Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2024-10-05 03:12:35 (14572): Detected: vboxwrapper 26206
2024-10-05 03:12:35 (14572): Detected: BOINC client v8.0.2
2024-10-05 03:12:36 (14572): Detected: VirtualBox VboxManage Interface (Version: 6.1.12)
2024-10-05 03:12:36 (14572): Successfully copied 'init_data.xml' to the shared directory.
2024-10-05 03:12:37 (14572): Create VM. (boinc_dc2157f0df405e61, slot#12)
2024-10-05 03:12:37 (14572): Setting Memory Size for VM. (4200MB)
2024-10-05 03:12:37 (14572): Setting CPU Count for VM. (2)
2024-10-05 03:12:38 (14572): Setting Chipset Options for VM.
2024-10-05 03:12:38 (14572): Setting Graphics Controller Options for VM.
2024-10-05 03:12:38 (14572): Setting Boot Options for VM.
2024-10-05 03:12:38 (14572): Setting Network Configuration for NAT.
2024-10-05 03:12:39 (14572): Enabling VM Network Access.
2024-10-05 03:12:39 (14572): Disabling USB Support for VM.
2024-10-05 03:12:39 (14572): Disabling COM Port Support for VM.
2024-10-05 03:12:39 (14572): Disabling LPT Port Support for VM.
2024-10-05 03:12:40 (14572): Disabling Audio Support for VM.
2024-10-05 03:12:40 (14572): Disabling Clipboard Support for VM.
2024-10-05 03:12:40 (14572): Disabling Drag and Drop Support for VM.
2024-10-05 03:12:40 (14572): Adding storage controller(s) to VM.
2024-10-05 03:12:41 (14572): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-10-05 03:12:41 (14572): Adding VirtualBox Guest Additions to VM.
2024-10-05 03:12:41 (14572): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-10-05 03:12:42 (14572): forwarding host port 51484 to guest port 80
2024-10-05 03:12:42 (14572): Enabling remote desktop for VM.
2024-10-05 03:12:42 (14572): Required extension pack not installed, remote desktop not enabled.
2024-10-05 03:12:42 (14572): Enabling shared directory for VM.
2024-10-05 03:12:43 (14572): Starting VM using VBoxManage interface. (boinc_dc2157f0df405e61, slot#12)
2024-10-05 03:12:46 (14572): Successfully started VM. (PID = '11196')
2024-10-05 03:12:46 (14572): Reporting VM Process ID to BOINC.
2024-10-05 03:12:46 (14572): Guest Log: BIOS: VirtualBox 6.1.12
2024-10-05 03:12:46 (14572): Guest Log: CPUID EDX: 0x178bfbff
2024-10-05 03:12:46 (14572): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-10-05 03:12:46 (14572): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-10-05 03:12:46 (14572): VM state change detected. (old = 'poweredoff', new = 'running')
2024-10-05 03:12:46 (14572): Detected: Web Application Enabled (http://localhost:51484)
2024-10-05 03:12:46 (14572): Preference change detected
2024-10-05 03:12:46 (14572): Setting CPU throttle for VM. (40%)
2024-10-05 03:12:47 (14572): Setting checkpoint interval to 18000 seconds. (Higher value of (Preference: 18000 seconds) or (Vbox_job.xml: 900 seconds))
2024-10-05 03:12:48 (14572): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-10-05 03:12:48 (14572): Guest Log: BIOS: Booting from Hard Disk...
