Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
2024-10-02 23:31:53 (195285): Detected: vboxwrapper 26206
2024-10-02 23:31:53 (195285): Detected: BOINC client v7.16.6
2024-10-02 23:31:53 (195285): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2024-10-02 23:31:53 (195285): Successfully copied 'init_data.xml' to the shared directory.
2024-10-02 23:31:53 (195285): Create VM. (boinc_3dd6d7a8b931a0bc, slot#1)
2024-10-02 23:31:54 (195285): Setting Memory Size for VM. (4800MB)
2024-10-02 23:31:54 (195285): Setting CPU Count for VM. (8)
2024-10-02 23:31:54 (195285): Setting Chipset Options for VM.
2024-10-02 23:31:54 (195285): Setting Graphics Controller Options for VM.
2024-10-02 23:31:54 (195285): Setting Boot Options for VM.
2024-10-02 23:31:54 (195285): Setting Network Configuration for NAT.
2024-10-02 23:31:54 (195285): Enabling VM Network Access.
2024-10-02 23:31:54 (195285): Disabling USB Support for VM.
2024-10-02 23:31:55 (195285): Disabling COM Port Support for VM.
2024-10-02 23:31:55 (195285): Disabling LPT Port Support for VM.
2024-10-02 23:31:55 (195285): Disabling Audio Support for VM.
2024-10-02 23:31:55 (195285): Disabling Clipboard Support for VM.
2024-10-02 23:31:55 (195285): Disabling Drag and Drop Support for VM.
2024-10-02 23:31:55 (195285): Adding storage controller(s) to VM.
2024-10-02 23:31:55 (195285): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-10-02 23:31:56 (195285): Adding VirtualBox Guest Additions to VM.
2024-10-02 23:31:56 (195285): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-10-02 23:31:56 (195285): forwarding host port 34039 to guest port 80
2024-10-02 23:31:56 (195285): Enabling remote desktop for VM.
2024-10-02 23:31:56 (195285): Required extension pack not installed, remote desktop not enabled.
2024-10-02 23:31:56 (195285): Enabling shared directory for VM.
2024-10-02 23:31:57 (195285): Starting VM using VBoxManage interface. (boinc_3dd6d7a8b931a0bc, slot#1)
2024-10-02 23:31:58 (195285): Successfully started VM. (PID = '195857')
2024-10-02 23:31:58 (195285): Reporting VM Process ID to BOINC.
2024-10-02 23:31:58 (195285): Guest Log: BIOS: VirtualBox 6.1.50
2024-10-02 23:31:58 (195285): Guest Log: CPUID EDX: 0x178bfbff
2024-10-02 23:31:58 (195285): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-10-02 23:31:58 (195285): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-10-02 23:31:58 (195285): VM state change detected. (old = 'poweredoff', new = 'running')
2024-10-02 23:31:58 (195285): Detected: Web Application Enabled (http://localhost:34039)
2024-10-02 23:31:58 (195285): Preference change detected
2024-10-02 23:31:58 (195285): Setting CPU throttle for VM. (100%)
2024-10-02 23:31:59 (195285): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2024-10-02 23:32:00 (195285): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-10-02 23:32:00 (195285): Guest Log: BIOS: Booting from Hard Disk...
