Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2024-10-03 12:50:58 (40480): Detected: vboxwrapper 26206
2024-10-03 12:50:58 (40480): Detected: BOINC client v8.0.2
2024-10-03 12:50:58 (40480): Detected: VirtualBox VboxManage Interface (Version: 7.0.18)
2024-10-03 12:50:59 (40480): Successfully copied 'init_data.xml' to the shared directory.
2024-10-03 12:50:59 (40480): Create VM. (boinc_ac36fc7f078f2846, slot#24)
2024-10-03 12:51:00 (40480): Setting Memory Size for VM. (4800MB)
2024-10-03 12:51:00 (40480): Setting CPU Count for VM. (8)
2024-10-03 12:51:00 (40480): Setting Chipset Options for VM.
2024-10-03 12:51:00 (40480): Setting Graphics Controller Options for VM.
2024-10-03 12:51:01 (40480): Setting Boot Options for VM.
2024-10-03 12:51:01 (40480): Setting Network Configuration for NAT.
2024-10-03 12:51:01 (40480): Enabling VM Network Access.
2024-10-03 12:51:02 (40480): Disabling USB Support for VM.
2024-10-03 12:51:02 (40480): Disabling COM Port Support for VM.
2024-10-03 12:51:02 (40480): Disabling LPT Port Support for VM.
2024-10-03 12:51:02 (40480): Disabling Audio Support for VM.
2024-10-03 12:51:03 (40480): Disabling Clipboard Support for VM.
2024-10-03 12:51:03 (40480): Disabling Drag and Drop Support for VM.
2024-10-03 12:51:03 (40480): Adding storage controller(s) to VM.
2024-10-03 12:51:03 (40480): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-10-03 12:51:04 (40480): Adding VirtualBox Guest Additions to VM.
2024-10-03 12:51:04 (40480): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-10-03 12:51:04 (40480): forwarding host port 56884 to guest port 80
2024-10-03 12:51:05 (40480): Enabling remote desktop for VM.
2024-10-03 12:51:05 (40480): Required extension pack not installed, remote desktop not enabled.
2024-10-03 12:51:05 (40480): Enabling shared directory for VM.
2024-10-03 12:51:05 (40480): Starting VM using VBoxManage interface. (boinc_ac36fc7f078f2846, slot#24)
2024-10-03 12:51:13 (40480): Successfully started VM. (PID = '45972')
2024-10-03 12:51:13 (40480): Reporting VM Process ID to BOINC.
2024-10-03 12:51:13 (40480): Guest Log: BIOS: VirtualBox 7.0.18
2024-10-03 12:51:13 (40480): Guest Log: CPUID EDX: 0x178bfbff
2024-10-03 12:51:13 (40480): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-10-03 12:51:13 (40480): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-10-03 12:51:13 (40480): VM state change detected. (old = 'poweredoff', new = 'running')
2024-10-03 12:51:13 (40480): Detected: Web Application Enabled (http://localhost:56884)
2024-10-03 12:51:13 (40480): Preference change detected
2024-10-03 12:51:13 (40480): Setting CPU throttle for VM. (100%)
2024-10-03 12:51:13 (40480): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 900 seconds))
2024-10-03 12:51:15 (40480): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-10-03 12:51:15 (40480): Guest Log: BIOS: Booting from Hard Disk...
