Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2024-10-04 19:08:51 (4136): Detected: vboxwrapper 26206
2024-10-04 19:08:51 (4136): Detected: BOINC client v8.0.2
2024-10-04 19:08:52 (4136): Detected: VirtualBox VboxManage Interface (Version: 7.0.14)
2024-10-04 19:08:52 (4136): Successfully copied 'init_data.xml' to the shared directory.
2024-10-04 19:08:53 (4136): Create VM. (boinc_5245e92d900abdeb, slot#8)
2024-10-04 19:08:53 (4136): Setting Memory Size for VM. (4400MB)
2024-10-04 19:08:53 (4136): Setting CPU Count for VM. (4)
2024-10-04 19:08:54 (4136): Setting Chipset Options for VM.
2024-10-04 19:08:54 (4136): Setting Graphics Controller Options for VM.
2024-10-04 19:08:54 (4136): Setting Boot Options for VM.
2024-10-04 19:08:54 (4136): Setting Network Configuration for NAT.
2024-10-04 19:08:55 (4136): Enabling VM Network Access.
2024-10-04 19:08:55 (4136): Disabling USB Support for VM.
2024-10-04 19:08:55 (4136): Disabling COM Port Support for VM.
2024-10-04 19:08:55 (4136): Disabling LPT Port Support for VM.
2024-10-04 19:08:56 (4136): Disabling Audio Support for VM.
2024-10-04 19:08:56 (4136): Disabling Clipboard Support for VM.
2024-10-04 19:08:56 (4136): Disabling Drag and Drop Support for VM.
2024-10-04 19:08:56 (4136): Adding storage controller(s) to VM.
2024-10-04 19:08:57 (4136): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-10-04 19:08:57 (4136): Adding VirtualBox Guest Additions to VM.
2024-10-04 19:08:57 (4136): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-10-04 19:08:58 (4136): forwarding host port 57808 to guest port 80
2024-10-04 19:08:58 (4136): Enabling remote desktop for VM.
2024-10-04 19:08:58 (4136): Required extension pack not installed, remote desktop not enabled.
2024-10-04 19:08:58 (4136): Enabling shared directory for VM.
2024-10-04 19:08:59 (4136): Starting VM using VBoxManage interface. (boinc_5245e92d900abdeb, slot#8)
2024-10-04 19:09:06 (4136): Successfully started VM. (PID = '8164')
2024-10-04 19:09:06 (4136): Reporting VM Process ID to BOINC.
2024-10-04 19:09:06 (4136): Guest Log: BIOS: VirtualBox 7.0.14
2024-10-04 19:09:06 (4136): Guest Log: CPUID EDX: 0x178bfbff
2024-10-04 19:09:06 (4136): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-10-04 19:09:06 (4136): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-10-04 19:09:06 (4136): VM state change detected. (old = 'poweredoff', new = 'running')
2024-10-04 19:09:06 (4136): Detected: Web Application Enabled (http://localhost:57808)
2024-10-04 19:09:06 (4136): Preference change detected
2024-10-04 19:09:06 (4136): Setting CPU throttle for VM. (100%)
2024-10-04 19:09:07 (4136): Setting network throttle for VM. (1536KB)
2024-10-04 19:09:07 (4136): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-10-04 19:09:08 (4136): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-10-04 19:09:08 (4136): Guest Log: BIOS: Booting from Hard Disk...