2024-10-05 03:12:53 (14572): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-10-05 03:12:53 (14572): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-10-05 03:12:53 (14572): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-10-05 03:12:53 (14572): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-10-05 03:12:53 (14572): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-10-05 03:12:53 (14572): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-10-05 03:12:53 (14572): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-10-05 03:12:53 (14572): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-10-05 03:12:53 (14572): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-10-05 03:12:53 (14572): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-10-05 03:12:53 (14572): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-10-05 03:12:53 (14572): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-10-05 03:12:53 (14572): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-10-05 03:12:53 (14572): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-10-05 03:12:53 (14572): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-10-05 03:12:53 (14572): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-10-05 03:12:53 (14572): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-10-05 03:12:53 (14572): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-10-05 03:12:53 (14572): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-10-05 03:12:53 (14572): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-10-05 03:12:53 (14572): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-10-05 03:12:53 (14572): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-10-05 03:12:53 (14572): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-10-05 03:12:53 (14572): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-10-05 03:12:53 (14572): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-10-05 03:12:53 (14572): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-10-05 03:12:53 (14572): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-10-05 03:12:53 (14572): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-10-05 03:12:53 (14572): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-10-05 03:12:53 (14572): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-10-05 03:12:53 (14572): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-10-05 03:12:53 (14572): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-10-05 03:13:02 (14572): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-10-05 03:13:02 (14572): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-10-05 03:13:14 (14572): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-10-05 03:13:14 (14572): Guest Log: 00:00:00.000081 main     Log opened 2024-10-05T03:13:12.851891000Z
2024-10-05 03:13:14 (14572): Guest Log: 00:00:00.000137 main     OS Product: Linux
2024-10-05 03:13:14 (14572): Guest Log: 00:00:00.000158 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-10-05 03:13:14 (14572): Guest Log: 00:00:00.000174 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-10-05 03:13:14 (14572): Guest Log: 00:00:00.000191 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-10-05 03:13:14 (14572): Guest Log: 00:00:00.000191 main     Process ID: 1264
2024-10-05 03:13:14 (14572): Guest Log: 00:00:00.000192 main     Package type: LINUX_64BITS_GENERIC
2024-10-05 03:13:14 (14572): Guest Log: 00:00:00.000832 main     5.2.32 r132073 started. Verbose level = 0
2024-10-05 03:13:14 (14572): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-10-05 03:13:14 (14572): Guest Log: [INFO] Mounting shared directory
2024-10-05 03:13:14 (14572): Guest Log: [INFO] Checking for init_data.xml
2024-10-05 03:13:21 (14572): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-10-05 03:13:21 (14572): Guest Log: [INFO] Detected branch: prod
2024-10-05 03:13:21 (14572): Guest Log: This is the prod version of the ATLAS job wrapper
2024-10-05 03:13:21 (14572): Guest Log: Copying input files
2024-10-05 03:13:24 (14572): Guest Log: 00:00:10.062173 timesync vgsvcTimeSyncWorker: Radical guest time change: -46 788 603 344 000ns (GuestNow=1 728 051 204 310 303 000 ns GuestLast=1 728 097 992 913 647 000 ns fSetTimeLastLoop=true )
2024-10-05 03:13:40 (14572): Guest Log: Copied input files into RunAtlas.
2024-10-05 03:13:40 (14572): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-10-05 03:13:40 (14572): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-10-05 03:13:40 (14572): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-10-05 03:13:40 (14572): Guest Log: Further information can be found at the LHC@home message board.
