Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:32:18 (4944): wrapper (7.7.26015): starting
05:32:18 (4944): wrapper: running run_atlas (--nthreads 8)
[2024-10-05 05:32:18] Arguments: --nthreads 8
[2024-10-05 05:32:18] Threads: 8
[2024-10-05 05:32:18] Checking for CVMFS
[2024-10-05 05:32:19] Probing /cvmfs/atlas.cern.ch... OK
[2024-10-05 05:32:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-10-05 05:32:19] Running cvmfs_config stat atlas.cern.ch
[2024-10-05 05:32:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-10-05 05:32:19] 2.11.2.0 32589 56637 75216 137992 0 111 18840055 25165825 4230 130560 0 39476241 99.924 22163764 8814 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2024-10-05 05:32:19] CVMFS is ok
[2024-10-05 05:32:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-10-05 05:32:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-10-05 05:32:19] Further information can be found at the LHC@home message board.
[2024-10-05 05:32:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-10-05 05:32:19] Checking for apptainer binary...
[2024-10-05 05:32:19] Using apptainer found in PATH at /usr/bin/apptainer
[2024-10-05 05:32:19] Running /usr/bin/apptainer --version
[2024-10-05 05:32:19] apptainer version 1.3.2-1.el7
[2024-10-05 05:32:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-10-05 05:32:20] cg-vwn476.simple-grid.lan
[2024-10-05 05:32:20] apptainer works
[2024-10-05 05:32:20] Set ATHENA_PROC_NUMBER=8
[2024-10-05 05:32:20] Set ATHENA_CORE_NUMBER=8
[2024-10-05 05:32:21] Starting ATLAS job with PandaID=6355177978
[2024-10-05 05:32:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-10-05 14:05:17]  *** The last 200 lines of the pilot log: ***
[2024-10-05 14:05:17] 2024-10-05 09:17:49,653 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-10-05 14:05:17] 2024-10-05 09:17:49,663 | INFO     | fitting pss+swap vs Time
[2024-10-05 14:05:17] 2024-10-05 09:17:49,663 | INFO     | model: linear, x: [1728099205.0, 1728099266.0, 1728099327.0, 1728099388.0, 1728099449.0, 1728099510.0, 1728099571.0, 1728099632.0, 1728099693.0, 1728099754.0, 1728
[2024-10-05 14:05:17] 2024-10-05 09:17:49,664 | INFO     | sum of square deviations: 11973599384.5
[2024-10-05 14:05:17] 2024-10-05 09:17:49,670 | INFO     | sum of deviations: 113665250604.00002
[2024-10-05 14:05:17] 2024-10-05 09:17:49,670 | INFO     | mean x: 1728109483.5
[2024-10-05 14:05:17] 2024-10-05 09:17:49,670 | INFO     | mean y: 2495572.775147929
[2024-10-05 14:05:17] 2024-10-05 09:17:49,671 | INFO     | -- intersect: -16402429229.323448
[2024-10-05 14:05:17] 2024-10-05 09:17:49,671 | INFO     | intersect: -16402429229.323448
[2024-10-05 14:05:17] 2024-10-05 09:17:49,671 | INFO     | chi2: 5.131290270963747
[2024-10-05 14:05:17] 2024-10-05 09:17:49,672 | INFO     | model: linear, x: [1728099205.0, 1728099266.0, 1728099327.0, 1728099388.0, 1728099449.0, 1728099510.0, 1728099571.0, 1728099632.0, 1728099693.0, 1728099754.0, 1728