2024-10-02 23:32:27 (195285): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-10-02 23:32:27 (195285): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-10-02 23:32:27 (195285): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-10-02 23:32:27 (195285): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-10-02 23:32:27 (195285): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-10-02 23:32:27 (195285): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-10-02 23:32:27 (195285): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-10-02 23:32:27 (195285): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-10-02 23:32:27 (195285): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-10-02 23:32:27 (195285): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-10-02 23:32:27 (195285): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-10-02 23:32:27 (195285): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-10-02 23:32:27 (195285): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-10-02 23:32:27 (195285): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-10-02 23:32:27 (195285): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-10-02 23:32:27 (195285): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-10-02 23:32:27 (195285): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-10-02 23:32:27 (195285): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-10-02 23:32:27 (195285): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-10-02 23:32:27 (195285): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-10-02 23:32:27 (195285): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-10-02 23:32:27 (195285): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-10-02 23:32:27 (195285): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-10-02 23:32:27 (195285): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-10-02 23:32:27 (195285): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-10-02 23:32:27 (195285): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-10-02 23:32:27 (195285): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-10-02 23:32:27 (195285): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-10-02 23:32:27 (195285): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-10-02 23:32:27 (195285): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-10-02 23:32:27 (195285): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-10-02 23:32:27 (195285): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-10-02 23:32:40 (195285): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-10-02 23:32:40 (195285): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-10-02 23:32:55 (195285): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-10-02 23:32:55 (195285): Guest Log: 00:00:00.000382 main     Log opened 2024-10-03T03:32:53.816309000Z
2024-10-02 23:32:55 (195285): Guest Log: 00:00:00.000611 main     OS Product: Linux
2024-10-02 23:32:55 (195285): Guest Log: 00:00:00.000803 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-10-02 23:32:55 (195285): Guest Log: 00:00:00.000876 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-10-02 23:32:55 (195285): Guest Log: 00:00:00.000943 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-10-02 23:32:55 (195285): Guest Log: 00:00:00.000945 main     Process ID: 1332
2024-10-02 23:32:55 (195285): Guest Log: 00:00:00.000946 main     Package type: LINUX_64BITS_GENERIC
2024-10-02 23:32:55 (195285): Guest Log: 00:00:00.005028 main     5.2.32 r132073 started. Verbose level = 0
2024-10-02 23:32:56 (195285): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-10-02 23:32:56 (195285): Guest Log: [INFO] Mounting shared directory
2024-10-02 23:32:56 (195285): Guest Log: [INFO] Checking for init_data.xml
2024-10-02 23:33:01 (195285): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-10-02 23:33:01 (195285): Guest Log: [INFO] Detected branch: prod
2024-10-02 23:33:02 (195285): Guest Log: This is the prod version of the ATLAS job wrapper
2024-10-02 23:33:02 (195285): Guest Log: Copying input files
2024-10-02 23:33:19 (195285): Guest Log: Copied input files into RunAtlas.
2024-10-02 23:33:19 (195285): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-10-02 23:33:19 (195285): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-10-02 23:33:19 (195285): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-10-02 23:33:19 (195285): Guest Log: Further information can be found at the LHC@home message board.
