Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2024-10-03 22:36:01 (3216): Detected: vboxwrapper 26206
2024-10-03 22:36:01 (3216): Detected: BOINC client v8.0.2
2024-10-03 22:36:02 (3216): Detected: VirtualBox VboxManage Interface (Version: 7.0.14)
2024-10-03 22:36:02 (3216): Successfully copied 'init_data.xml' to the shared directory.
2024-10-03 22:36:02 (3216): Create VM. (boinc_44a0a11400e35cb5, slot#1)
2024-10-03 22:36:03 (3216): Setting Memory Size for VM. (4400MB)
2024-10-03 22:36:03 (3216): Setting CPU Count for VM. (4)
2024-10-03 22:36:04 (3216): Setting Chipset Options for VM.
2024-10-03 22:36:04 (3216): Setting Graphics Controller Options for VM.
2024-10-03 22:36:04 (3216): Setting Boot Options for VM.
2024-10-03 22:36:04 (3216): Setting Network Configuration for NAT.
2024-10-03 22:36:05 (3216): Enabling VM Network Access.
2024-10-03 22:36:05 (3216): Disabling USB Support for VM.
2024-10-03 22:36:05 (3216): Disabling COM Port Support for VM.
2024-10-03 22:36:05 (3216): Disabling LPT Port Support for VM.
2024-10-03 22:36:06 (3216): Disabling Audio Support for VM.
2024-10-03 22:36:06 (3216): Disabling Clipboard Support for VM.
2024-10-03 22:36:06 (3216): Disabling Drag and Drop Support for VM.
2024-10-03 22:36:07 (3216): Adding storage controller(s) to VM.
2024-10-03 22:36:07 (3216): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-10-03 22:36:10 (3216): Adding VirtualBox Guest Additions to VM.
2024-10-03 22:36:10 (3216): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-10-03 22:36:10 (3216): forwarding host port 65449 to guest port 80
2024-10-03 22:36:10 (3216): Enabling remote desktop for VM.
2024-10-03 22:36:11 (3216): Required extension pack not installed, remote desktop not enabled.
2024-10-03 22:36:11 (3216): Enabling shared directory for VM.
2024-10-03 22:36:11 (3216): Starting VM using VBoxManage interface. (boinc_44a0a11400e35cb5, slot#1)
2024-10-03 22:36:18 (3216): Successfully started VM. (PID = '21000')
2024-10-03 22:36:18 (3216): Reporting VM Process ID to BOINC.
2024-10-03 22:36:18 (3216): Guest Log: BIOS: VirtualBox 7.0.14
2024-10-03 22:36:18 (3216): Guest Log: CPUID EDX: 0x178bfbff
2024-10-03 22:36:18 (3216): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-10-03 22:36:18 (3216): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-10-03 22:36:18 (3216): VM state change detected. (old = 'poweredoff', new = 'running')
2024-10-03 22:36:18 (3216): Detected: Web Application Enabled (http://localhost:65449)
2024-10-03 22:36:18 (3216): Preference change detected
2024-10-03 22:36:18 (3216): Setting CPU throttle for VM. (50%)
2024-10-03 22:36:18 (3216): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-10-03 22:36:20 (3216): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-10-03 22:36:20 (3216): Guest Log: BIOS: Booting from Hard Disk...
