Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2024-10-02 19:59:09 (14696): Detected: vboxwrapper 26206
2024-10-02 19:59:09 (14696): Detected: BOINC client v8.0.2
2024-10-02 19:59:09 (14696): Detected: VirtualBox VboxManage Interface (Version: 7.0.20)
2024-10-02 19:59:10 (14696): Successfully copied 'init_data.xml' to the shared directory.
2024-10-02 19:59:10 (14696): Create VM. (boinc_2db92df7cff9505d, slot#1)
2024-10-02 19:59:11 (14696): Setting Memory Size for VM. (4400MB)
2024-10-02 19:59:11 (14696): Setting CPU Count for VM. (4)
2024-10-02 19:59:11 (14696): Setting Chipset Options for VM.
2024-10-02 19:59:12 (14696): Setting Graphics Controller Options for VM.
2024-10-02 19:59:12 (14696): Setting Boot Options for VM.
2024-10-02 19:59:12 (14696): Setting Network Configuration for NAT.
2024-10-02 19:59:12 (14696): Enabling VM Network Access.
2024-10-02 19:59:13 (14696): Disabling USB Support for VM.
2024-10-02 19:59:13 (14696): Disabling COM Port Support for VM.
2024-10-02 19:59:13 (14696): Disabling LPT Port Support for VM.
2024-10-02 19:59:13 (14696): Disabling Audio Support for VM.
2024-10-02 19:59:14 (14696): Disabling Clipboard Support for VM.
2024-10-02 19:59:14 (14696): Disabling Drag and Drop Support for VM.
2024-10-02 19:59:14 (14696): Adding storage controller(s) to VM.
2024-10-02 19:59:14 (14696): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-10-02 19:59:15 (14696): Adding VirtualBox Guest Additions to VM.
2024-10-02 19:59:15 (14696): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-10-02 19:59:15 (14696): forwarding host port 49573 to guest port 80
2024-10-02 19:59:16 (14696): Enabling remote desktop for VM.
2024-10-02 19:59:16 (14696): Required extension pack not installed, remote desktop not enabled.
2024-10-02 19:59:16 (14696): Enabling shared directory for VM.
2024-10-02 19:59:16 (14696): Starting VM using VBoxManage interface. (boinc_2db92df7cff9505d, slot#1)
2024-10-02 19:59:21 (14696): Successfully started VM. (PID = '21004')
2024-10-02 19:59:21 (14696): Reporting VM Process ID to BOINC.
2024-10-02 19:59:21 (14696): Guest Log: BIOS: VirtualBox 7.0.20
2024-10-02 19:59:21 (14696): Guest Log: CPUID EDX: 0x178bfbff
2024-10-02 19:59:21 (14696): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-10-02 19:59:21 (14696): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-10-02 19:59:21 (14696): VM state change detected. (old = 'poweredoff', new = 'running')
2024-10-02 19:59:21 (14696): Detected: Web Application Enabled (http://localhost:49573)
2024-10-02 19:59:21 (14696): Preference change detected
2024-10-02 19:59:21 (14696): Setting CPU throttle for VM. (100%)
2024-10-02 19:59:21 (14696): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 300 seconds) or (Vbox_job.xml: 900 seconds))
2024-10-02 19:59:23 (14696): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-10-02 19:59:23 (14696): Guest Log: BIOS: Booting from Hard Disk...