2024-10-04 19:09:11 (4136): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-10-04 19:09:11 (4136): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-10-04 19:09:11 (4136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-10-04 19:09:11 (4136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-10-04 19:09:11 (4136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-10-04 19:09:11 (4136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-10-04 19:09:11 (4136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-10-04 19:09:11 (4136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-10-04 19:09:11 (4136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-10-04 19:09:11 (4136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-10-04 19:09:11 (4136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-10-04 19:09:11 (4136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-10-04 19:09:11 (4136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-10-04 19:09:11 (4136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-10-04 19:09:11 (4136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-10-04 19:09:11 (4136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-10-04 19:09:11 (4136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-10-04 19:09:11 (4136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-10-04 19:09:11 (4136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-10-04 19:09:11 (4136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-10-04 19:09:11 (4136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-10-04 19:09:11 (4136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-10-04 19:09:11 (4136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-10-04 19:09:11 (4136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-10-04 19:09:11 (4136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-10-04 19:09:11 (4136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-10-04 19:09:11 (4136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-10-04 19:09:11 (4136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-10-04 19:09:11 (4136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-10-04 19:09:11 (4136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-10-04 19:09:11 (4136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-10-04 19:09:11 (4136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-10-04 19:09:23 (4136): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-10-04 19:09:23 (4136): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-10-04 19:09:39 (4136): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-10-04 19:09:39 (4136): Guest Log: 00:00:00.000309 main     Log opened 2024-10-04T19:09:37.509794000Z
2024-10-04 19:09:39 (4136): Guest Log: 00:00:00.000492 main     OS Product: Linux
2024-10-04 19:09:39 (4136): Guest Log: 00:00:00.000548 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-10-04 19:09:39 (4136): Guest Log: 00:00:00.000592 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-10-04 19:09:39 (4136): Guest Log: 00:00:00.000636 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-10-04 19:09:39 (4136): Guest Log: 00:00:00.000637 main     Process ID: 1305
2024-10-04 19:09:39 (4136): Guest Log: 00:00:00.000639 main     Package type: LINUX_64BITS_GENERIC
2024-10-04 19:09:39 (4136): Guest Log: 00:00:00.001993 main     5.2.32 r132073 started. Verbose level = 0
2024-10-04 19:09:39 (4136): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-10-04 19:09:39 (4136): Guest Log: [INFO] Mounting shared directory
2024-10-04 19:09:39 (4136): Guest Log: [INFO] Checking for init_data.xml
2024-10-04 19:09:44 (4136): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-10-04 19:09:44 (4136): Guest Log: [INFO] Detected branch: prod
2024-10-04 19:09:45 (4136): Guest Log: This is the prod version of the ATLAS job wrapper
2024-10-04 19:09:45 (4136): Guest Log: Copying input files
2024-10-04 19:09:49 (4136): Guest Log: 00:00:10.005852 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 788 348 595 000ns (GuestNow=1 728 058 189 166 313 000 ns GuestLast=1 728 068 977 514 908 000 ns fSetTimeLastLoop=true )
2024-10-04 19:09:49 (4136): Guest Log: Copied input files into RunAtlas.
2024-10-04 19:09:49 (4136): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-10-04 19:09:49 (4136): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-10-04 19:09:49 (4136): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-10-04 19:09:49 (4136): Guest Log: Further information can be found at the LHC@home message board.