[2024-10-05 14:05:17] 2024-10-05 09:17:49,672 | INFO     | sum of square deviations: 11450045382.0
[2024-10-05 14:05:17] 2024-10-05 09:17:49,678 | INFO     | sum of deviations: 134442766336.00002
[2024-10-05 14:05:17] 2024-10-05 09:17:49,678 | INFO     | mean x: 1728109331.0
[2024-10-05 14:05:17] 2024-10-05 09:17:49,678 | INFO     | mean y: 2501545.168168168
[2024-10-05 14:05:17] 2024-10-05 09:17:49,679 | INFO     | -- intersect: -20288404843.371624
[2024-10-05 14:05:17] 2024-10-05 09:17:49,679 | INFO     | intersect: -20288404843.371624
[2024-10-05 14:05:17] 2024-10-05 09:17:49,679 | INFO     | chi2: 4.380323183546288
[2024-10-05 14:05:17] 2024-10-05 09:17:49,679 | INFO     | current chi2=4.380323183546288 (change=14.635053714792367 %)
[2024-10-05 14:05:17] 2024-10-05 09:17:49,679 | INFO     | right removable region: 332
[2024-10-05 14:05:17] 2024-10-05 09:17:49,680 | INFO     | model: linear, x: [1728099510.0, 1728099571.0, 1728099632.0, 1728099693.0, 1728099754.0, 1728099815.0, 1728099876.0, 1728099937.0, 1728099998.0, 1728100059.0, 1728
[2024-10-05 14:05:17] 2024-10-05 09:17:49,680 | INFO     | sum of square deviations: 11450045382.0
[2024-10-05 14:05:17] 2024-10-05 09:17:49,686 | INFO     | sum of deviations: 27119774120.999947
[2024-10-05 14:05:17] 2024-10-05 09:17:49,687 | INFO     | mean x: 1728109636.0
[2024-10-05 14:05:17] 2024-10-05 09:17:49,687 | INFO     | mean y: 2520733.1621621624
[2024-10-05 14:05:17] 2024-10-05 09:17:49,687 | INFO     | -- intersect: -4090558501.119202
[2024-10-05 14:05:17] 2024-10-05 09:17:49,687 | INFO     | intersect: -4090558501.119202
[2024-10-05 14:05:17] 2024-10-05 09:17:49,688 | INFO     | chi2: 2.5631804719139035
[2024-10-05 14:05:17] 2024-10-05 09:17:49,688 | INFO     | current chi2=2.5631804719139035 (change=50.04803204336182 %)
[2024-10-05 14:05:17] 2024-10-05 09:17:49,691 | INFO     | model: linear, x: [1728099815.0, 1728099876.0, 1728099937.0, 1728099998.0, 1728100059.0, 1728100120.0, 1728100181.0, 1728100242.0, 1728100303.0, 1728100364.0, 1728
[2024-10-05 14:05:17] 2024-10-05 09:17:49,692 | INFO     | sum of square deviations: 10941980042.0
[2024-10-05 14:05:17] 2024-10-05 09:17:49,695 | INFO     | sum of deviations: -36417380822.99999
[2024-10-05 14:05:17] 2024-10-05 09:17:49,695 | INFO     | mean x: 1728109788.5
[2024-10-05 14:05:17] 2024-10-05 09:17:49,695 | INFO     | mean y: 2539804.213414634
[2024-10-05 14:05:17] 2024-10-05 09:17:49,695 | INFO     | -- intersect: 5754079473.468321
[2024-10-05 14:05:17] 2024-10-05 09:17:49,695 | INFO     | intersect: 5754079473.468321
[2024-10-05 14:05:17] 2024-10-05 09:17:49,696 | INFO     | chi2: 1.2753650982404197
[2024-10-05 14:05:17] 2024-10-05 09:17:49,696 | INFO     | current chi2=1.2753650982404197 (change=50.24286771004789 %)