2024-10-02 19:59:26 (14696): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-10-02 19:59:26 (14696): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-10-02 19:59:26 (14696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-10-02 19:59:26 (14696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-10-02 19:59:26 (14696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-10-02 19:59:26 (14696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-10-02 19:59:26 (14696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-10-02 19:59:26 (14696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-10-02 19:59:26 (14696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-10-02 19:59:26 (14696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-10-02 19:59:26 (14696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-10-02 19:59:26 (14696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-10-02 19:59:26 (14696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-10-02 19:59:26 (14696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-10-02 19:59:26 (14696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-10-02 19:59:26 (14696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-10-02 19:59:26 (14696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-10-02 19:59:26 (14696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-10-02 19:59:26 (14696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-10-02 19:59:26 (14696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-10-02 19:59:26 (14696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-10-02 19:59:26 (14696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-10-02 19:59:26 (14696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-10-02 19:59:26 (14696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-10-02 19:59:26 (14696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-10-02 19:59:26 (14696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-10-02 19:59:26 (14696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-10-02 19:59:26 (14696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-10-02 19:59:26 (14696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-10-02 19:59:26 (14696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-10-02 19:59:26 (14696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-10-02 19:59:26 (14696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-10-02 20:00:32 (14696): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-10-02 20:00:32 (14696): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-10-02 20:00:41 (14696): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-10-02 20:00:41 (14696): Guest Log: 00:00:00.000297 main     Log opened 2024-10-02T20:00:39.194521000Z
2024-10-02 20:00:41 (14696): Guest Log: 00:00:00.000421 main     OS Product: Linux
2024-10-02 20:00:41 (14696): Guest Log: 00:00:00.000456 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-10-02 20:00:41 (14696): Guest Log: 00:00:00.000482 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-10-02 20:00:41 (14696): Guest Log: 00:00:00.000506 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-10-02 20:00:41 (14696): Guest Log: 00:00:00.000507 main     Process ID: 1303
2024-10-02 20:00:41 (14696): Guest Log: 00:00:00.000507 main     Package type: LINUX_64BITS_GENERIC
2024-10-02 20:00:41 (14696): Guest Log: 00:00:00.000962 main     5.2.32 r132073 started. Verbose level = 0
2024-10-02 20:00:41 (14696): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-10-02 20:00:41 (14696): Guest Log: [INFO] Mounting shared directory
2024-10-02 20:00:41 (14696): Guest Log: [INFO] Checking for init_data.xml
2024-10-02 20:00:46 (14696): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-10-02 20:00:46 (14696): Guest Log: [INFO] Detected branch: prod
2024-10-02 20:00:46 (14696): Guest Log: This is the prod version of the ATLAS job wrapper
2024-10-02 20:00:46 (14696): Guest Log: Copying input files
2024-10-02 20:00:47 (14696): Guest Log: Copied input files into RunAtlas.
2024-10-02 20:00:47 (14696): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-10-02 20:00:47 (14696): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-10-02 20:00:47 (14696): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-10-02 20:00:47 (14696): Guest Log: Further information can be found at the LHC@home message board.
2024-10-02 20:00:51 (14696): Guest Log: 00:00:10.002717 timesync vgsvcTimeSyncWorker: Radical guest time change: 25 208 285 321 000ns (GuestNow=1 727 924 447 481 611 000 ns GuestLast=1 727 899 239 196 290 000 ns fSetTimeLastLoop=true )