2024-10-02 23:33:36 (195285): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-10-02 23:33:37 (195285): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-10-02 23:33:37 (195285): Guest Log: 2.6.3.0 1611 0 32196 137915 3 1 3117398 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-10-02 23:33:39 (195285): Guest Log: copied the webapp to /var/www
2024-10-02 23:33:39 (195285): Guest Log: ATHENA_PROC_NUMBER=8
2024-10-02 23:33:39 (195285): Guest Log: ATHENA_CORE_NUMBER=8
2024-10-02 23:33:40 (195285): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-10-02 23:33:40 (195285): Guest Log:  *** Starting ATLAS job. (PandaID=6354653332 taskID=41481181) ***
2024-10-03 00:41:37 (195285): Preference change detected
2024-10-03 00:41:37 (195285): Setting CPU throttle for VM. (100%)
2024-10-03 00:41:37 (195285): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2024-10-03 01:10:59 (195285): Status Report: Elapsed Time: '6000.282219'
2024-10-03 01:10:59 (195285): Status Report: CPU Time: '34754.370000'
2024-10-03 02:50:00 (195285): Status Report: Elapsed Time: '12000.282219'
2024-10-03 02:50:00 (195285): Status Report: CPU Time: '80106.570000'
2024-10-03 04:29:01 (195285): Status Report: Elapsed Time: '18000.282219'
2024-10-03 04:29:01 (195285): Status Report: CPU Time: '125435.860000'
2024-10-03 05:22:38 (195285): Guest Log:  *** Job finished ***
2024-10-03 05:22:38 (195285): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-10-03 05:22:38 (195285): Guest Log: 2024-10-03 09:22:27,890 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2024-10-03 05:22:38 (195285): Guest Log: 2024-10-03 09:22:28,892 | INFO     | [job] queue monitor thread has finished
2024-10-03 05:22:38 (195285): Guest Log: 2024-10-03 09:22:31,378 | INFO     | [data] queue_monitor thread has finished
2024-10-03 05:22:38 (195285): Guest Log: 2024-10-03 09:22:31,393 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139668073809728)>', '<ExcThread(monitor, started 139666766427904)>']
2024-10-03 05:22:38 (195285): Guest Log: 2024-10-03 09:22:32,041 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-10-03 05:22:38 (195285): Guest Log: 2024-10-03 09:22:32,041 | INFO     | [monitor] control thread has ended
2024-10-03 05:22:38 (195285): Guest Log: 2024-10-03 09:22:36,442 | INFO     | all workflow threads have been joined
2024-10-03 05:22:38 (195285): Guest Log: 2024-10-03 09:22:36,442 | INFO     | end of generic workflow (traces error code: 0)
2024-10-03 05:22:38 (195285): Guest Log: 2024-10-03 09:22:36,443 | INFO     | traces error code: 0
2024-10-03 05:22:38 (195285): Guest Log: 2024-10-03 09:22:36,444 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-10-03 05:22:38 (195285): Guest Log: 2024-10-03 09:22:36,658 [wrapper] ==== pilot stdout END ====
2024-10-03 05:22:38 (195285): Guest Log: 2024-10-03 09:22:36,677 [wrapper] ==== wrapper stdout RESUME ====
2024-10-03 05:22:38 (195285): Guest Log: 2024-10-03 09:22:36,693 [wrapper] pilotpid: 6009
2024-10-03 05:22:38 (195285): Guest Log: 2024-10-03 09:22:36,710 [wrapper] Pilot exit status: 0
2024-10-03 05:22:38 (195285): Guest Log: 2024-10-03 09:22:36,809 [wrapper] pandaids: 6354653332
2024-10-03 05:22:38 (195285): Guest Log: 2024-10-03 09:22:36,923 [wrapper] cleanup supervisor_pilot 25846 6010
2024-10-03 05:22:38 (195285): Guest Log: 2024-10-03 09:22:36,940 [wrapper] Test setup, not cleaning
2024-10-03 05:22:38 (195285): Guest Log: 2024-10-03 09:22:36,958 [wrapper] ==== wrapper stdout END ====
2024-10-03 05:22:38 (195285): Guest Log: 2024-10-03 09:22:36,975 [wrapper] ==== wrapper stderr END ====
2024-10-03 05:22:38 (195285): Guest Log: 2024-10-03 09:22:37,011 [wrapper] apfmon messages muted
2024-10-03 05:22:38 (195285): Guest Log:  *** Error codes and diagnostics ***
2024-10-03 05:22:39 (195285): Guest Log:     "exeErrorCode": 0,
2024-10-03 05:22:39 (195285): Guest Log:     "exeErrorDiag": "",
2024-10-03 05:22:39 (195285): Guest Log:     "pilotErrorCode": 0,
2024-10-03 05:22:39 (195285): Guest Log:     "pilotErrorDiag": "",
2024-10-03 05:22:39 (195285): Guest Log:  *** Listing of results directory ***
2024-10-03 05:22:39 (195285): Guest Log: total 265308
2024-10-03 05:22:39 (195285): Guest Log: -rw-r--r--. 1 atlas atlas    484599 Oct  2 22:21 pilot3.tar.gz