[2024-10-05 14:05:17] 2024-10-05 09:17:49,696 | INFO     | model: linear, x: [1728100120.0, 1728100181.0, 1728100242.0, 1728100303.0, 1728100364.0, 1728100425.0, 1728100486.0, 1728100547.0, 1728100608.0, 1728100669.0, 1728
[2024-10-05 14:05:17] 2024-10-05 09:17:49,696 | INFO     | sum of square deviations: 10449170802.0
[2024-10-05 14:05:17] 2024-10-05 09:17:49,702 | INFO     | sum of deviations: -56965548571.99999
[2024-10-05 14:05:17] 2024-10-05 09:17:49,706 | INFO     | mean x: 1728109941.0
[2024-10-05 14:05:17] 2024-10-05 09:17:49,706 | INFO     | mean y: 2546103.40247678
[2024-10-05 14:05:17] 2024-10-05 09:17:49,706 | INFO     | -- intersect: 9423650672.096992
[2024-10-05 14:05:17] 2024-10-05 09:17:49,706 | INFO     | intersect: 9423650672.096992
[2024-10-05 14:05:17] 2024-10-05 09:17:49,707 | INFO     | chi2: 0.9640533366639814
[2024-10-05 14:05:17] 2024-10-05 09:17:49,707 | INFO     | current chi2=0.9640533366639814 (change=24.40961901858104 %)
[2024-10-05 14:05:17] 2024-10-05 09:17:49,707 | INFO     | left removable region: 30
[2024-10-05 14:05:17] 2024-10-05 09:17:49,708 | INFO     | model: linear, x: [1728101035.0, 1728101096.0, 1728101157.0, 1728101218.0, 1728101279.0, 1728101340.0, 1728101401.0, 1728101462.0, 1728101523.0, 1728101584.0, 1728
[2024-10-05 14:05:17] 2024-10-05 09:17:49,708 | INFO     | sum of square deviations: 8540720135.5
[2024-10-05 14:05:17] 2024-10-05 09:17:49,714 | INFO     | sum of deviations: -4290730667.0000033
[2024-10-05 14:05:17] 2024-10-05 09:17:49,714 | INFO     | mean x: 1728110215.5
[2024-10-05 14:05:17] 2024-10-05 09:17:49,714 | INFO     | mean y: 2542770.0794701986
[2024-10-05 14:05:17] 2024-10-05 09:17:49,714 | INFO     | -- intersect: 870719619.3338505
[2024-10-05 14:05:17] 2024-10-05 09:17:49,715 | INFO     | intersect: 870719619.3338505
[2024-10-05 14:05:17] 2024-10-05 09:17:49,715 | INFO     | chi2: 0.09463692509586673
[2024-10-05 14:05:17] 2024-10-05 09:17:49,715 | INFO     | -- intersect: 870719619.3338505
[2024-10-05 14:05:17] 2024-10-05 09:17:49,715 | INFO     | current memory leak: -0.50 B/s (using 302 data points, chi2=0.09)
[2024-10-05 14:05:17] 2024-10-05 09:17:49,718 | INFO     | ..............................
[2024-10-05 14:05:17] 2024-10-05 09:17:49,718 | INFO     | . Timing measurements:
[2024-10-05 14:05:17] 2024-10-05 09:17:49,718 | INFO     | . get job = 0 s
[2024-10-05 14:05:17] 2024-10-05 09:17:49,719 | INFO     | . initial setup = 2 s
[2024-10-05 14:05:17] 2024-10-05 09:17:49,719 | INFO     | . payload setup = 9 s
[2024-10-05 14:05:17] 2024-10-05 09:17:49,719 | INFO     | . stage-in = 0 s
[2024-10-05 14:05:17] 2024-10-05 09:17:49,719 | INFO     | . payload execution = 20588 s
[2024-10-05 14:05:17] 2024-10-05 09:17:49,719 | INFO     | . stage-out = 2 s
[2024-10-05 14:05:17] 2024-10-05 09:17:49,719 | INFO     | . log creation = 0 s
[2024-10-05 14:05:17] 2024-10-05 09:17:49,719 | INFO     | ..............................
