Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
2024-10-03 08:00:56 (2209010): Detected: vboxwrapper 26206
2024-10-03 08:00:56 (2209010): Detected: BOINC client v7.16.6
2024-10-03 08:00:58 (2209010): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2024-10-03 08:00:58 (2209010): Successfully copied 'init_data.xml' to the shared directory.
2024-10-03 08:00:58 (2209010): Create VM. (boinc_951af95d6c30742b, slot#1)
2024-10-03 08:00:58 (2209010): Setting Memory Size for VM. (4800MB)
2024-10-03 08:00:58 (2209010): Setting CPU Count for VM. (8)
2024-10-03 08:00:59 (2209010): Setting Chipset Options for VM.
2024-10-03 08:00:59 (2209010): Setting Graphics Controller Options for VM.
2024-10-03 08:00:59 (2209010): Setting Boot Options for VM.
2024-10-03 08:00:59 (2209010): Setting Network Configuration for NAT.
2024-10-03 08:00:59 (2209010): Enabling VM Network Access.
2024-10-03 08:00:59 (2209010): Disabling USB Support for VM.
2024-10-03 08:00:59 (2209010): Disabling COM Port Support for VM.
2024-10-03 08:00:59 (2209010): Disabling LPT Port Support for VM.
2024-10-03 08:01:00 (2209010): Disabling Audio Support for VM.
2024-10-03 08:01:00 (2209010): Disabling Clipboard Support for VM.
2024-10-03 08:01:00 (2209010): Disabling Drag and Drop Support for VM.
2024-10-03 08:01:00 (2209010): Adding storage controller(s) to VM.
2024-10-03 08:01:00 (2209010): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-10-03 08:01:01 (2209010): Adding VirtualBox Guest Additions to VM.
2024-10-03 08:01:01 (2209010): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-10-03 08:01:01 (2209010): forwarding host port 39243 to guest port 80
2024-10-03 08:01:01 (2209010): Enabling remote desktop for VM.
2024-10-03 08:01:01 (2209010): Required extension pack not installed, remote desktop not enabled.
2024-10-03 08:01:01 (2209010): Enabling shared directory for VM.
2024-10-03 08:01:02 (2209010): Starting VM using VBoxManage interface. (boinc_951af95d6c30742b, slot#1)
2024-10-03 08:01:04 (2209010): Successfully started VM. (PID = '2211135')
2024-10-03 08:01:04 (2209010): Reporting VM Process ID to BOINC.
2024-10-03 08:01:04 (2209010): Guest Log: BIOS: VirtualBox 6.1.50
2024-10-03 08:01:04 (2209010): Guest Log: CPUID EDX: 0x178bfbff
2024-10-03 08:01:04 (2209010): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-10-03 08:01:04 (2209010): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-10-03 08:01:04 (2209010): VM state change detected. (old = 'poweredoff', new = 'running')
2024-10-03 08:01:04 (2209010): Detected: Web Application Enabled (http://localhost:39243)
2024-10-03 08:01:04 (2209010): Preference change detected
2024-10-03 08:01:04 (2209010): Setting CPU throttle for VM. (100%)
2024-10-03 08:01:06 (2209010): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2024-10-03 08:01:06 (2209010): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-10-03 08:01:06 (2209010): Guest Log: BIOS: Booting from Hard Disk...