2024-10-05 03:13:50 (14572): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-10-05 03:13:51 (14572): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-10-05 03:13:51 (14572): Guest Log: 2.6.3.0 1541 0 30184 137971 4 1 3117399 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2024-10-05 03:13:52 (14572): Guest Log: copied the webapp to /var/www
2024-10-05 03:13:52 (14572): Guest Log: ATHENA_PROC_NUMBER=2
2024-10-05 03:13:52 (14572): Guest Log: ATHENA_CORE_NUMBER=2
2024-10-05 03:13:52 (14572): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-10-05 03:13:52 (14572): Guest Log:  *** Starting ATLAS job. (PandaID=6355216987 taskID=41481181) ***
2024-10-05 04:52:50 (14572): Status Report: Elapsed Time: '6000.000000'
2024-10-05 04:52:50 (14572): Status Report: CPU Time: '4356.078125'
2024-10-05 06:32:52 (14572): Status Report: Elapsed Time: '12000.000000'
2024-10-05 06:32:52 (14572): Status Report: CPU Time: '9804.593750'
2024-10-05 08:12:54 (14572): Status Report: Elapsed Time: '18000.000000'
2024-10-05 08:12:54 (14572): Status Report: CPU Time: '15252.796875'
2024-10-05 09:52:57 (14572): Status Report: Elapsed Time: '24000.000000'
2024-10-05 09:52:57 (14572): Status Report: CPU Time: '20700.234375'
2024-10-05 11:32:59 (14572): Status Report: Elapsed Time: '30000.000000'
2024-10-05 11:32:59 (14572): Status Report: CPU Time: '26149.031250'
2024-10-05 13:13:01 (14572): Status Report: Elapsed Time: '36000.000000'
2024-10-05 13:13:01 (14572): Status Report: CPU Time: '31597.015625'
2024-10-05 14:53:03 (14572): Status Report: Elapsed Time: '42000.000000'
2024-10-05 14:53:03 (14572): Status Report: CPU Time: '37045.000000'
2024-10-05 16:33:06 (14572): Status Report: Elapsed Time: '48000.000000'
2024-10-05 16:33:06 (14572): Status Report: CPU Time: '42492.562500'
2024-10-05 18:12:42 (14572): Guest Log:  *** Job finished ***
2024-10-05 18:12:42 (14572): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-10-05 18:12:42 (14572): Guest Log: 2024-10-05 05:12:33,183 | INFO     | [data] copytool_out thread has finished
2024-10-05 18:12:42 (14572): Guest Log: 2024-10-05 05:12:33,261 | INFO     | [job] validate thread has finished
2024-10-05 18:12:42 (14572): Guest Log: 2024-10-05 05:12:36,253 | INFO     | [data] queue_monitor thread has finished
2024-10-05 18:12:42 (14572): Guest Log: 2024-10-05 05:12:36,297 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140433991321408)>', '<ExcThread(monitor, started 140433409697536)>']
2024-10-05 18:12:42 (14572): Guest Log: 2024-10-05 05:12:36,474 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-10-05 18:12:42 (14572): Guest Log: 2024-10-05 05:12:36,474 | INFO     | [monitor] control thread has ended
2024-10-05 18:12:42 (14572): Guest Log: 2024-10-05 05:12:41,303 | INFO     | all workflow threads have been joined
2024-10-05 18:12:42 (14572): Guest Log: 2024-10-05 05:12:41,303 | INFO     | end of generic workflow (traces error code: 0)
2024-10-05 18:12:42 (14572): Guest Log: 2024-10-05 05:12:41,303 | INFO     | traces error code: 0
2024-10-05 18:12:42 (14572): Guest Log: 2024-10-05 05:12:41,303 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-10-05 18:12:42 (14572): Guest Log: 2024-10-05 05:12:41,352 [wrapper] ==== pilot stdout END ====
2024-10-05 18:12:42 (14572): Guest Log: 2024-10-05 05:12:41,354 [wrapper] ==== wrapper stdout RESUME ====
2024-10-05 18:12:42 (14572): Guest Log: 2024-10-05 05:12:41,357 [wrapper] pilotpid: 5866
2024-10-05 18:12:42 (14572): Guest Log: 2024-10-05 05:12:41,359 [wrapper] Pilot exit status: 0
2024-10-05 18:12:42 (14572): Guest Log: 2024-10-05 05:12:41,402 [wrapper] pandaids: 6355216987
2024-10-05 18:12:42 (14572): Guest Log: 2024-10-05 05:12:41,420 [wrapper] cleanup supervisor_pilot   643 5867
2024-10-05 18:12:42 (14572): Guest Log: 2024-10-05 05:12:41,423 [wrapper] Test setup, not cleaning
2024-10-05 18:12:42 (14572): Guest Log: 2024-10-05 05:12:41,426 [wrapper] ==== wrapper stdout END ====
2024-10-05 18:12:42 (14572): Guest Log: 2024-10-05 05:12:41,429 [wrapper] ==== wrapper stderr END ====
2024-10-05 18:12:42 (14572): Guest Log: 2024-10-05 05:12:41,510 [wrapper] apfmon messages muted
2024-10-05 18:12:42 (14572): Guest Log:  *** Error codes and diagnostics ***
2024-10-05 18:12:42 (14572): Guest Log:     "exeErrorCode": 0,
2024-10-05 18:12:42 (14572): Guest Log:     "exeErrorDiag": "",
2024-10-05 18:12:42 (14572): Guest Log:     "pilotErrorCode": 0,
2024-10-05 18:12:42 (14572): Guest Log:     "pilotErrorDiag": "",
2024-10-05 18:12:42 (14572): Guest Log:  *** Listing of results directory ***