[2024-10-05 14:05:17] 2024-10-05 09:17:49,863 | INFO     | 
[2024-10-05 14:05:17] 2024-10-05 09:17:49,864 | INFO     | job summary report
[2024-10-05 14:05:17] 2024-10-05 09:17:49,864 | INFO     | --------------------------------------------------
[2024-10-05 14:05:17] 2024-10-05 09:17:49,864 | INFO     | PanDA job id: 6355177978
[2024-10-05 14:05:17] 2024-10-05 09:17:49,864 | INFO     | task id: 41481139
[2024-10-05 14:05:17] 2024-10-05 09:17:49,864 | INFO     | errors: (none)
[2024-10-05 14:05:17] 2024-10-05 09:17:49,864 | INFO     | status: LOG_TRANSFER = DONE 
[2024-10-05 14:05:17] 2024-10-05 09:17:49,864 | INFO     | pilot state: finished 
[2024-10-05 14:05:17] 2024-10-05 09:17:49,865 | INFO     | transexitcode: 0
[2024-10-05 14:05:17] 2024-10-05 09:17:49,865 | INFO     | exeerrorcode: 0
[2024-10-05 14:05:17] 2024-10-05 09:17:49,865 | INFO     | exeerrordiag: 
[2024-10-05 14:05:17] 2024-10-05 09:17:49,865 | INFO     | exitcode: 0
[2024-10-05 14:05:17] 2024-10-05 09:17:49,865 | INFO     | exitmsg: OK
[2024-10-05 14:05:17] 2024-10-05 09:17:49,865 | INFO     | cpuconsumptiontime: 76787 s
[2024-10-05 14:05:17] 2024-10-05 09:17:49,865 | INFO     | nevents: 400
[2024-10-05 14:05:17] 2024-10-05 09:17:49,865 | INFO     | neventsw: 0
[2024-10-05 14:05:17] 2024-10-05 09:17:49,865 | INFO     | pid: 17812
[2024-10-05 14:05:17] 2024-10-05 09:17:49,865 | INFO     | pgrp: 17812
[2024-10-05 14:05:17] 2024-10-05 09:17:49,865 | INFO     | corecount: 8
[2024-10-05 14:05:17] 2024-10-05 09:17:49,866 | INFO     | event service: False
[2024-10-05 14:05:17] 2024-10-05 09:17:49,866 | INFO     | sizes: {0: 2435208, 1: 2435463, 2: 2435463, 11: 2435697, 12: 2435725, 20602: 2468844, 20606: 2477924, 20691: 2478038}
[2024-10-05 14:05:17] 2024-10-05 09:17:49,866 | INFO     | --------------------------------------------------
[2024-10-05 14:05:17] 2024-10-05 09:17:49,866 | INFO     | 
[2024-10-05 14:05:17] 2024-10-05 09:17:49,866 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2024-10-05 14:05:17] 2024-10-05 09:17:50,349 | INFO     | queue jobs had 0 job(s) [purged]
[2024-10-05 14:05:17] 2024-10-05 09:17:50,349 | INFO     | queue payloads had 0 job(s) [purged]
[2024-10-05 14:05:17] 2024-10-05 09:17:50,349 | INFO     | queue data_in had 0 job(s) [purged]
[2024-10-05 14:05:17] 2024-10-05 09:17:50,349 | INFO     | queue data_out had 0 job(s) [purged]
[2024-10-05 14:05:17] 2024-10-05 09:17:50,349 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-10-05 14:05:17] 2024-10-05 09:17:50,349 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-10-05 14:05:17] 2024-10-05 09:17:50,349 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-10-05 14:05:17] 2024-10-05 09:17:50,350 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-10-05 14:05:17] 2024-10-05 09:17:50,350 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-10-05 14:05:17] 2024-10-05 09:17:50,350 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-10-05 14:05:17] 2024-10-05 09:17:50,350 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-10-05 14:05:17] 2024-10-05 09:17:50,350 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-10-05 14:05:17] 