2024-10-03 12:51:18 (40480): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-10-03 12:51:18 (40480): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-10-03 12:51:18 (40480): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-10-03 12:51:18 (40480): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-10-03 12:51:18 (40480): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-10-03 12:51:18 (40480): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-10-03 12:51:18 (40480): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-10-03 12:51:18 (40480): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-10-03 12:51:18 (40480): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-10-03 12:51:18 (40480): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-10-03 12:51:18 (40480): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-10-03 12:51:18 (40480): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-10-03 12:51:18 (40480): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-10-03 12:51:18 (40480): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-10-03 12:51:18 (40480): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-10-03 12:51:18 (40480): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-10-03 12:51:18 (40480): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-10-03 12:51:18 (40480): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-10-03 12:51:18 (40480): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-10-03 12:51:18 (40480): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-10-03 12:51:18 (40480): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-10-03 12:51:18 (40480): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-10-03 12:51:18 (40480): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-10-03 12:51:18 (40480): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-10-03 12:51:18 (40480): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-10-03 12:51:18 (40480): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-10-03 12:51:18 (40480): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-10-03 12:51:18 (40480): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-10-03 12:51:18 (40480): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-10-03 12:51:18 (40480): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-10-03 12:51:18 (40480): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-10-03 12:51:18 (40480): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-10-03 12:51:30 (40480): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-10-03 12:51:30 (40480): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-10-03 12:51:41 (40480): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-10-03 12:51:41 (40480): Guest Log: 00:00:00.000425 main     Log opened 2024-10-03T12:51:39.425509000Z
2024-10-03 12:51:41 (40480): Guest Log: 00:00:00.000735 main     OS Product: Linux
2024-10-03 12:51:41 (40480): Guest Log: 00:00:00.000804 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-10-03 12:51:41 (40480): Guest Log: 00:00:00.000878 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-10-03 12:51:41 (40480): Guest Log: 00:00:00.000941 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-10-03 12:51:41 (40480): Guest Log: 00:00:00.000944 main     Process ID: 1370
2024-10-03 12:51:41 (40480): Guest Log: 00:00:00.000945 main     Package type: LINUX_64BITS_GENERIC
2024-10-03 12:51:41 (40480): Guest Log: 00:00:00.002760 main     5.2.32 r132073 started. Verbose level = 0
2024-10-03 12:51:41 (40480): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-10-03 12:51:41 (40480): Guest Log: [INFO] Mounting shared directory
2024-10-03 12:51:41 (40480): Guest Log: [INFO] Checking for init_data.xml
2024-10-03 12:51:48 (40480): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-10-03 12:51:48 (40480): Guest Log: [INFO] Detected branch: prod
2024-10-03 12:51:48 (40480): Guest Log: This is the prod version of the ATLAS job wrapper
2024-10-03 12:51:48 (40480): Guest Log: Copying input files
2024-10-03 12:51:51 (40480): Guest Log: Copied input files into RunAtlas.
2024-10-03 12:51:51 (40480): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-10-03 12:51:51 (40480): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-10-03 12:51:51 (40480): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-10-03 12:51:51 (40480): Guest Log: Further information can be found at the LHC@home message board.