2024-10-03 05:22:39 (195285): Guest Log: -rw-r--r--. 1 atlas atlas      5653 Oct  2 22:26 queuedata.json
2024-10-03 05:22:39 (195285): Guest Log: -rwx------. 1 atlas atlas     33814 Oct  2 22:27 runpilot2-wrapper.sh
2024-10-03 05:22:39 (195285): Guest Log: -rw-r--r--. 1 atlas atlas     17537 Oct  3 03:33 start_atlas.sh
2024-10-03 05:22:39 (195285): Guest Log: -rw-r--r--. 1 atlas atlas      5901 Oct  3 03:33 init_data.xml
2024-10-03 05:22:39 (195285): Guest Log: -rw-r--r--. 1 atlas atlas    498179 Oct  3 03:33 input.tar.gz
2024-10-03 05:22:39 (195285): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct  3 03:33 EVNT.41466530._000061.pool.root.1 -> /data/./ATLAS.root_0
2024-10-03 05:22:39 (195285): Guest Log: -rw-r--r--. 1 atlas atlas      2535 Oct  3 03:33 pandaJob.out
2024-10-03 05:22:39 (195285): Guest Log: -rw-------. 1 atlas atlas       424 Oct  3 03:33 setup.sh.local
2024-10-03 05:22:39 (195285): Guest Log: -rw-------. 1 atlas atlas   1024603 Oct  3 03:34 agis_schedconf.cvmfs.json
2024-10-03 05:22:39 (195285): Guest Log: drwx------. 4 atlas atlas      4096 Oct  3 03:34 pilot3
2024-10-03 05:22:39 (195285): Guest Log: -rw-------. 1 atlas atlas 263448673 Oct  3 09:21 HITS.41481181._004221.pool.root.1
2024-10-03 05:22:39 (195285): Guest Log: -rw-------. 1 atlas atlas      1041 Oct  3 09:21 memory_monitor_summary.json
2024-10-03 05:22:39 (195285): Guest Log: -rw-------. 1 atlas atlas   1615815 Oct  3 09:22 agis_ddmendpoints.agis.ALL.json
2024-10-03 05:22:39 (195285): Guest Log: -rw-------. 1 atlas atlas    469016 Oct  3 09:22 log.41481181._004221.job.log.tgz.1
2024-10-03 05:22:39 (195285): Guest Log: -rw-------. 1 atlas atlas        95 Oct  3 09:22 pilot_heartbeat.json
2024-10-03 05:22:39 (195285): Guest Log: -rw-------. 1 atlas atlas      7767 Oct  3 09:22 heartbeat.json
2024-10-03 05:22:39 (195285): Guest Log: -rw-------. 1 atlas atlas      4394 Oct  3 09:22 pilotlog.txt
2024-10-03 05:22:39 (195285): Guest Log: -rw-------. 1 atlas atlas   1748727 Oct  3 09:22 log.41481181._004221.job.log.1
2024-10-03 05:22:39 (195285): Guest Log: -rw-------. 1 atlas atlas       357 Oct  3 09:22 output.list
2024-10-03 05:22:39 (195285): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct  3 09:22 runtime_log
2024-10-03 05:22:39 (195285): Guest Log: -rw-------. 1 atlas atlas   2232320 Oct  3 09:22 result.tar.gz
2024-10-03 05:22:39 (195285): Guest Log: -rw-r--r--. 1 atlas atlas     10937 Oct  3 09:22 runtime_log.err
2024-10-03 05:22:39 (195285): Guest Log: -rw-------. 1 atlas atlas       653 Oct  3 09:22 CCmNDmazMG6n9Rq4apOajLDm4fhM0noT9bVorHsSDmyTbKDmZgOKfn.diag
2024-10-03 05:22:39 (195285): Guest Log: Looking for outputfile HITS.41481181._004221.pool.root.1
2024-10-03 05:22:39 (195285): Guest Log: HITS file was successfully produced
2024-10-03 05:22:39 (195285): Guest Log: -rw-------. 1 atlas atlas 263448673 Oct  3 09:21 /home/atlas/RunAtlas/HITS.41481181._004221.pool.root.1
2024-10-03 05:22:39 (195285): Guest Log: Successfully finished the ATLAS job!
2024-10-03 05:22:39 (195285): Guest Log: Copying the results back to the shared directory!
2024-10-03 05:22:39 (195285): Guest Log:  *** Contents of shared directory: ***
2024-10-03 05:22:39 (195285): Guest Log: total 622376
2024-10-03 05:22:39 (195285): Guest Log: -rw-r--r--. 1 root root 634545352 Oct  3 03:31 ATLAS.root_0
2024-10-03 05:22:39 (195285): Guest Log: -rw-r--r--. 1 root root      5901 Oct  3 03:31 init_data.xml
2024-10-03 05:22:39 (195285): Guest Log: -rw-r--r--. 1 root root    498179 Oct  3 03:31 input.tar.gz
2024-10-03 05:22:39 (195285): Guest Log: -rw-r--r--. 1 root root   2232320 Oct  3 09:22 result.tar.gz
2024-10-03 05:22:39 (195285): Guest Log: -rw-r--r--. 1 root root     17537 Oct  3 03:31 start_atlas.sh
2024-10-03 05:22:39 (195285): Guest Log:  *** Success! Shutting down the machine. ***
2024-10-03 05:22:39 (195285): VM Completion File Detected.
2024-10-03 05:22:39 (195285): Powering off VM.
2024-10-03 05:22:40 (195285): Successfully stopped VM.
2024-10-03 05:22:40 (195285): Deregistering VM. (boinc_3dd6d7a8b931a0bc, slot#1)
2024-10-03 05:22:40 (195285): Removing network bandwidth throttle group from VM.
2024-10-03 05:22:40 (195285): Removing VM from VirtualBox.
05:22:45 (195285): called boinc_finish(0)

</stderr_txt>
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