2024-10-05 09:17:50,350 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-10-05 14:05:17] 2024-10-05 09:17:50,350 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-10-05 14:05:17] 2024-10-05 09:17:50,350 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-10-05 14:05:17] 2024-10-05 09:17:50,350 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-10-05 14:05:17] 2024-10-05 09:17:50,350 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-10-05 14:05:17] 2024-10-05 09:17:50,350 | INFO     | queue completed_jobids has 1 job(s)
[2024-10-05 14:05:17] 2024-10-05 09:17:50,350 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-10-05 14:05:17] 2024-10-05 09:17:50,351 | INFO     | queue messages had 0 job(s) [purged]
[2024-10-05 14:05:17] 2024-10-05 09:17:50,351 | INFO     | job 6355177978 has completed (purged errors)
[2024-10-05 14:05:17] 2024-10-05 09:17:50,351 | INFO     | overall cleanup function is called
[2024-10-05 14:05:17] 2024-10-05 09:17:51,360 | INFO     | --- collectZombieJob: --- 10, [17812]
[2024-10-05 14:05:17] 2024-10-05 09:17:51,360 | INFO     | zombie collector waiting for pid 17812
[2024-10-05 14:05:17] 2024-10-05 09:17:51,360 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-10-05 14:05:17] 2024-10-05 09:17:51,361 | INFO     | collected zombie processes
[2024-10-05 14:05:17] 2024-10-05 09:17:51,361 | INFO     | will  attempt to kill all subprocesses of pid=17812
[2024-10-05 14:05:17] 2024-10-05 09:17:52,067 [wrapper] supervise_pilot (15 min periods counter: 24)
[2024-10-05 14:05:17] 2024-10-05 09:17:52,302 | INFO     | process IDs to be killed: [17812] (in reverse order)
[2024-10-05 14:05:17] 2024-10-05 09:17:52,884 | WARNING  | found no corresponding commands to process id(s)
[2024-10-05 14:05:17] 2024-10-05 09:17:52,884 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-10-05 14:05:17] 2024-10-05 09:17:52,887 | INFO     | did not find any defunct processes belonging to 17812
[2024-10-05 14:05:17] 2024-10-05 09:17:52,890 | INFO     | did not find any defunct processes belonging to 17812
[2024-10-05 14:05:17] 2024-10-05 09:17:52,891 | INFO     | ready for new job
[2024-10-05 14:05:17] 2024-10-05 09:17:52,891 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-10-05 14:05:17] 2024-10-05 09:17:52,893 | INFO     | *************************************
[2024-10-05 14:05:17] 2024-10-05 09:17:52,893 | INFO     | ***  PanDA Pilot version 3.8.2.8  ***
[2024-10-05 14:05:17] 2024-10-05 09:17:52,893 | INFO     | *************************************
[2024-10-05 14:05:17] 2024-10-05 09:17:52,893 | INFO     | 
[2024-10-05 14:05:17] 2024-10-05 09:17:52,894 | INFO     | pilot is running in a VM
[2024-10-05 14:05:17] 2024-10-05 09:17:52,894 | INFO     | architecture information:
[2024-10-05 14:05:17] 2024-10-05 09:17:52,895 | INFO     | executing command: cat /etc/os-release
[2024-10-05 14:05:17] 2024-10-05 09:17:53,092 | INFO     | cat /etc/os-release:
[2024-10-05 14:05:17] NAME="CentOS Linux"
[2024-10-05 14:05:17] VERSION="7 (Core)"
[2024-10-05 14:05:17] ID="centos"
[2024-10-05 14:05:17] ID_LIKE="rhel fedora"
[2024-10-05 14:05:17] VERSION_ID="7"
