Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
2024-10-06 10:17:06 (4848): Detected: vboxwrapper 26206
2024-10-06 10:17:06 (4848): Detected: BOINC client v7.20.2
2024-10-06 10:17:06 (4848): Detected: VirtualBox VboxManage Interface (Version: 7.0.20)
2024-10-06 10:17:06 (4848): Successfully copied 'init_data.xml' to the shared directory.
2024-10-06 10:17:06 (4848): Create VM. (boinc_7f336d7923b50a99, slot#4)
2024-10-06 10:17:07 (4848): Setting Memory Size for VM. (4200MB)
2024-10-06 10:17:08 (4848): Setting CPU Count for VM. (2)
2024-10-06 10:17:08 (4848): Setting Chipset Options for VM.
2024-10-06 10:17:08 (4848): Setting Graphics Controller Options for VM.
2024-10-06 10:17:09 (4848): Setting Boot Options for VM.
2024-10-06 10:17:09 (4848): Setting Network Configuration for NAT.
2024-10-06 10:17:10 (4848): Enabling VM Network Access.
2024-10-06 10:17:11 (4848): Disabling USB Support for VM.
2024-10-06 10:17:11 (4848): Disabling COM Port Support for VM.
2024-10-06 10:17:12 (4848): Disabling LPT Port Support for VM.
2024-10-06 10:17:12 (4848): Disabling Audio Support for VM.
2024-10-06 10:17:12 (4848): Disabling Clipboard Support for VM.
2024-10-06 10:17:12 (4848): Disabling Drag and Drop Support for VM.
2024-10-06 10:17:13 (4848): Adding storage controller(s) to VM.
2024-10-06 10:17:14 (4848): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-10-06 10:17:15 (4848): Adding VirtualBox Guest Additions to VM.
2024-10-06 10:17:15 (4848): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-10-06 10:17:15 (4848): forwarding host port 39414 to guest port 80
2024-10-06 10:17:15 (4848): Enabling remote desktop for VM.
2024-10-06 10:17:15 (4848): Required extension pack not installed, remote desktop not enabled.
2024-10-06 10:17:15 (4848): Enabling shared directory for VM.
2024-10-06 10:17:16 (4848): Starting VM using VBoxManage interface. (boinc_7f336d7923b50a99, slot#4)
2024-10-06 10:17:17 (4848): Successfully started VM. (PID = '5333')
2024-10-06 10:17:17 (4848): Reporting VM Process ID to BOINC.
2024-10-06 10:17:17 (4848): Guest Log: BIOS: VirtualBox 7.0.20
2024-10-06 10:17:17 (4848): Guest Log: CPUID EDX: 0x178bfbff
2024-10-06 10:17:17 (4848): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-10-06 10:17:17 (4848): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-10-06 10:17:17 (4848): VM state change detected. (old = 'poweredoff', new = 'running')
2024-10-06 10:17:17 (4848): Detected: Web Application Enabled (http://localhost:39414)
2024-10-06 10:17:17 (4848): Preference change detected
2024-10-06 10:17:17 (4848): Setting CPU throttle for VM. (100%)
2024-10-06 10:17:18 (4848): Setting network throttle for VM. (1024KB)
2024-10-06 10:17:18 (4848): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-10-06 10:17:19 (4848): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-10-06 10:17:19 (4848): Guest Log: BIOS: Booting from Hard Disk...
2024-10-06 10:17:28 (4848): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-10-06 10:17:28 (4848): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-10-06 10:17:29 (4848): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-10-06 10:17:29 (4848): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-10-06 10:17:29 (4848): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-10-06 10:17:29 (4848): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-10-06 10:17:29 (4848): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-10-06 10:17:29 (4848): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-10-06 10:17:29 (4848): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-10-06 10:17:29 (4848): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-10-06 10:17:29 (4848): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-10-06 10:17:29 (4848): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-10-06 10:17:29 (4848): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-10-06 10:17:29 (4848): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-10-06 10:17:29 (4848): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-10-06 10:17:29 (4848): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-10-06 10:17:29 (4848): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-10-06 10:17:29 (4848): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-10-06 10:17:29 (4848): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-10-06 10:17:29 (4848): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-10-06 10:17:29 (4848): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-10-06 10:17:29 (4848): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-10-06 10:17:29 (4848): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-10-06 10:17:29 (4848): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-10-06 10:17:29 (4848): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-10-06 10:17:29 (4848): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-10-06 10:17:29 (4848): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-10-06 10:17:29 (4848): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-10-06 10:17:29 (4848): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-10-06 10:17:29 (4848): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-10-06 10:17:29 (4848): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-10-06 10:17:29 (4848): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-10-06 10:18:15 (4848): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-10-06 10:18:15 (4848): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-10-06 10:21:43 (4848): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-10-06 10:21:43 (4848): Guest Log: 00:00:00.000249 main     Log opened 2024-10-06T07:21:40.572040000Z
2024-10-06 10:21:43 (4848): Guest Log: 00:00:00.000409 main     OS Product: Linux
2024-10-06 10:21:43 (4848): Guest Log: 00:00:00.000474 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-10-06 10:21:43 (4848): Guest Log: 00:00:00.000520 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-10-06 10:21:43 (4848): Guest Log: 00:00:00.000567 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-10-06 10:21:43 (4848): Guest Log: 00:00:00.000568 main     Process ID: 1320
2024-10-06 10:21:43 (4848): Guest Log: 00:00:00.000569 main     Package type: LINUX_64BITS_GENERIC
2024-10-06 10:21:43 (4848): Guest Log: 00:00:00.014549 main     5.2.32 r132073 started. Verbose level = 0
2024-10-06 10:21:44 (4848): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-10-06 10:21:44 (4848): Guest Log: [INFO] Mounting shared directory
2024-10-06 10:21:44 (4848): Guest Log: [INFO] Checking for init_data.xml
2024-10-06 10:21:54 (4848): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-10-06 10:21:54 (4848): Guest Log: [INFO] Detected branch: prod
2024-10-06 10:21:54 (4848): Guest Log: This is the prod version of the ATLAS job wrapper
2024-10-06 10:21:54 (4848): Guest Log: Copying input files
2024-10-06 10:21:58 (4848): Guest Log: Copied input files into RunAtlas.