2024-10-03 22:36:23 (3216): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-10-03 22:36:23 (3216): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-10-03 22:36:23 (3216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-10-03 22:36:23 (3216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-10-03 22:36:23 (3216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-10-03 22:36:23 (3216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-10-03 22:36:23 (3216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-10-03 22:36:23 (3216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-10-03 22:36:23 (3216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-10-03 22:36:23 (3216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-10-03 22:36:23 (3216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-10-03 22:36:23 (3216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-10-03 22:36:23 (3216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-10-03 22:36:23 (3216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-10-03 22:36:23 (3216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-10-03 22:36:23 (3216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-10-03 22:36:23 (3216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-10-03 22:36:23 (3216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-10-03 22:36:23 (3216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-10-03 22:36:23 (3216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-10-03 22:36:23 (3216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-10-03 22:36:23 (3216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-10-03 22:36:23 (3216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-10-03 22:36:23 (3216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-10-03 22:36:23 (3216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-10-03 22:36:23 (3216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-10-03 22:36:23 (3216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-10-03 22:36:23 (3216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-10-03 22:36:23 (3216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-10-03 22:36:23 (3216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-10-03 22:36:23 (3216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-10-03 22:36:23 (3216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-10-03 22:36:31 (3216): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-10-03 22:36:31 (3216): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-10-03 22:36:39 (3216): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-10-03 22:36:39 (3216): Guest Log: 00:00:00.000135 main     Log opened 2024-10-03T22:36:37.236861000Z
2024-10-03 22:36:39 (3216): Guest Log: 00:00:00.000261 main     OS Product: Linux
2024-10-03 22:36:39 (3216): Guest Log: 00:00:00.000305 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-10-03 22:36:39 (3216): Guest Log: 00:00:00.000343 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-10-03 22:36:39 (3216): Guest Log: 00:00:00.000380 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-10-03 22:36:39 (3216): Guest Log: 00:00:00.000381 main     Process ID: 1300
2024-10-03 22:36:39 (3216): Guest Log: 00:00:00.000382 main     Package type: LINUX_64BITS_GENERIC
2024-10-03 22:36:39 (3216): Guest Log: 00:00:00.002562 main     5.2.32 r132073 started. Verbose level = 0
2024-10-03 22:36:39 (3216): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-10-03 22:36:39 (3216): Guest Log: [INFO] Mounting shared directory
2024-10-03 22:36:39 (3216): Guest Log: [INFO] Checking for init_data.xml
2024-10-03 22:36:49 (3216): Guest Log: 00:00:10.266351 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 012 132 232 000ns (GuestNow=1 728 013 009 374 141 000 ns GuestLast=1 727 994 997 241 909 000 ns fSetTimeLastLoop=true )
2024-10-03 22:36:54 (3216): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-10-03 22:36:54 (3216): Guest Log: [INFO] Detected branch: prod
2024-10-03 22:37:00 (3216): Guest Log: This is the prod version of the ATLAS job wrapper
2024-10-03 22:37:00 (3216): Guest Log: Copying input files
2024-10-03 22:37:05 (3216): Guest Log: Copied input files into RunAtlas.
2024-10-03 22:37:05 (3216): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-10-03 22:37:05 (3216): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-10-03 22:37:05 (3216): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-10-03 22:37:05 (3216): Guest Log: Further information can be found at the LHC@home message board.