[2024-10-05 14:05:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-10-05 14:05:17] ANSI_COLOR="0;31"
[2024-10-05 14:05:17] CPE_NAME="cpe:/o:centos:centos:7"
[2024-10-05 14:05:17] HOME_URL="https://www.centos.org/"
[2024-10-05 14:05:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-10-05 14:05:17] 
[2024-10-05 14:05:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-10-05 14:05:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-10-05 14:05:17] REDHAT_SUPPORT_PRODUCT="centos"
[2024-10-05 14:05:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-10-05 14:05:17] 
[2024-10-05 14:05:17] 2024-10-05 09:17:53,092 | INFO     | *************************************
[2024-10-05 14:05:17] 2024-10-05 09:17:53,595 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2024-10-05 14:05:17] 2024-10-05 09:17:53,873 | INFO     | sufficient remaining disk space (488135196672 B)
[2024-10-05 14:05:17] 2024-10-05 09:17:53,873 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-10-05 14:05:17] 2024-10-05 09:17:53,873 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-10-05 14:05:17] 2024-10-05 09:17:53,874 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-10-05 14:05:17] 2024-10-05 09:17:53,874 | INFO     | aborting loop
[2024-10-05 14:05:17] 2024-10-05 09:17:54,462 | INFO     | found 0 job(s) in 20 queues
[2024-10-05 14:05:17] 2024-10-05 09:17:54,462 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-10-05 14:05:17] 2024-10-05 09:17:54,463 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-10-05 14:05:17] 2024-10-05 09:17:54,750 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-10-05 14:05:17] 2024-10-05 09:17:54,879 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-10-05 14:05:17] 2024-10-05 09:17:54,879 | INFO     | [job] retrieve thread has finished
[2024-10-05 14:05:17] 2024-10-05 09:17:54,880 | INFO     | [job] job monitor thread has finished
[2024-10-05 14:05:17] 2024-10-05 09:17:54,891 | INFO     | all payload control threads have been joined
[2024-10-05 14:05:17] 2024-10-05 09:17:54,899 | INFO     | all data control threads have been joined
[2024-10-05 14:05:17] 2024-10-05 09:17:55,041 | INFO     | [job] create_data_payload thread has finished
[2024-10-05 14:05:17] 2024-10-05 09:17:55,341 | INFO     | [payload] run_realtimelog thread has finished
[2024-10-05 14:05:17] 2024-10-05 09:17:55,415 | INFO     | [data] copytool_in thread has finished
[2024-10-05 14:05:17] 2024-10-05 09:17:55,517 | INFO     | all job control threads have been joined
[2024-10-05 14:05:17] 2024-10-05 09:17:55,554 | INFO     | [payload] failed_post thread has finished
[2024-10-05 14:05:17] 2024-10-05 09:17:55,829 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-10-05 14:05:17] 2024-10-05 09:17:55,844 | INFO     | [job] validate thread has finished
[2024-10-05 14:05:17] 2024-10-05 09:17:55,845 | INFO     | [payload] validate_pre thread has finished
[2024-10-05 14:05:17] 2024-10-05 09:17:55,885 | INFO     | [job] queue monitor thread has finished
[2024-10-05 14:05:17] 2024-10-05 09:17:55,897 | INFO     | [payload] control thread has finished
[2024-10-05 14:05:17] 2024-10-05 09:17:55,905 | INFO     | [data] control thread has finished