2024-10-05 18:12:42 (14572): Guest Log: total 272840
2024-10-05 18:12:42 (14572): Guest Log: -rw-r--r--. 1 atlas atlas    493994 Sep 25 04:31 pilot3.tar.gz
2024-10-05 18:12:42 (14572): Guest Log: -rw-r--r--. 1 atlas atlas      5653 Oct  3 16:35 queuedata.json
2024-10-05 18:12:42 (14572): Guest Log: -rwx------. 1 atlas atlas     33814 Oct  3 16:36 runpilot2-wrapper.sh
2024-10-05 18:12:42 (14572): Guest Log: -rwxr-xr-x. 1 atlas atlas      9421 Oct  4 14:13 init_data.xml
2024-10-05 18:12:42 (14572): Guest Log: -rwxr-xr-x. 1 atlas atlas    506271 Oct  4 14:13 input.tar.gz
2024-10-05 18:12:42 (14572): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 Oct  4 14:13 start_atlas.sh
2024-10-05 18:12:42 (14572): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct  4 14:13 EVNT.41466530._000168.pool.root.1 -> /data/./ATLAS.root_0
2024-10-05 18:12:42 (14572): Guest Log: -rw-r--r--. 1 atlas atlas      2534 Oct  4 14:13 pandaJob.out
2024-10-05 18:12:42 (14572): Guest Log: -rw-------. 1 atlas atlas       424 Oct  4 14:13 setup.sh.local
2024-10-05 18:12:42 (14572): Guest Log: -rw-------. 1 atlas atlas   1024565 Oct  4 14:14 agis_schedconf.cvmfs.json
2024-10-05 18:12:42 (14572): Guest Log: drwx------. 6 atlas atlas      4096 Oct  4 14:14 pilot3
2024-10-05 18:12:42 (14572): Guest Log: -rw-------. 1 atlas atlas 262007611 Oct  5 05:10 HITS.41481181._010313.pool.root.1
2024-10-05 18:12:42 (14572): Guest Log: -rw-------. 1 atlas atlas      1028 Oct  5 05:11 memory_monitor_summary.json
2024-10-05 18:12:42 (14572): Guest Log: -rw-------. 1 atlas atlas   1615815 Oct  5 05:12 agis_ddmendpoints.agis.ALL.json
2024-10-05 18:12:42 (14572): Guest Log: -rw-------. 1 atlas atlas    667985 Oct  5 05:12 log.41481181._010313.job.log.tgz.1
2024-10-05 18:12:42 (14572): Guest Log: -rw-------. 1 atlas atlas        95 Oct  5 05:12 pilot_heartbeat.json
2024-10-05 18:12:42 (14572): Guest Log: -rw-------. 1 atlas atlas      7743 Oct  5 05:12 heartbeat.json
2024-10-05 18:12:42 (14572): Guest Log: -rw-------. 1 atlas atlas      4271 Oct  5 05:12 pilotlog.txt
2024-10-05 18:12:42 (14572): Guest Log: -rw-------. 1 atlas atlas   6113113 Oct  5 05:12 log.41481181._010313.job.log.1
2024-10-05 18:12:42 (14572): Guest Log: -rw-------. 1 atlas atlas       357 Oct  5 05:12 output.list
2024-10-05 18:12:42 (14572): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct  5 05:12 runtime_log
2024-10-05 18:12:42 (14572): Guest Log: -rw-------. 1 atlas atlas   6799360 Oct  5 05:12 result.tar.gz
2024-10-05 18:12:42 (14572): Guest Log: -rw-------. 1 atlas atlas       648 Oct  5 05:12 v7EMDmPzdG6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDm3cqKDmYsMAIm.diag
2024-10-05 18:12:42 (14572): Guest Log: -rw-r--r--. 1 atlas atlas     10922 Oct  5 05:12 runtime_log.err
2024-10-05 18:12:42 (14572): Guest Log: Looking for outputfile HITS.41481181._010313.pool.root.1
2024-10-05 18:12:42 (14572): Guest Log: HITS file was successfully produced
2024-10-05 18:12:42 (14572): Guest Log: -rw-------. 1 atlas atlas 262007611 Oct  5 05:10 /home/atlas/RunAtlas/HITS.41481181._010313.pool.root.1
2024-10-05 18:12:45 (14572): Guest Log: Successfully finished the ATLAS job!
2024-10-05 18:12:45 (14572): Guest Log: Copying the results back to the shared directory!
2024-10-05 18:12:45 (14572): Guest Log:  *** Contents of shared directory: ***
2024-10-05 18:12:45 (14572): Guest Log: total 884000
2024-10-05 18:12:45 (14572): Guest Log: -rwxrwxrwx. 1 root root 635865531 Oct  4 14:12 ATLAS.root_0
2024-10-05 18:12:45 (14572): Guest Log: -rwxrwxrwx. 1 root root 262007611 Oct  5 05:12 HITS.pool.root.1
2024-10-05 18:12:45 (14572): Guest Log: -rwxrwxrwx. 1 root root      9421 Oct  4 14:12 init_data.xml
2024-10-05 18:12:45 (14572): Guest Log: -rwxrwxrwx. 1 root root    506271 Oct  3 19:29 input.tar.gz
2024-10-05 18:12:45 (14572): Guest Log: -rwxrwxrwx. 1 root root   6799360 Oct  5 05:12 result.tar.gz
2024-10-05 18:12:45 (14572): Guest Log: -rwxrwxrwx. 1 root root     17537 Oct  3 19:28 start_atlas.sh
2024-10-05 18:12:45 (14572): Guest Log:  *** Success! Shutting down the machine. ***
2024-10-05 18:12:45 (14572): VM Completion File Detected.
2024-10-05 18:12:45 (14572): Powering off VM.
2024-10-05 18:12:46 (14572): Successfully stopped VM.
2024-10-05 18:12:46 (14572): Deregistering VM. (boinc_dc2157f0df405e61, slot#12)
2024-10-05 18:12:46 (14572): Removing network bandwidth throttle group from VM.
2024-10-05 18:12:46 (14572): Removing VM from VirtualBox.
18:12:52 (14572): called boinc_finish(0)

</stderr_txt>
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