2024-10-03 08:01:34 (2209010): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-10-03 08:01:34 (2209010): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-10-03 08:01:34 (2209010): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-10-03 08:01:34 (2209010): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-10-03 08:01:34 (2209010): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-10-03 08:01:34 (2209010): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-10-03 08:01:34 (2209010): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-10-03 08:01:34 (2209010): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-10-03 08:01:34 (2209010): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-10-03 08:01:34 (2209010): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-10-03 08:01:34 (2209010): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-10-03 08:01:34 (2209010): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-10-03 08:01:34 (2209010): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-10-03 08:01:34 (2209010): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-10-03 08:01:34 (2209010): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-10-03 08:01:34 (2209010): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-10-03 08:01:34 (2209010): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-10-03 08:01:34 (2209010): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-10-03 08:01:34 (2209010): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-10-03 08:01:34 (2209010): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-10-03 08:01:34 (2209010): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-10-03 08:01:34 (2209010): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-10-03 08:01:34 (2209010): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-10-03 08:01:34 (2209010): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-10-03 08:01:34 (2209010): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-10-03 08:01:34 (2209010): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-10-03 08:01:34 (2209010): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-10-03 08:01:34 (2209010): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-10-03 08:01:34 (2209010): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-10-03 08:01:34 (2209010): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-10-03 08:01:34 (2209010): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-10-03 08:01:34 (2209010): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-10-03 08:01:44 (2209010): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-10-03 08:01:44 (2209010): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-10-03 08:02:00 (2209010): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-10-03 08:02:00 (2209010): Guest Log: 00:00:00.000395 main     Log opened 2024-10-03T12:01:58.754229000Z
2024-10-03 08:02:00 (2209010): Guest Log: 00:00:00.000649 main     OS Product: Linux
2024-10-03 08:02:00 (2209010): Guest Log: 00:00:00.000754 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-10-03 08:02:00 (2209010): Guest Log: 00:00:00.000821 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-10-03 08:02:00 (2209010): Guest Log: 00:00:00.000886 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-10-03 08:02:00 (2209010): Guest Log: 00:00:00.000888 main     Process ID: 1338
2024-10-03 08:02:00 (2209010): Guest Log: 00:00:00.000889 main     Package type: LINUX_64BITS_GENERIC
2024-10-03 08:02:00 (2209010): Guest Log: 00:00:00.005508 main     5.2.32 r132073 started. Verbose level = 0
2024-10-03 08:02:01 (2209010): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-10-03 08:02:01 (2209010): Guest Log: [INFO] Mounting shared directory
2024-10-03 08:02:01 (2209010): Guest Log: [INFO] Checking for init_data.xml
2024-10-03 08:02:07 (2209010): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-10-03 08:02:07 (2209010): Guest Log: [INFO] Detected branch: prod
2024-10-03 08:02:07 (2209010): Guest Log: This is the prod version of the ATLAS job wrapper
2024-10-03 08:02:07 (2209010): Guest Log: Copying input files
2024-10-03 08:02:21 (2209010): Guest Log: Copied input files into RunAtlas.
2024-10-03 08:02:21 (2209010): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-10-03 08:02:21 (2209010): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-10-03 08:02:21 (2209010): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-10-03 08:02:21 (2209010): Guest Log: Further information can be found at the LHC@home message board.