2024-10-03 12:51:51 (40480): Guest Log: 00:00:10.040470 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 712 358 000ns (GuestNow=1 727 952 710 719 050 000 ns GuestLast=1 727 959 899 431 408 000 ns fSetTimeLastLoop=true )
2024-10-03 12:52:00 (40480): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-10-03 12:52:00 (40480): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-10-03 12:52:00 (40480): Guest Log: 2.6.3.0 1649 0 30192 137924 4 1 3117398 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-10-03 12:52:01 (40480): Guest Log: copied the webapp to /var/www
2024-10-03 12:52:01 (40480): Guest Log: ATHENA_PROC_NUMBER=8
2024-10-03 12:52:01 (40480): Guest Log: ATHENA_CORE_NUMBER=8
2024-10-03 12:52:01 (40480): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-10-03 12:52:02 (40480): Guest Log:  *** Starting ATLAS job. (PandaID=6355172634 taskID=41491264) ***
2024-10-03 14:31:21 (40480): Status Report: Elapsed Time: '6000.000000'
2024-10-03 14:31:21 (40480): Status Report: CPU Time: '33537.515625'
2024-10-03 16:11:31 (40480): Status Report: Elapsed Time: '12000.000000'
2024-10-03 16:11:31 (40480): Status Report: CPU Time: '75988.109375'
2024-10-03 17:51:40 (40480): Status Report: Elapsed Time: '18000.000000'
2024-10-03 17:51:40 (40480): Status Report: CPU Time: '118455.671875'
2024-10-03 19:31:49 (40480): Status Report: Elapsed Time: '24000.000000'
2024-10-03 19:31:49 (40480): Status Report: CPU Time: '160879.796875'
2024-10-03 21:11:58 (40480): Status Report: Elapsed Time: '30000.000000'
2024-10-03 21:11:58 (40480): Status Report: CPU Time: '205775.968750'
2024-10-03 21:41:28 (40480): Guest Log:  *** Job finished ***
2024-10-03 21:41:28 (40480): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-10-03 21:41:28 (40480): Guest Log: 2024-10-03 19:41:11,948 | INFO     | [data] queue_monitor thread has finished
2024-10-03 21:41:28 (40480): Guest Log: 2024-10-03 19:41:18,707 | INFO     | job.realtimelogging is not enabled
2024-10-03 21:41:28 (40480): Guest Log: 2024-10-03 19:41:19,718 | INFO     | [payload] run_realtimelog thread has finished
2024-10-03 21:41:28 (40480): Guest Log: 2024-10-03 19:41:22,003 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140343883122496)>', '<ExcThread(monitor, started 140343148275456)>']
2024-10-03 21:41:28 (40480): Guest Log: 2024-10-03 19:41:22,041 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-10-03 21:41:28 (40480): Guest Log: 2024-10-03 19:41:22,041 | INFO     | [monitor] control thread has ended
2024-10-03 21:41:28 (40480): Guest Log: 2024-10-03 19:41:27,009 | INFO     | all workflow threads have been joined
2024-10-03 21:41:28 (40480): Guest Log: 2024-10-03 19:41:27,009 | INFO     | end of generic workflow (traces error code: 0)
2024-10-03 21:41:28 (40480): Guest Log: 2024-10-03 19:41:27,009 | INFO     | traces error code: 0
2024-10-03 21:41:28 (40480): Guest Log: 2024-10-03 19:41:27,009 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-10-03 21:41:28 (40480): Guest Log: 2024-10-03 19:41:27,166 [wrapper] ==== pilot stdout END ====
2024-10-03 21:41:28 (40480): Guest Log: 2024-10-03 19:41:27,175 [wrapper] ==== wrapper stdout RESUME ====
2024-10-03 21:41:28 (40480): Guest Log: 2024-10-03 19:41:27,186 [wrapper] pilotpid: 6032
2024-10-03 21:41:28 (40480): Guest Log: 2024-10-03 19:41:27,195 [wrapper] Pilot exit status: 0
2024-10-03 21:41:28 (40480): Guest Log: 2024-10-03 19:41:27,300 [wrapper] pandaids: 6355172634
2024-10-03 21:41:28 (40480): Guest Log: 2024-10-03 19:41:27,356 [wrapper] cleanup supervisor_pilot 10876 6033
2024-10-03 21:41:28 (40480): Guest Log: 2024-10-03 19:41:27,365 [wrapper] Test setup, not cleaning
2024-10-03 21:41:28 (40480): Guest Log: 2024-10-03 19:41:27,375 [wrapper] ==== wrapper stdout END ====
2024-10-03 21:41:28 (40480): Guest Log: 2024-10-03 19:41:27,383 [wrapper] ==== wrapper stderr END ====
2024-10-03 21:41:28 (40480): Guest Log: 2024-10-03 19:41:27,397 [wrapper] apfmon messages muted
2024-10-03 21:41:28 (40480): Guest Log:  *** Error codes and diagnostics ***
2024-10-03 21:41:28 (40480): Guest Log:     "exeErrorCode": 0,
2024-10-03 21:41:28 (40480): Guest Log:     "exeErrorDiag": "",
2024-10-03 21:41:28 (40480): Guest Log:     "pilotErrorCode": 0,
2024-10-03 21:41:28 (40480): Guest Log:     "pilotErrorDiag": "",
2024-10-03 21:41:28 (40480): Guest Log:  *** Listing of results directory ***
2024-10-03 21:41:28 (40480): Guest Log: total 277784