2024-10-06 10:21:58 (4848): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-10-06 10:21:58 (4848): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-10-06 10:21:58 (4848): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-10-06 10:21:58 (4848): Guest Log: Further information can be found at the LHC@home message board.
2024-10-06 10:22:12 (4848): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-10-06 10:22:15 (4848): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-10-06 10:22:15 (4848): Guest Log: 2.6.3.0 1595 0 32116 138031 3 1 3117399 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-10-06 10:22:30 (4848): Guest Log: copied the webapp to /var/www
2024-10-06 10:22:30 (4848): Guest Log: ATHENA_PROC_NUMBER=2
2024-10-06 10:22:30 (4848): Guest Log: ATHENA_CORE_NUMBER=2
2024-10-06 10:22:31 (4848): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-10-06 10:22:31 (4848): Guest Log:  *** Starting ATLAS job. (PandaID=6354376780 taskID=41491228) ***
2024-10-06 11:56:20 (4848): Status Report: Elapsed Time: '6000.000000'
2024-10-06 11:56:20 (4848): Status Report: CPU Time: '8625.890000'
2024-10-06 13:35:22 (4848): Status Report: Elapsed Time: '12000.000000'
2024-10-06 13:35:22 (4848): Status Report: CPU Time: '20476.630000'
2024-10-06 15:14:26 (4848): Status Report: Elapsed Time: '18000.000000'
2024-10-06 15:14:26 (4848): Status Report: CPU Time: '32299.930000'
2024-10-06 16:53:28 (4848): Status Report: Elapsed Time: '24000.000000'
2024-10-06 16:53:28 (4848): Status Report: CPU Time: '44144.240000'
2024-10-06 18:32:30 (4848): Status Report: Elapsed Time: '30000.000000'
2024-10-06 18:32:30 (4848): Status Report: CPU Time: '56007.260000'
2024-10-06 18:36:40 (4848): Preference change detected
2024-10-06 18:36:40 (4848): Setting CPU throttle for VM. (100%)
2024-10-06 18:36:42 (4848): Setting network throttle for VM. (1024KB)
2024-10-06 18:36:42 (4848): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-10-06 20:11:32 (4848): Status Report: Elapsed Time: '36000.567928'
2024-10-06 20:11:32 (4848): Status Report: CPU Time: '67858.020000'
2024-10-06 21:50:33 (4848): Status Report: Elapsed Time: '42000.567928'
2024-10-06 21:50:33 (4848): Status Report: CPU Time: '79724.430000'
2024-10-06 23:29:37 (4848): Status Report: Elapsed Time: '48000.567928'
2024-10-06 23:29:37 (4848): Status Report: CPU Time: '91564.470000'
2024-10-07 01:08:38 (4848): Status Report: Elapsed Time: '54000.567928'
2024-10-07 01:08:38 (4848): Status Report: CPU Time: '103430.490000'
2024-10-07 01:49:00 (4848): Guest Log:  *** Job finished ***
2024-10-07 01:49:00 (4848): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-10-07 01:49:00 (4848): Guest Log: 2024-10-06 22:48:51,550 | INFO     | [payload] control thread has finished
2024-10-07 01:49:00 (4848): Guest Log: 2024-10-06 22:48:51,646 | INFO     | [payload] run_realtimelog thread has finished
2024-10-07 01:49:00 (4848): Guest Log: 2024-10-06 22:48:53,230 | INFO     | [data] queue_monitor thread has finished
2024-10-07 01:49:00 (4848): Guest Log: 2024-10-06 22:48:53,580 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140104769120064)>', '<ExcThread(monitor, started 140103938713344)>']
2024-10-07 01:49:00 (4848): Guest Log: 2024-10-06 22:48:54,233 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-10-07 01:49:00 (4848): Guest Log: 2024-10-06 22:48:54,233 | INFO     | [monitor] control thread has ended
