2024-10-04 09:43:12 (5956): Guest Log: -rw-------. 1 atlas atlas      4394 Oct  4 07:42 pilotlog.txt
2024-10-04 09:43:12 (5956): Guest Log: -rw-------. 1 atlas atlas    583280 Oct  4 07:42 log.41481181._013396.job.log.1
2024-10-04 09:43:12 (5956): Guest Log: -rw-------. 1 atlas atlas       357 Oct  4 07:42 output.list
2024-10-04 09:43:12 (5956): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct  4 07:42 runtime_log
2024-10-04 09:43:12 (5956): Guest Log: -rw-------. 1 atlas atlas    952320 Oct  4 07:42 result.tar.gz
2024-10-04 09:43:12 (5956): Guest Log: -rw-r--r--. 1 atlas atlas     10928 Oct  4 07:42 runtime_log.err
2024-10-04 09:43:12 (5956): Guest Log: -rw-------. 1 atlas atlas       647 Oct  4 07:42 2QgLDmE2lG6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmxJrKDm8NN2Yn.diag
2024-10-04 09:43:12 (5956): Guest Log: Looking for outputfile HITS.41481181._013396.pool.root.1
2024-10-04 09:43:12 (5956): Guest Log: HITS file was successfully produced
2024-10-04 09:43:12 (5956): Guest Log: -rw-------. 1 atlas atlas 264128349 Oct  4 07:41 /home/atlas/RunAtlas/HITS.41481181._013396.pool.root.1
2024-10-04 09:43:14 (5956): Guest Log: Successfully finished the ATLAS job!
2024-10-04 09:43:14 (5956): Guest Log: Copying the results back to the shared directory!
2024-10-04 09:43:14 (5956): Guest Log:  *** Contents of shared directory: ***
2024-10-04 09:43:14 (5956): Guest Log: total 883924
2024-10-04 09:43:14 (5956): Guest Log: -rwxrwxrwx. 1 root root 639516814 Oct  4 03:36 ATLAS.root_0
2024-10-04 09:43:14 (5956): Guest Log: -rwxrwxrwx. 1 root root 264128349 Oct  4  2024 HITS.pool.root.1
2024-10-04 09:43:14 (5956): Guest Log: -rwxrwxrwx. 1 root root      8682 Oct  4 03:36 init_data.xml
2024-10-04 09:43:14 (5956): Guest Log: -rwxrwxrwx. 1 root root    498175 Oct  4 03:35 input.tar.gz
2024-10-04 09:43:14 (5956): Guest Log: -rwxrwxrwx. 1 root root    952320 Oct  4  2024 result.tar.gz
2024-10-04 09:43:14 (5956): Guest Log: -rwxrwxrwx. 1 root root     17537 Oct  4 03:35 start_atlas.sh
2024-10-04 09:43:14 (5956): Guest Log:  *** Success! Shutting down the machine. ***
2024-10-04 09:43:14 (5956): VM Completion File Detected.
2024-10-04 09:43:14 (5956): Powering off VM.
2024-10-04 09:43:15 (5956): Successfully stopped VM.
2024-10-04 09:43:15 (5956): Deregistering VM. (boinc_2ea543b319457e88, slot#11)
2024-10-04 09:43:15 (5956): Removing network bandwidth throttle group from VM.
2024-10-04 09:43:16 (5956): Removing VM from VirtualBox.
09:43:21 (5956): called boinc_finish(0)

</stderr_txt>
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