2024-10-04 19:09:59 (4136): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-10-04 19:10:00 (4136): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-10-04 19:10:00 (4136): Guest Log: 2.6.3.0 1581 0 30184 137975 4 1 3117399 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-10-04 19:10:01 (4136): Guest Log: copied the webapp to /var/www
2024-10-04 19:10:01 (4136): Guest Log: ATHENA_PROC_NUMBER=4
2024-10-04 19:10:01 (4136): Guest Log: ATHENA_CORE_NUMBER=4
2024-10-04 19:10:02 (4136): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-10-04 19:10:02 (4136): Guest Log:  *** Starting ATLAS job. (PandaID=6355175890 taskID=41481139) ***
2024-10-04 19:29:03 (4136): Preference change detected
2024-10-04 19:29:03 (4136): Setting CPU throttle for VM. (100%)
2024-10-04 19:29:03 (4136): Setting network throttle for VM. (1536KB)
2024-10-04 19:29:04 (4136): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-10-04 20:49:10 (4136): Status Report: Elapsed Time: '6000.000000'
2024-10-04 20:49:10 (4136): Status Report: CPU Time: '18891.406250'
2024-10-04 21:04:05 (4136): Preference change detected
2024-10-04 21:04:05 (4136): Setting CPU throttle for VM. (100%)
2024-10-04 21:04:05 (4136): Setting network throttle for VM. (1536KB)
2024-10-04 21:04:05 (4136): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-10-04 22:29:14 (4136): Status Report: Elapsed Time: '12000.000000'
2024-10-04 22:29:14 (4136): Status Report: CPU Time: '42879.843750'
2024-10-05 00:09:18 (4136): Status Report: Elapsed Time: '18000.000000'
2024-10-05 00:09:18 (4136): Status Report: CPU Time: '66869.609375'
2024-10-05 00:53:13 (4136): Guest Log:  *** Job finished ***
2024-10-05 00:53:13 (4136): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-10-05 00:53:13 (4136): Guest Log: 2024-10-04 21:52:59,010 | INFO     | [data] queue_monitor thread has finished
2024-10-05 00:53:13 (4136): Guest Log: 2024-10-04 21:53:03,007 | INFO     | job.realtimelogging is not enabled
2024-10-05 00:53:13 (4136): Guest Log: 2024-10-04 21:53:04,010 | INFO     | [payload] run_realtimelog thread has finished
2024-10-05 00:53:13 (4136): Guest Log: 2024-10-04 21:53:05,622 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140238130923328)>', '<ExcThread(monitor, started 140237292418816)>']
2024-10-05 00:53:13 (4136): Guest Log: 2024-10-04 21:53:06,434 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-10-05 00:53:13 (4136): Guest Log: 2024-10-04 21:53:06,435 | INFO     | [monitor] control thread has ended
2024-10-05 00:53:13 (4136): Guest Log: 2024-10-04 21:53:10,669 | INFO     | all workflow threads have been joined
2024-10-05 00:53:13 (4136): Guest Log: 2024-10-04 21:53:10,669 | INFO     | end of generic workflow (traces error code: 0)
2024-10-05 00:53:13 (4136): Guest Log: 2024-10-04 21:53:10,669 | INFO     | traces error code: 0
2024-10-05 00:53:13 (4136): Guest Log: 2024-10-04 21:53:10,670 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-10-05 00:53:13 (4136): Guest Log: 2024-10-04 21:53:10,876 [wrapper] ==== pilot stdout END ====
2024-10-05 00:53:13 (4136): Guest Log: 2024-10-04 21:53:10,887 [wrapper] ==== wrapper stdout RESUME ====
2024-10-05 00:53:13 (4136): Guest Log: 2024-10-04 21:53:10,898 [wrapper] pilotpid: 5944
2024-10-05 00:53:13 (4136): Guest Log: 2024-10-04 21:53:10,908 [wrapper] Pilot exit status: 0
2024-10-05 00:53:13 (4136): Guest Log: 2024-10-04 21:53:11,119 [wrapper] pandaids: 6355175890
2024-10-05 00:53:13 (4136): Guest Log: 2024-10-04 21:53:11,189 [wrapper] cleanup supervisor_pilot 22966 5945
2024-10-05 00:53:13 (4136): Guest Log: 2024-10-04 21:53:11,200 [wrapper] Test setup, not cleaning
2024-10-05 00:53:13 (4136): Guest Log: 2024-10-04 21:53:11,210 [wrapper] ==== wrapper stdout END ====
2024-10-05 00:53:13 (4136): Guest Log: 2024-10-04 21:53:11,219 [wrapper] ==== wrapper stderr END ====
2024-10-05 00:53:13 (4136): Guest Log: 2024-10-04 21:53:11,238 [wrapper] apfmon messages muted
2024-10-05 00:53:13 (4136): Guest Log:  *** Error codes and diagnostics ***
2024-10-05 00:53:13 (4136): Guest Log:     "exeErrorCode": 0,
2024-10-05 00:53:13 (4136): Guest Log:     "exeErrorDiag": "",
2024-10-05 00:53:13 (4136): Guest Log:     "pilotErrorCode": 0,
2024-10-05 00:53:13 (4136): Guest Log:     "pilotErrorDiag": "",
2024-10-05 00:53:13 (4136): Guest Log:  *** Listing of results directory ***
2024-10-05 00:53:13 (4136): Guest Log: total 227212