2024-10-03 22:37:17 (3216): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-10-03 22:37:17 (3216): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-10-03 22:37:17 (3216): Guest Log: 2.6.3.0 1581 0 30204 137955 4 1 3117399 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-10-03 22:37:18 (3216): Guest Log: copied the webapp to /var/www
2024-10-03 22:37:18 (3216): Guest Log: ATHENA_PROC_NUMBER=4
2024-10-03 22:37:18 (3216): Guest Log: ATHENA_CORE_NUMBER=4
2024-10-03 22:37:19 (3216): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-10-03 22:37:19 (3216): Guest Log:  *** Starting ATLAS job. (PandaID=6355461018 taskID=41481139) ***
2024-10-04 00:16:23 (3216): Status Report: Elapsed Time: '6000.000000'
2024-10-04 00:16:23 (3216): Status Report: CPU Time: '10333.000000'
2024-10-04 01:56:27 (3216): Status Report: Elapsed Time: '12000.000000'
2024-10-04 01:56:27 (3216): Status Report: CPU Time: '24739.265625'
2024-10-04 03:36:38 (3216): Status Report: Elapsed Time: '18000.000000'
2024-10-04 03:36:38 (3216): Status Report: CPU Time: '39162.046875'
2024-10-04 05:16:42 (3216): Status Report: Elapsed Time: '24000.000000'
2024-10-04 05:16:42 (3216): Status Report: CPU Time: '53576.437500'
2024-10-04 06:56:46 (3216): Status Report: Elapsed Time: '30000.000000'
2024-10-04 06:56:46 (3216): Status Report: CPU Time: '67977.250000'
2024-10-04 08:08:30 (3216): Guest Log:  *** Job finished ***
2024-10-04 08:08:30 (3216): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-10-04 08:08:30 (3216): Guest Log: 2024-10-04 13:08:22,422 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2024-10-04 08:08:30 (3216): Guest Log: 2024-10-04 13:08:23,425 | INFO     | [job] queue monitor thread has finished
2024-10-04 08:08:30 (3216): Guest Log: 2024-10-04 13:08:23,464 | INFO     | [data] queue_monitor thread has finished
2024-10-04 08:08:30 (3216): Guest Log: 2024-10-04 13:08:24,156 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140166061176640)>', '<ExcThread(monitor, started 140165024564992)>']
2024-10-04 08:08:30 (3216): Guest Log: 2024-10-04 13:08:24,551 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-10-04 08:08:30 (3216): Guest Log: 2024-10-04 13:08:24,551 | INFO     | [monitor] control thread has ended
2024-10-04 08:08:30 (3216): Guest Log: 2024-10-04 13:08:29,162 | INFO     | all workflow threads have been joined
2024-10-04 08:08:30 (3216): Guest Log: 2024-10-04 13:08:29,162 | INFO     | end of generic workflow (traces error code: 0)
2024-10-04 08:08:30 (3216): Guest Log: 2024-10-04 13:08:29,163 | INFO     | traces error code: 0
2024-10-04 08:08:30 (3216): Guest Log: 2024-10-04 13:08:29,163 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-10-04 08:08:30 (3216): Guest Log: 2024-10-04 13:08:29,282 [wrapper] ==== pilot stdout END ====
2024-10-04 08:08:30 (3216): Guest Log: 2024-10-04 13:08:29,286 [wrapper] ==== wrapper stdout RESUME ====
2024-10-04 08:08:30 (3216): Guest Log: 2024-10-04 13:08:29,289 [wrapper] pilotpid: 5958
2024-10-04 08:08:30 (3216): Guest Log: 2024-10-04 13:08:29,293 [wrapper] Pilot exit status: 0
2024-10-04 08:08:30 (3216): Guest Log: 2024-10-04 13:08:29,449 [wrapper] pandaids: 6355461018
2024-10-04 08:08:30 (3216): Guest Log: 2024-10-04 13:08:29,474 [wrapper] cleanup supervisor_pilot  6724 5959
2024-10-04 08:08:30 (3216): Guest Log: 2024-10-04 13:08:29,480 [wrapper] Test setup, not cleaning
2024-10-04 08:08:30 (3216): Guest Log: 2024-10-04 13:08:29,484 [wrapper] ==== wrapper stdout END ====
2024-10-04 08:08:30 (3216): Guest Log: 2024-10-04 13:08:29,488 [wrapper] ==== wrapper stderr END ====
2024-10-04 08:08:30 (3216): Guest Log: 2024-10-04 13:08:29,496 [wrapper] apfmon messages muted
2024-10-04 08:08:30 (3216): Guest Log:  *** Error codes and diagnostics ***
2024-10-04 08:08:30 (3216): Guest Log:     "exeErrorCode": 0,
2024-10-04 08:08:30 (3216): Guest Log:     "exeErrorDiag": "",
2024-10-04 08:08:30 (3216): Guest Log:     "pilotErrorCode": 0,
2024-10-04 08:08:30 (3216): Guest Log:     "pilotErrorDiag": "",
2024-10-04 08:08:30 (3216): Guest Log:  *** Listing of results directory ***
2024-10-04 08:08:30 (3216): Guest Log: total 234648
2024-10-04 08:08:30 (3216): Guest Log: -rw-r--r--. 1 atlas atlas    484599 Oct  3 18:47 pilot3.tar.gz