2024-10-03 08:02:37 (2209010): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-10-03 08:02:37 (2209010): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-10-03 08:02:37 (2209010): Guest Log: 2.6.3.0 1631 0 30160 137926 3 1 3117398 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2024-10-03 08:02:40 (2209010): Guest Log: copied the webapp to /var/www
2024-10-03 08:02:40 (2209010): Guest Log: ATHENA_PROC_NUMBER=8
2024-10-03 08:02:40 (2209010): Guest Log: ATHENA_CORE_NUMBER=8
2024-10-03 08:02:40 (2209010): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-10-03 08:02:40 (2209010): Guest Log:  *** Starting ATLAS job. (PandaID=6355131307 taskID=41481181) ***
2024-10-03 09:40:05 (2209010): Status Report: Elapsed Time: '6000.639840'
2024-10-03 09:40:05 (2209010): Status Report: CPU Time: '34289.780000'
2024-10-03 11:19:06 (2209010): Status Report: Elapsed Time: '12000.639840'
2024-10-03 11:19:06 (2209010): Status Report: CPU Time: '79421.610000'
2024-10-03 12:41:39 (2209010): Preference change detected
2024-10-03 12:41:39 (2209010): Setting CPU throttle for VM. (100%)
2024-10-03 12:41:39 (2209010): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2024-10-03 12:58:07 (2209010): Status Report: Elapsed Time: '18000.639840'
2024-10-03 12:58:07 (2209010): Status Report: CPU Time: '124560.430000'
2024-10-03 14:24:14 (2209010): Guest Log:  *** Job finished ***
2024-10-03 14:24:14 (2209010): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-10-03 14:24:14 (2209010): Guest Log: 2024-10-03 18:23:56,353 | INFO     | [data] queue_monitor thread has finished
2024-10-03 14:24:14 (2209010): Guest Log: 2024-10-03 18:24:02,157 | INFO     | job.realtimelogging is not enabled
2024-10-03 14:24:14 (2209010): Guest Log: 2024-10-03 18:24:03,169 | INFO     | [payload] run_realtimelog thread has finished
2024-10-03 14:24:14 (2209010): Guest Log: 2024-10-03 18:24:04,223 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140008005830464)>', '<ExcThread(monitor, started 140007192909568)>']
2024-10-03 14:24:14 (2209010): Guest Log: 2024-10-03 18:24:04,734 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-10-03 14:24:14 (2209010): Guest Log: 2024-10-03 18:24:04,734 | INFO     | [monitor] control thread has ended
2024-10-03 14:24:14 (2209010): Guest Log: 2024-10-03 18:24:09,231 | INFO     | all workflow threads have been joined
2024-10-03 14:24:14 (2209010): Guest Log: 2024-10-03 18:24:09,231 | INFO     | end of generic workflow (traces error code: 0)
2024-10-03 14:24:14 (2209010): Guest Log: 2024-10-03 18:24:09,232 | INFO     | traces error code: 0
2024-10-03 14:24:14 (2209010): Guest Log: 2024-10-03 18:24:09,232 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-10-03 14:24:14 (2209010): Guest Log: 2024-10-03 18:24:09,475 [wrapper] ==== pilot stdout END ====
2024-10-03 14:24:14 (2209010): Guest Log: 2024-10-03 18:24:09,491 [wrapper] ==== wrapper stdout RESUME ====
2024-10-03 14:24:14 (2209010): Guest Log: 2024-10-03 18:24:09,507 [wrapper] pilotpid: 6011
2024-10-03 14:24:14 (2209010): Guest Log: 2024-10-03 18:24:09,522 [wrapper] Pilot exit status: 0
2024-10-03 14:24:14 (2209010): Guest Log: 2024-10-03 18:24:09,632 [wrapper] pandaids: 6355131307
2024-10-03 14:24:14 (2209010): Guest Log: 2024-10-03 18:24:09,741 [wrapper] cleanup supervisor_pilot 28881 6012
2024-10-03 14:24:14 (2209010): Guest Log: 2024-10-03 18:24:09,757 [wrapper] Test setup, not cleaning
2024-10-03 14:24:14 (2209010): Guest Log: 2024-10-03 18:24:09,773 [wrapper] ==== wrapper stdout END ====
2024-10-03 14:24:14 (2209010): Guest Log: 2024-10-03 18:24:09,789 [wrapper] ==== wrapper stderr END ====
2024-10-03 14:24:14 (2209010): Guest Log: 2024-10-03 18:24:09,824 [wrapper] apfmon messages muted
2024-10-03 14:24:14 (2209010): Guest Log:  *** Error codes and diagnostics ***
2024-10-03 14:24:14 (2209010): Guest Log:     "exeErrorCode": 0,
2024-10-03 14:24:14 (2209010): Guest Log:     "exeErrorDiag": "",
2024-10-03 14:24:14 (2209010): Guest Log:     "pilotErrorCode": 0,
2024-10-03 14:24:14 (2209010): Guest Log:     "pilotErrorDiag": "",
2024-10-03 14:24:14 (2209010): Guest Log:  *** Listing of results directory ***
2024-10-03 14:24:14 (2209010): Guest Log: total 264256
2024-10-03 14:24:14 (2209010): Guest Log: -rwx------. 1 atlas atlas     33814 Oct  3 06:57 runpilot2-wrapper.sh