2024-10-05 00:53:13 (4136): Guest Log: -rw-r--r--. 1 atlas atlas    484599 Oct  3 08:06 pilot3.tar.gz
2024-10-05 00:53:13 (4136): Guest Log: -rwx------. 1 atlas atlas     33814 Oct  3 08:22 runpilot2-wrapper.sh
2024-10-05 00:53:13 (4136): Guest Log: -rw-r--r--. 1 atlas atlas      5653 Oct  3 08:22 queuedata.json
2024-10-05 00:53:13 (4136): Guest Log: -rwxr-xr-x. 1 atlas atlas      9007 Oct  4 16:09 init_data.xml
2024-10-05 00:53:13 (4136): Guest Log: -rwxr-xr-x. 1 atlas atlas    498156 Oct  4 16:09 input.tar.gz
2024-10-05 00:53:13 (4136): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 Oct  4 16:09 start_atlas.sh
2024-10-05 00:53:13 (4136): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct  4 16:09 EVNT.41481137._000011.pool.root.1 -> /data/./ATLAS.root_0
2024-10-05 00:53:13 (4136): Guest Log: -rw-r--r--. 1 atlas atlas      2539 Oct  4 16:10 pandaJob.out
2024-10-05 00:53:13 (4136): Guest Log: -rw-------. 1 atlas atlas       424 Oct  4 16:10 setup.sh.local
2024-10-05 00:53:13 (4136): Guest Log: -rw-------. 1 atlas atlas   1024566 Oct  4 16:11 agis_schedconf.cvmfs.json
2024-10-05 00:53:13 (4136): Guest Log: drwx------. 4 atlas atlas      4096 Oct  4 16:12 pilot3
2024-10-05 00:53:13 (4136): Guest Log: -rw-------. 1 atlas atlas 224433132 Oct  4 21:51 HITS.41481139._000768.pool.root.1
2024-10-05 00:53:13 (4136): Guest Log: -rw-------. 1 atlas atlas        95 Oct  4 21:52 pilot_heartbeat.json
2024-10-05 00:53:13 (4136): Guest Log: -rw-------. 1 atlas atlas      1035 Oct  4 21:52 memory_monitor_summary.json
2024-10-05 00:53:13 (4136): Guest Log: -rw-------. 1 atlas atlas   1615815 Oct  4 21:52 agis_ddmendpoints.agis.ALL.json
2024-10-05 00:53:13 (4136): Guest Log: -rw-------. 1 atlas atlas    380584 Oct  4 21:52 log.41481139._000768.job.log.tgz.1
2024-10-05 00:53:13 (4136): Guest Log: -rw-------. 1 atlas atlas      7743 Oct  4 21:52 heartbeat.json
2024-10-05 00:53:13 (4136): Guest Log: -rw-------. 1 atlas atlas      4343 Oct  4 21:53 pilotlog.txt
2024-10-05 00:53:13 (4136): Guest Log: -rw-------. 1 atlas atlas   1835494 Oct  4 21:53 log.41481139._000768.job.log.1
2024-10-05 00:53:13 (4136): Guest Log: -rw-------. 1 atlas atlas       357 Oct  4 21:53 output.list
2024-10-05 00:53:13 (4136): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct  4 21:53 runtime_log
2024-10-05 00:53:13 (4136): Guest Log: -rw-------. 1 atlas atlas   2232320 Oct  4 21:53 result.tar.gz
2024-10-05 00:53:13 (4136): Guest Log: -rw-r--r--. 1 atlas atlas     10907 Oct  4 21:53 runtime_log.err
2024-10-05 00:53:13 (4136): Guest Log: -rw-------. 1 atlas atlas       640 Oct  4 21:53 qvMNDmkHWG6n9Rq4apOajLDm4fhM0noT9bVorHsSDm1EcKDmBv9fCo.diag
2024-10-05 00:53:13 (4136): Guest Log: Looking for outputfile HITS.41481139._000768.pool.root.1
2024-10-05 00:53:13 (4136): Guest Log: HITS file was successfully produced
2024-10-05 00:53:13 (4136): Guest Log: -rw-------. 1 atlas atlas 224433132 Oct  4 21:51 /home/atlas/RunAtlas/HITS.41481139._000768.pool.root.1
2024-10-05 00:53:15 (4136): Guest Log: Successfully finished the ATLAS job!
2024-10-05 00:53:15 (4136): Guest Log: Copying the results back to the shared directory!
2024-10-05 00:53:15 (4136): Guest Log:  *** Contents of shared directory: ***
2024-10-05 00:53:15 (4136): Guest Log: total 801776
2024-10-05 00:53:15 (4136): Guest Log: -rwxrwxrwx. 1 root root 593804101 Oct  4 16:08 ATLAS.root_0
2024-10-05 00:53:15 (4136): Guest Log: -rwxrwxrwx. 1 root root 224433132 Oct  4 21:53 HITS.pool.root.1
2024-10-05 00:53:15 (4136): Guest Log: -rwxrwxrwx. 1 root root      9007 Oct  4 16:08 init_data.xml
2024-10-05 00:53:15 (4136): Guest Log: -rwxrwxrwx. 1 root root    498156 Oct  3 11:58 input.tar.gz
2024-10-05 00:53:15 (4136): Guest Log: -rwxrwxrwx. 1 root root   2232320 Oct  4 21:53 result.tar.gz
2024-10-05 00:53:15 (4136): Guest Log: -rwxrwxrwx. 1 root root     17537 Oct  3 11:58 start_atlas.sh
2024-10-05 00:53:15 (4136): Guest Log:  *** Success! Shutting down the machine. ***
2024-10-05 00:53:15 (4136): VM Completion File Detected.
2024-10-05 00:53:15 (4136): Powering off VM.
2024-10-05 00:53:16 (4136): Successfully stopped VM.
2024-10-05 00:53:16 (4136): Deregistering VM. (boinc_5245e92d900abdeb, slot#8)
2024-10-05 00:53:16 (4136): Removing network bandwidth throttle group from VM.
2024-10-05 00:53:16 (4136): Removing VM from VirtualBox.
00:53:21 (4136): called boinc_finish(0)

</stderr_txt>
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