2024-10-04 08:08:30 (3216): Guest Log: -rw-r--r--. 1 atlas atlas      5653 Oct  3 19:01 queuedata.json
2024-10-04 08:08:30 (3216): Guest Log: -rwx------. 1 atlas atlas     33814 Oct  3 19:04 runpilot2-wrapper.sh
2024-10-04 08:08:30 (3216): Guest Log: -rwxr-xr-x. 1 atlas atlas      8929 Oct  4 03:37 init_data.xml
2024-10-04 08:08:30 (3216): Guest Log: -rwxr-xr-x. 1 atlas atlas    498167 Oct  4 03:37 input.tar.gz
2024-10-04 08:08:30 (3216): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 Oct  4 03:37 start_atlas.sh
2024-10-04 08:08:30 (3216): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct  4 03:37 EVNT.41481137._000035.pool.root.1 -> /data/./ATLAS.root_0
2024-10-04 08:08:30 (3216): Guest Log: -rw-r--r--. 1 atlas atlas      2532 Oct  4 03:37 pandaJob.out
2024-10-04 08:08:30 (3216): Guest Log: -rw-------. 1 atlas atlas       424 Oct  4 03:37 setup.sh.local
2024-10-04 08:08:30 (3216): Guest Log: -rw-------. 1 atlas atlas   1024518 Oct  4 03:41 agis_schedconf.cvmfs.json
2024-10-04 08:08:30 (3216): Guest Log: drwx------. 4 atlas atlas      4096 Oct  4 03:41 pilot3
2024-10-04 08:08:30 (3216): Guest Log: -rw-------. 1 atlas atlas 230596848 Oct  4 13:07 HITS.41481139._003199.pool.root.1
2024-10-04 08:08:30 (3216): Guest Log: -rw-------. 1 atlas atlas      1029 Oct  4 13:07 memory_monitor_summary.json
2024-10-04 08:08:30 (3216): Guest Log: -rw-------. 1 atlas atlas        95 Oct  4 13:08 pilot_heartbeat.json
2024-10-04 08:08:30 (3216): Guest Log: -rw-------. 1 atlas atlas   1615815 Oct  4 13:08 agis_ddmendpoints.agis.ALL.json
2024-10-04 08:08:30 (3216): Guest Log: -rw-------. 1 atlas atlas    441709 Oct  4 13:08 log.41481139._003199.job.log.tgz.1
2024-10-04 08:08:30 (3216): Guest Log: -rw-------. 1 atlas atlas      7736 Oct  4 13:08 heartbeat.json
2024-10-04 08:08:30 (3216): Guest Log: -rw-------. 1 atlas atlas      4394 Oct  4 13:08 pilotlog.txt
2024-10-04 08:08:30 (3216): Guest Log: -rw-------. 1 atlas atlas   2495470 Oct  4 13:08 log.41481139._003199.job.log.1
2024-10-04 08:08:30 (3216): Guest Log: -rw-------. 1 atlas atlas       357 Oct  4 13:08 output.list
2024-10-04 08:08:30 (3216): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct  4 13:08 runtime_log
2024-10-04 08:08:30 (3216): Guest Log: -rw-------. 1 atlas atlas   2959360 Oct  4 13:08 result.tar.gz
2024-10-04 08:08:30 (3216): Guest Log: -rw-r--r--. 1 atlas atlas     10907 Oct  4 13:08 runtime_log.err
2024-10-04 08:08:30 (3216): Guest Log: -rw-------. 1 atlas atlas       642 Oct  4 13:08 4XINDmtIgG6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmBqqKDmXcW0Jn.diag
2024-10-04 08:08:30 (3216): Guest Log: Looking for outputfile HITS.41481139._003199.pool.root.1
2024-10-04 08:08:30 (3216): Guest Log: HITS file was successfully produced
2024-10-04 08:08:30 (3216): Guest Log: -rw-------. 1 atlas atlas 230596848 Oct  4 13:07 /home/atlas/RunAtlas/HITS.41481139._003199.pool.root.1
2024-10-04 08:08:32 (3216): Guest Log: Successfully finished the ATLAS job!
2024-10-04 08:08:32 (3216): Guest Log: Copying the results back to the shared directory!
2024-10-04 08:08:32 (3216): Guest Log:  *** Contents of shared directory: ***
2024-10-04 08:08:32 (3216): Guest Log: total 810988
2024-10-04 08:08:32 (3216): Guest Log: -rwxrwxrwx. 1 root root 596353075 Oct  4 03:36 ATLAS.root_0
2024-10-04 08:08:32 (3216): Guest Log: -rwxrwxrwx. 1 root root 230596848 Oct  4 13:08 HITS.pool.root.1
2024-10-04 08:08:32 (3216): Guest Log: -rwxrwxrwx. 1 root root      8929 Oct  4 03:36 init_data.xml
2024-10-04 08:08:32 (3216): Guest Log: -rwxrwxrwx. 1 root root    498167 Oct  3 22:16 input.tar.gz
2024-10-04 08:08:32 (3216): Guest Log: -rwxrwxrwx. 1 root root   2959360 Oct  4 13:08 result.tar.gz
2024-10-04 08:08:32 (3216): Guest Log: -rwxrwxrwx. 1 root root     17537 Oct  3 22:16 start_atlas.sh
2024-10-04 08:08:32 (3216): Guest Log:  *** Success! Shutting down the machine. ***
2024-10-04 08:08:32 (3216): VM Completion File Detected.
2024-10-04 08:08:32 (3216): Powering off VM.
2024-10-04 08:08:32 (3216): Successfully stopped VM.
2024-10-04 08:08:32 (3216): Deregistering VM. (boinc_44a0a11400e35cb5, slot#1)
2024-10-04 08:08:32 (3216): Removing network bandwidth throttle group from VM.
2024-10-04 08:08:33 (3216): Removing VM from VirtualBox.
08:08:38 (3216): called boinc_finish(0)

</stderr_txt>
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