2024-10-03 21:41:28 (40480): Guest Log: -rw-r--r--. 1 atlas atlas      5653 Oct  3 08:05 queuedata.json
2024-10-03 21:41:28 (40480): Guest Log: -rwx------. 1 atlas atlas     33814 Oct  3 08:06 runpilot2-wrapper.sh
2024-10-03 21:41:28 (40480): Guest Log: -rw-r--r--. 1 atlas atlas    484599 Oct  3 08:06 pilot3.tar.gz
2024-10-03 21:41:28 (40480): Guest Log: -rwxr-xr-x. 1 atlas atlas      9144 Oct  3 10:51 init_data.xml
2024-10-03 21:41:28 (40480): Guest Log: -rwxr-xr-x. 1 atlas atlas    498185 Oct  3 10:51 input.tar.gz
2024-10-03 21:41:28 (40480): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 Oct  3 10:51 start_atlas.sh
2024-10-03 21:41:28 (40480): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct  3 10:51 EVNT.41491262._000044.pool.root.1 -> /data/./ATLAS.root_0
2024-10-03 21:41:28 (40480): Guest Log: -rw-r--r--. 1 atlas atlas      2641 Oct  3 10:52 pandaJob.out
2024-10-03 21:41:28 (40480): Guest Log: -rw-------. 1 atlas atlas       424 Oct  3 10:52 setup.sh.local
2024-10-03 21:41:28 (40480): Guest Log: -rw-------. 1 atlas atlas   1024603 Oct  3 10:52 agis_schedconf.cvmfs.json
2024-10-03 21:41:28 (40480): Guest Log: drwx------. 4 atlas atlas      4096 Oct  3 10:53 pilot3
2024-10-03 21:41:28 (40480): Guest Log: -rw-------. 1 atlas atlas 273289725 Oct  3 19:39 HITS.41491264._001562.pool.root.1
2024-10-03 21:41:28 (40480): Guest Log: -rw-------. 1 atlas atlas      1034 Oct  3 19:40 memory_monitor_summary.json
2024-10-03 21:41:28 (40480): Guest Log: -rw-------. 1 atlas atlas        95 Oct  3 19:40 pilot_heartbeat.json
2024-10-03 21:41:28 (40480): Guest Log: -rw-------. 1 atlas atlas   1615815 Oct  3 19:40 agis_ddmendpoints.agis.ALL.json
2024-10-03 21:41:28 (40480): Guest Log: -rw-------. 1 atlas atlas    556009 Oct  3 19:40 log.41491264._001562.job.log.tgz.1
2024-10-03 21:41:28 (40480): Guest Log: -rw-------. 1 atlas atlas      7743 Oct  3 19:41 heartbeat.json
2024-10-03 21:41:28 (40480): Guest Log: -rw-------. 1 atlas atlas      4466 Oct  3 19:41 pilotlog.txt
2024-10-03 21:41:28 (40480): Guest Log: -rw-------. 1 atlas atlas   3123366 Oct  3 19:41 log.41491264._001562.job.log.1
2024-10-03 21:41:28 (40480): Guest Log: -rw-------. 1 atlas atlas       357 Oct  3 19:41 output.list
2024-10-03 21:41:28 (40480): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct  3 19:41 runtime_log
2024-10-03 21:41:28 (40480): Guest Log: -rw-------. 1 atlas atlas   3696640 Oct  3 19:41 result.tar.gz
2024-10-03 21:41:28 (40480): Guest Log: -rw-r--r--. 1 atlas atlas     10928 Oct  3 19:41 runtime_log.err
2024-10-03 21:41:28 (40480): Guest Log: -rw-------. 1 atlas atlas       649 Oct  3 19:41 oBKNDmm1VG6n9Rq4apOajLDm4fhM0noT9bVorHsSDmzDcKDmeWRGdm.diag
2024-10-03 21:41:28 (40480): Guest Log: Looking for outputfile HITS.41491264._001562.pool.root.1
2024-10-03 21:41:28 (40480): Guest Log: HITS file was successfully produced
2024-10-03 21:41:28 (40480): Guest Log: -rw-------. 1 atlas atlas 273289725 Oct  3 19:39 /home/atlas/RunAtlas/HITS.41491264._001562.pool.root.1
2024-10-03 21:41:30 (40480): Guest Log: Successfully finished the ATLAS job!
2024-10-03 21:41:30 (40480): Guest Log: Copying the results back to the shared directory!
2024-10-03 21:41:30 (40480): Guest Log:  *** Contents of shared directory: ***
2024-10-03 21:41:30 (40480): Guest Log: total 579308
2024-10-03 21:41:30 (40480): Guest Log: -rwxrwxrwx. 1 root root 315683907 Oct  3 10:50 ATLAS.root_0
2024-10-03 21:41:30 (40480): Guest Log: -rwxrwxrwx. 1 root root 273289725 Oct  3 19:41 HITS.pool.root.1
2024-10-03 21:41:30 (40480): Guest Log: -rwxrwxrwx. 1 root root      9144 Oct  3 10:50 init_data.xml
2024-10-03 21:41:30 (40480): Guest Log: -rwxrwxrwx. 1 root root    498185 Oct  3 10:50 input.tar.gz
2024-10-03 21:41:30 (40480): Guest Log: -rwxrwxrwx. 1 root root   3696640 Oct  3 19:41 result.tar.gz
2024-10-03 21:41:30 (40480): Guest Log: -rwxrwxrwx. 1 root root     17537 Oct  3 10:50 start_atlas.sh
2024-10-03 21:41:30 (40480): Guest Log:  *** Success! Shutting down the machine. ***
2024-10-03 21:41:30 (40480): VM Completion File Detected.
2024-10-03 21:41:30 (40480): Powering off VM.
2024-10-03 21:41:31 (40480): Successfully stopped VM.
2024-10-03 21:41:31 (40480): Deregistering VM. (boinc_ac36fc7f078f2846, slot#24)
2024-10-03 21:41:31 (40480): Removing network bandwidth throttle group from VM.
2024-10-03 21:41:31 (40480): Removing VM from VirtualBox.
21:41:37 (40480): called boinc_finish(0)

</stderr_txt>
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