2024-10-02 20:00:56 (14696): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-10-02 20:00:57 (14696): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-10-02 20:00:57 (14696): Guest Log: 2.6.3.0 1580 0 30192 137913 4 1 3117398 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2024-10-02 20:00:58 (14696): Guest Log: copied the webapp to /var/www
2024-10-02 20:00:58 (14696): Guest Log: ATHENA_PROC_NUMBER=4
2024-10-02 20:00:58 (14696): Guest Log: ATHENA_CORE_NUMBER=4
2024-10-02 20:01:01 (14696): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-10-02 20:01:01 (14696): Guest Log:  *** Starting ATLAS job. (PandaID=6354788542 taskID=41491211) ***
2024-10-02 21:39:48 (14696): Status Report: Elapsed Time: '6000.000000'
2024-10-02 21:39:48 (14696): Status Report: CPU Time: '16563.703125'
2024-10-02 22:00:42 (14696): VM state change detected. (old = 'running', new = 'paused')
2024-10-02 23:00:26 (14696): VM state change detected. (old = 'paused', new = 'running')
2024-10-02 23:00:34 (14696): Guest Log: 02:00:06.672779 timesync vgsvcTimeSyncWorker: Radical host time change: 3 590 717 000 000ns (HostNow=1 727 935 192 902 000 000 ns HostLast=1 727 931 602 185 000 000 ns)
2024-10-02 23:00:44 (14696): Guest Log: 02:00:16.673381 timesync vgsvcTimeSyncWorker: Radical guest time change: 3 558 750 985 000ns (GuestNow=1 727 935 202 902 651 000 ns GuestLast=1 727 931 644 151 666 000 ns fSetTimeLastLoop=true )
2024-10-03 00:19:42 (14696): Status Report: Elapsed Time: '12000.000000'
2024-10-03 00:19:42 (14696): Status Report: CPU Time: '40248.640625'
2024-10-03 01:53:15 (14696): Guest Log:  *** Job finished ***
2024-10-03 01:53:15 (14696): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-10-03 01:53:15 (14696): Guest Log: 2024-10-03 08:52:26,223 | INFO     | [payload] validate_post thread has finished
2024-10-03 01:53:15 (14696): Guest Log: 2024-10-03 08:52:26,635 | INFO     | [data] copytool_out thread has finished
2024-10-03 01:53:15 (14696): Guest Log: 2024-10-03 08:52:28,526 | INFO     | [data] queue_monitor thread has finished
2024-10-03 01:53:15 (14696): Guest Log: 2024-10-03 08:52:29,645 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139656255887168)>', '<ExcThread(monitor, started 139655542462208)>']
2024-10-03 01:53:15 (14696): Guest Log: 2024-10-03 08:52:29,781 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-10-03 01:53:15 (14696): Guest Log: 2024-10-03 08:52:29,781 | INFO     | [monitor] control thread has ended
2024-10-03 01:53:15 (14696): Guest Log: 2024-10-03 08:52:34,651 | INFO     | all workflow threads have been joined
2024-10-03 01:53:15 (14696): Guest Log: 2024-10-03 08:52:34,651 | INFO     | end of generic workflow (traces error code: 0)
2024-10-03 01:53:15 (14696): Guest Log: 2024-10-03 08:52:34,652 | INFO     | traces error code: 0
2024-10-03 01:53:15 (14696): Guest Log: 2024-10-03 08:52:34,652 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-10-03 01:53:15 (14696): Guest Log: 2024-10-03 08:52:34,797 [wrapper] ==== pilot stdout END ====
2024-10-03 01:53:15 (14696): Guest Log: 2024-10-03 08:52:34,800 [wrapper] ==== wrapper stdout RESUME ====
2024-10-03 01:53:15 (14696): Guest Log: 2024-10-03 08:52:34,802 [wrapper] pilotpid: 5975
2024-10-03 01:53:15 (14696): Guest Log: 2024-10-03 08:52:34,805 [wrapper] Pilot exit status: 0
2024-10-03 01:53:15 (14696): Guest Log: 2024-10-03 08:52:34,848 [wrapper] pandaids: 6354788542
2024-10-03 01:53:15 (14696): Guest Log: 2024-10-03 08:52:34,865 [wrapper] cleanup supervisor_pilot 24449 5976
2024-10-03 01:53:15 (14696): Guest Log: 2024-10-03 08:52:34,868 [wrapper] Test setup, not cleaning
2024-10-03 01:53:15 (14696): Guest Log: 2024-10-03 08:52:34,871 [wrapper] ==== wrapper stdout END ====
2024-10-03 01:53:15 (14696): Guest Log: 2024-10-03 08:52:34,874 [wrapper] ==== wrapper stderr END ====
2024-10-03 01:53:15 (14696): Guest Log: 2024-10-03 08:52:34,880 [wrapper] apfmon messages muted
2024-10-03 01:53:15 (14696): Guest Log:  *** Error codes and diagnostics ***
2024-10-03 01:53:15 (14696): Guest Log:     "exeErrorCode": 0,
2024-10-03 01:53:15 (14696): Guest Log:     "exeErrorDiag": "",
2024-10-03 01:53:15 (14696): Guest Log:     "pilotErrorCode": 0,
2024-10-03 01:53:15 (14696): Guest Log:     "pilotErrorDiag": "",
2024-10-03 01:53:15 (14696): Guest Log:  *** Listing of results directory ***
2024-10-03 01:53:15 (14696): Guest Log: total 255908