[2024-10-05 14:05:17] 2024-10-05 09:17:56,026 | INFO     | [payload] execute_payloads thread has finished
[2024-10-05 14:05:17] 2024-10-05 09:17:56,182 | INFO     | [payload] validate_post thread has finished
[2024-10-05 14:05:17] 2024-10-05 09:17:56,523 | INFO     | [job] control thread has finished
[2024-10-05 14:05:17] 2024-10-05 09:17:56,758 | INFO     | [data] copytool_out thread has finished
[2024-10-05 14:05:17] 2024-10-05 09:17:59,838 | INFO     | [data] queue_monitor thread has finished
[2024-10-05 14:05:17] 2024-10-05 09:18:00,596 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139994456307520)>', '<ExcThread(monitor, started 139993720813312)>']
[2024-10-05 14:05:17] 2024-10-05 09:18:01,503 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-10-05 14:05:17] 2024-10-05 09:18:01,503 | INFO     | [monitor] control thread has ended
[2024-10-05 14:05:17] 2024-10-05 09:18:05,622 | INFO     | all workflow threads have been joined
[2024-10-05 14:05:17] 2024-10-05 09:18:05,622 | INFO     | end of generic workflow (traces error code: 0)
[2024-10-05 14:05:17] 2024-10-05 09:18:05,623 | INFO     | traces error code: 0
[2024-10-05 14:05:17] 2024-10-05 09:18:05,623 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-10-05 14:05:17] 2024-10-05 09:18:05,935 [wrapper] ==== pilot stdout END ====
[2024-10-05 14:05:17] 2024-10-05 09:18:06,044 [wrapper] ==== wrapper stdout RESUME ====
[2024-10-05 14:05:17] 2024-10-05 09:18:06,111 [wrapper] pilotpid: 8833
[2024-10-05 14:05:17] 2024-10-05 09:18:06,188 [wrapper] Pilot exit status: 0
[2024-10-05 14:05:17] 2024-10-05 09:18:06,608 [wrapper] pandaids: 6355177978
[2024-10-05 14:05:17] 2024-10-05 09:18:07,237 [wrapper] cleanup supervisor_pilot 29975 8834
[2024-10-05 14:05:17] 2024-10-05 09:18:07,281 [wrapper] Test setup, not cleaning
[2024-10-05 14:05:17] 2024-10-05 09:18:07,321 [wrapper] ==== wrapper stdout END ====
[2024-10-05 14:05:17] 2024-10-05 09:18:07,372 [wrapper] ==== wrapper stderr END ====
[2024-10-05 14:05:17] 2024-10-05 09:18:07,463 [wrapper] apfmon messages muted
[2024-10-05 14:05:17]  *** Error codes and diagnostics ***
[2024-10-05 14:05:17]     "exeErrorCode": 0,
[2024-10-05 14:05:17]     "exeErrorDiag": "",
[2024-10-05 14:05:17]     "pilotErrorCode": 0,
[2024-10-05 14:05:17]     "pilotErrorDiag": "",
[2024-10-05 14:05:17]  *** Listing of results directory ***
[2024-10-05 14:05:17] total 802516
[2024-10-05 14:05:17] -rw-r--r--. 1 boinc boinc    484599 Oct  3 12:40 pilot3.tar.gz
[2024-10-05 14:05:17] -rw-r--r--. 1 boinc boinc      5653 Oct  3 12:50 queuedata.json
[2024-10-05 14:05:17] -rwx------. 1 boinc boinc     33814 Oct  3 12:52 runpilot2-wrapper.sh
[2024-10-05 14:05:17] -rw-r--r--. 1 boinc boinc       100 Oct  5 05:32 wrapper_26015_x86_64-pc-linux-gnu
[2024-10-05 14:05:17] -rwxr-xr-x. 1 boinc boinc      7986 Oct  5 05:32 run_atlas
[2024-10-05 14:05:17] -rw-r--r--. 1 boinc boinc       105 Oct  5 05:32 job.xml
[2024-10-05 14:05:17] -rw-r--r--. 1 boinc boinc      6347 Oct  5 05:32 init_data.xml
[2024-10-05 14:05:17] -rw-r--r--. 2 boinc boinc 588363263 Oct  5 05:32 EVNT.41481137._000044.pool.root.1