2024-10-03 14:24:14 (2209010): Guest Log: -rw-r--r--. 1 atlas atlas    484599 Oct  3 07:00 pilot3.tar.gz
2024-10-03 14:24:14 (2209010): Guest Log: -rw-r--r--. 1 atlas atlas      5653 Oct  3 07:01 queuedata.json
2024-10-03 14:24:14 (2209010): Guest Log: -rw-r--r--. 1 atlas atlas     17537 Oct  3 12:02 start_atlas.sh
2024-10-03 14:24:14 (2209010): Guest Log: -rw-r--r--. 1 atlas atlas      5902 Oct  3 12:02 init_data.xml
2024-10-03 14:24:14 (2209010): Guest Log: -rw-r--r--. 1 atlas atlas    498177 Oct  3 12:02 input.tar.gz
2024-10-03 14:24:14 (2209010): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct  3 12:02 EVNT.41466530._000113.pool.root.1 -> /data/./ATLAS.root_0
2024-10-03 14:24:14 (2209010): Guest Log: -rw-r--r--. 1 atlas atlas      2536 Oct  3 12:02 pandaJob.out
2024-10-03 14:24:14 (2209010): Guest Log: -rw-------. 1 atlas atlas       424 Oct  3 12:02 setup.sh.local
2024-10-03 14:24:14 (2209010): Guest Log: -rw-------. 1 atlas atlas   1024595 Oct  3 12:03 agis_schedconf.cvmfs.json
2024-10-03 14:24:14 (2209010): Guest Log: drwx------. 4 atlas atlas      4096 Oct  3 12:03 pilot3
2024-10-03 14:24:14 (2209010): Guest Log: -rw-------. 1 atlas atlas 262145728 Oct  3 18:22 HITS.41481181._007265.pool.root.1
2024-10-03 14:24:14 (2209010): Guest Log: -rw-------. 1 atlas atlas      1042 Oct  3 18:23 memory_monitor_summary.json
2024-10-03 14:24:14 (2209010): Guest Log: -rw-------. 1 atlas atlas        95 Oct  3 18:23 pilot_heartbeat.json
2024-10-03 14:24:14 (2209010): Guest Log: -rw-------. 1 atlas atlas   1615815 Oct  3 18:23 agis_ddmendpoints.agis.ALL.json
2024-10-03 14:24:14 (2209010): Guest Log: -rw-------. 1 atlas atlas    477460 Oct  3 18:23 log.41481181._007265.job.log.tgz.1
2024-10-03 14:24:14 (2209010): Guest Log: -rw-------. 1 atlas atlas      7771 Oct  3 18:23 heartbeat.json
2024-10-03 14:24:14 (2209010): Guest Log: -rw-------. 1 atlas atlas      4529 Oct  3 18:24 pilotlog.txt
2024-10-03 14:24:14 (2209010): Guest Log: -rw-------. 1 atlas atlas   1850780 Oct  3 18:24 log.41481181._007265.job.log.1
2024-10-03 14:24:14 (2209010): Guest Log: -rw-------. 1 atlas atlas       357 Oct  3 18:24 output.list
2024-10-03 14:24:14 (2209010): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct  3 18:24 runtime_log
2024-10-03 14:24:14 (2209010): Guest Log: -rw-------. 1 atlas atlas   2344960 Oct  3 18:24 result.tar.gz
2024-10-03 14:24:14 (2209010): Guest Log: -rw-------. 1 atlas atlas       653 Oct  3 18:24 rV1MDmPxUG6n7OlckoGmwREmGgkVDo1bjSoqOlfODmUItKDmtVb7bn.diag
2024-10-03 14:24:14 (2209010): Guest Log: -rw-r--r--. 1 atlas atlas     10937 Oct  3 18:24 runtime_log.err
2024-10-03 14:24:14 (2209010): Guest Log: Looking for outputfile HITS.41481181._007265.pool.root.1
2024-10-03 14:24:14 (2209010): Guest Log: HITS file was successfully produced
2024-10-03 14:24:14 (2209010): Guest Log: -rw-------. 1 atlas atlas 262145728 Oct  3 18:22 /home/atlas/RunAtlas/HITS.41481181._007265.pool.root.1
2024-10-03 14:24:15 (2209010): Guest Log: Successfully finished the ATLAS job!
2024-10-03 14:24:15 (2209010): Guest Log: Copying the results back to the shared directory!
2024-10-03 14:24:15 (2209010): Guest Log:  *** Contents of shared directory: ***
2024-10-03 14:24:15 (2209010): Guest Log: total 622456
2024-10-03 14:24:15 (2209010): Guest Log: -rw-r--r--. 1 root root 634513570 Oct  3 12:00 ATLAS.root_0
2024-10-03 14:24:15 (2209010): Guest Log: -rw-r--r--. 1 root root      5902 Oct  3 12:00 init_data.xml
2024-10-03 14:24:15 (2209010): Guest Log: -rw-r--r--. 1 root root    498177 Oct  3 12:00 input.tar.gz
2024-10-03 14:24:15 (2209010): Guest Log: -rw-r--r--. 1 root root   2344960 Oct  3 18:24 result.tar.gz
2024-10-03 14:24:15 (2209010): Guest Log: -rw-r--r--. 1 root root     17537 Oct  3 12:00 start_atlas.sh
2024-10-03 14:24:15 (2209010): Guest Log:  *** Success! Shutting down the machine. ***
2024-10-03 14:24:15 (2209010): VM Completion File Detected.
2024-10-03 14:24:15 (2209010): Powering off VM.
2024-10-03 14:24:15 (2209010): Successfully stopped VM.
2024-10-03 14:24:15 (2209010): Deregistering VM. (boinc_951af95d6c30742b, slot#1)
2024-10-03 14:24:15 (2209010): Removing network bandwidth throttle group from VM.
2024-10-03 14:24:16 (2209010): Removing VM from VirtualBox.
14:24:21 (2209010): called boinc_finish(0)

</stderr_txt>
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