2024-10-03 01:53:15 (14696): Guest Log: -rw-r--r--. 1 atlas atlas    484599 Oct  3 00:20 pilot3.tar.gz
2024-10-03 01:53:15 (14696): Guest Log: -rw-r--r--. 1 atlas atlas      5653 Oct  3 00:27 queuedata.json
2024-10-03 01:53:15 (14696): Guest Log: -rwx------. 1 atlas atlas     33814 Oct  3 00:27 runpilot2-wrapper.sh
2024-10-03 01:53:15 (14696): Guest Log: -rwxr-xr-x. 1 atlas atlas      9172 Oct  3 03:00 init_data.xml
2024-10-03 01:53:15 (14696): Guest Log: -rwxr-xr-x. 1 atlas atlas    498193 Oct  3 03:00 input.tar.gz
2024-10-03 01:53:15 (14696): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 Oct  3 03:00 start_atlas.sh
2024-10-03 01:53:15 (14696): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct  3 03:00 EVNT.41491209._000020.pool.root.1 -> /data/./ATLAS.root_0
2024-10-03 01:53:15 (14696): Guest Log: -rw-r--r--. 1 atlas atlas      2628 Oct  3 03:00 pandaJob.out
2024-10-03 01:53:15 (14696): Guest Log: -rw-------. 1 atlas atlas       424 Oct  3 03:01 setup.sh.local
2024-10-03 01:53:15 (14696): Guest Log: -rw-------. 1 atlas atlas   1024603 Oct  3 03:04 agis_schedconf.cvmfs.json
2024-10-03 01:53:15 (14696): Guest Log: drwx------. 4 atlas atlas      4096 Oct  3 03:05 pilot3
2024-10-03 01:53:15 (14696): Guest Log: -rw-------. 1 atlas atlas        97 Oct  3 08:51 pilot_heartbeat.json
2024-10-03 01:53:15 (14696): Guest Log: -rw-------. 1 atlas atlas 254161803 Oct  3 08:51 HITS.41491211._000612.pool.root.1
2024-10-03 01:53:15 (14696): Guest Log: -rw-------. 1 atlas atlas      1028 Oct  3 08:52 memory_monitor_summary.json
2024-10-03 01:53:15 (14696): Guest Log: -rw-------. 1 atlas atlas   1615815 Oct  3 08:52 agis_ddmendpoints.agis.ALL.json
2024-10-03 01:53:15 (14696): Guest Log: -rw-------. 1 atlas atlas    373450 Oct  3 08:52 log.41491211._000612.job.log.tgz.1
2024-10-03 01:53:15 (14696): Guest Log: -rw-------. 1 atlas atlas      7706 Oct  3 08:52 heartbeat.json
2024-10-03 01:53:15 (14696): Guest Log: -rw-------. 1 atlas atlas      4394 Oct  3 08:52 pilotlog.txt
2024-10-03 01:53:15 (14696): Guest Log: -rw-------. 1 atlas atlas   1667152 Oct  3 08:52 log.41491211._000612.job.log.1
2024-10-03 01:53:15 (14696): Guest Log: -rw-------. 1 atlas atlas       357 Oct  3 08:52 output.list
2024-10-03 01:53:15 (14696): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct  3 08:52 runtime_log
2024-10-03 01:53:15 (14696): Guest Log: -rw-------. 1 atlas atlas   2058240 Oct  3 08:52 result.tar.gz
2024-10-03 01:53:15 (14696): Guest Log: -rw-r--r--. 1 atlas atlas     10916 Oct  3 08:52 runtime_log.err
2024-10-03 01:53:15 (14696): Guest Log: -rw-------. 1 atlas atlas       643 Oct  3 08:52 jFGNDm0rOG6n7OlckoGmwREmGgkVDo1bjSoqOlfODm1ssKDmQLeyHm.diag
2024-10-03 01:53:15 (14696): Guest Log: Looking for outputfile HITS.41491211._000612.pool.root.1
2024-10-03 01:53:15 (14696): Guest Log: HITS file was successfully produced
2024-10-03 01:53:15 (14696): Guest Log: -rw-------. 1 atlas atlas 254161803 Oct  3 08:51 /home/atlas/RunAtlas/HITS.41491211._000612.pool.root.1
2024-10-03 01:53:16 (14696): Guest Log: Successfully finished the ATLAS job!
2024-10-03 01:53:16 (14696): Guest Log: Copying the results back to the shared directory!
2024-10-03 01:53:16 (14696): Guest Log:  *** Contents of shared directory: ***
2024-10-03 01:53:16 (14696): Guest Log: total 542380
2024-10-03 01:53:16 (14696): Guest Log: -rwxrwxrwx. 1 root root 298637085 Oct  3 02:59 ATLAS.root_0
2024-10-03 01:53:16 (14696): Guest Log: -rwxrwxrwx. 1 root root 254161803 Oct  3  2024 HITS.pool.root.1
2024-10-03 01:53:16 (14696): Guest Log: -rwxrwxrwx. 1 root root      9172 Oct  3 02:59 init_data.xml
2024-10-03 01:53:16 (14696): Guest Log: -rwxrwxrwx. 1 root root    498193 Oct  3 01:20 input.tar.gz
2024-10-03 01:53:16 (14696): Guest Log: -rwxrwxrwx. 1 root root   2058240 Oct  3  2024 result.tar.gz
2024-10-03 01:53:16 (14696): Guest Log: -rwxrwxrwx. 1 root root     17537 Oct  3 01:20 start_atlas.sh
2024-10-03 01:53:16 (14696): Guest Log:  *** Success! Shutting down the machine. ***
2024-10-03 01:53:16 (14696): VM Completion File Detected.
2024-10-03 01:53:16 (14696): Powering off VM.
2024-10-03 01:53:17 (14696): Successfully stopped VM.
2024-10-03 01:53:17 (14696): Deregistering VM. (boinc_2db92df7cff9505d, slot#1)
2024-10-03 01:53:17 (14696): Removing network bandwidth throttle group from VM.
2024-10-03 01:53:17 (14696): Removing VM from VirtualBox.
01:53:23 (14696): called boinc_finish(0)

</stderr_txt>
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