[2024-10-05 14:05:17] -rw-r--r--. 2 boinc boinc     17537 Oct  5 05:32 start_atlas.sh
[2024-10-05 14:05:17] drwxrwx--x. 2 boinc boinc        68 Oct  5 05:32 shared
[2024-10-05 14:05:17] -rw-r--r--. 2 boinc boinc    498153 Oct  5 05:32 input.tar.gz
[2024-10-05 14:05:17] -rw-r--r--. 1 boinc boinc         0 Oct  5 05:32 boinc_lockfile
[2024-10-05 14:05:17] -rw-r--r--. 1 boinc boinc      2533 Oct  5 05:32 pandaJob.out
[2024-10-05 14:05:17] -rw-------. 1 boinc boinc       424 Oct  5 05:32 setup.sh.local
[2024-10-05 14:05:17] -rw-------. 1 boinc boinc   1024492 Oct  5 05:32 agis_schedconf.cvmfs.json
[2024-10-05 14:05:17] drwx------. 4 boinc boinc      4096 Oct  5 05:32 pilot3
[2024-10-05 14:05:17] -rw-------. 1 boinc boinc 225030466 Oct  5 11:15 HITS.41481139._002411.pool.root.1
[2024-10-05 14:05:17] -rw-r--r--. 1 boinc boinc       532 Oct  5 11:15 boinc_task_state.xml
[2024-10-05 14:05:17] -rw-------. 1 boinc boinc      1015 Oct  5 11:16 memory_monitor_summary.json
[2024-10-05 14:05:17] -rw-------. 1 boinc boinc   1615815 Oct  5 11:16 agis_ddmendpoints.agis.ALL.json
[2024-10-05 14:05:17] -rw-------. 1 boinc boinc    433862 Oct  5 11:16 log.41481139._002411.job.log.tgz.1
[2024-10-05 14:05:17] -rw-------. 1 boinc boinc        95 Oct  5 11:17 pilot_heartbeat.json
[2024-10-05 14:05:17] -rw-------. 1 boinc boinc      7680 Oct  5 11:17 heartbeat.json
[2024-10-05 14:05:17] -rw-------. 1 boinc boinc      4274 Oct  5 11:18 pilotlog.txt
[2024-10-05 14:05:17] -rw-------. 1 boinc boinc   1828727 Oct  5 11:18 log.41481139._002411.job.log.1
[2024-10-05 14:05:17] -rw-------. 1 boinc boinc       357 Oct  5 11:18 output.list
[2024-10-05 14:05:17] -rw-r--r--. 1 boinc boinc       620 Oct  5 11:18 runtime_log
[2024-10-05 14:05:17] -rw-------. 1 boinc boinc   2283520 Oct  5 11:18 result.tar.gz
[2024-10-05 14:05:17] -rw-------. 1 boinc boinc       646 Oct  5 11:18 Wm7KDmicYG6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDm25pKDmvBvlJo.diag
[2024-10-05 14:05:17] -rw-r--r--. 1 boinc boinc     10999 Oct  5 11:18 runtime_log.err
[2024-10-05 14:05:17] -rw-r--r--. 1 boinc boinc      8192 Oct  5 14:05 boinc_mmap_file
[2024-10-05 14:05:17] -rw-r--r--. 1 boinc boinc        28 Oct  5 14:05 wrapper_checkpoint.txt
[2024-10-05 14:05:17] -rw-r--r--. 1 boinc boinc     21471 Oct  5 14:05 stderr.txt
[2024-10-05 14:05:17] HITS file was successfully produced:
[2024-10-05 14:05:17] -rw-------. 1 boinc boinc 225030466 Oct  5 11:15 shared/HITS.pool.root.1
[2024-10-05 14:05:17]  *** Contents of shared directory: ***
[2024-10-05 14:05:17] total 797076
[2024-10-05 14:05:17] -rw-r--r--. 2 boinc boinc 588363263 Oct  5 05:32 ATLAS.root_0
[2024-10-05 14:05:17] -rw-r--r--. 2 boinc boinc     17537 Oct  5 05:32 start_atlas.sh
[2024-10-05 14:05:17] -rw-r--r--. 2 boinc boinc    498153 Oct  5 05:32 input.tar.gz
[2024-10-05 14:05:17] -rw-------. 1 boinc boinc 225030466 Oct  5 11:15 HITS.pool.root.1
[2024-10-05 14:05:17] -rw-------. 1 boinc boinc   2283520 Oct  5 11:18 result.tar.gz
14:05:19 (4944): run_atlas exited; CPU time 76719.061597
14:05:19 (4944): called boinc_finish(0)

</stderr_txt>
]]>

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