2024-10-07 01:49:00 (4848): Guest Log: 2024-10-06 22:48:58,586 | INFO     | all workflow threads have been joined
2024-10-07 01:49:00 (4848): Guest Log: 2024-10-06 22:48:58,587 | INFO     | end of generic workflow (traces error code: 0)
2024-10-07 01:49:00 (4848): Guest Log: 2024-10-06 22:48:58,587 | INFO     | traces error code: 0
2024-10-07 01:49:00 (4848): Guest Log: 2024-10-06 22:48:58,587 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-10-07 01:49:00 (4848): Guest Log: 2024-10-06 22:48:58,722 [wrapper] ==== pilot stdout END ====
2024-10-07 01:49:00 (4848): Guest Log: 2024-10-06 22:48:58,727 [wrapper] ==== wrapper stdout RESUME ====
2024-10-07 01:49:00 (4848): Guest Log: 2024-10-06 22:48:58,733 [wrapper] pilotpid: 5935
2024-10-07 01:49:00 (4848): Guest Log: 2024-10-06 22:48:58,738 [wrapper] Pilot exit status: 0
2024-10-07 01:49:00 (4848): Guest Log: 2024-10-06 22:48:58,936 [wrapper] pandaids: 6354376780
2024-10-07 01:49:00 (4848): Guest Log: 2024-10-06 22:48:58,962 [wrapper] cleanup supervisor_pilot 17755 5936
2024-10-07 01:49:00 (4848): Guest Log: 2024-10-06 22:48:58,966 [wrapper] Test setup, not cleaning
2024-10-07 01:49:00 (4848): Guest Log: 2024-10-06 22:48:58,971 [wrapper] ==== wrapper stdout END ====
2024-10-07 01:49:00 (4848): Guest Log: 2024-10-06 22:48:58,975 [wrapper] ==== wrapper stderr END ====
2024-10-07 01:49:00 (4848): Guest Log: 2024-10-06 22:48:58,984 [wrapper] apfmon messages muted
2024-10-07 01:49:00 (4848): Guest Log:  *** Error codes and diagnostics ***
2024-10-07 01:49:00 (4848): Guest Log:     "exeErrorCode": 0,
2024-10-07 01:49:00 (4848): Guest Log:     "exeErrorDiag": "",
2024-10-07 01:49:00 (4848): Guest Log:     "pilotErrorCode": 0,
2024-10-07 01:49:00 (4848): Guest Log:     "pilotErrorDiag": "",
2024-10-07 01:49:00 (4848): Guest Log:  *** Listing of results directory ***
2024-10-07 01:49:00 (4848): Guest Log: total 287052
2024-10-07 01:49:00 (4848): Guest Log: -rw-r--r--. 1 atlas atlas    484599 Oct  2 15:04 pilot3.tar.gz
2024-10-07 01:49:00 (4848): Guest Log: -rw-r--r--. 1 atlas atlas      5653 Oct  2 15:27 queuedata.json
2024-10-07 01:49:00 (4848): Guest Log: -rwx------. 1 atlas atlas     33814 Oct  2 15:29 runpilot2-wrapper.sh
2024-10-07 01:49:00 (4848): Guest Log: -rw-r--r--. 1 atlas atlas    498198 Oct  6 07:21 input.tar.gz
2024-10-07 01:49:00 (4848): Guest Log: -rw-r--r--. 1 atlas atlas     17537 Oct  6 07:21 start_atlas.sh
2024-10-07 01:49:00 (4848): Guest Log: -rw-r--r--. 1 atlas atlas      9264 Oct  6 07:21 init_data.xml
2024-10-07 01:49:00 (4848): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct  6 07:21 EVNT.41491226._000008.pool.root.1 -> /data/./ATLAS.root_0
2024-10-07 01:49:00 (4848): Guest Log: -rw-r--r--. 1 atlas atlas      2675 Oct  6 07:22 pandaJob.out
2024-10-07 01:49:00 (4848): Guest Log: -rw-------. 1 atlas atlas       424 Oct  6 07:22 setup.sh.local
2024-10-07 01:49:00 (4848): Guest Log: -rw-------. 1 atlas atlas   1024749 Oct  6 07:24 agis_schedconf.cvmfs.json
2024-10-07 01:49:00 (4848): Guest Log: drwx------. 4 atlas atlas      4096 Oct  6 07:24 pilot3
2024-10-07 01:49:00 (4848): Guest Log: -rw-------. 1 atlas atlas 275778119 Oct  6 22:47 HITS.41491228._000192.pool.root.1
2024-10-07 01:49:00 (4848): Guest Log: -rw-------. 1 atlas atlas      1044 Oct  6 22:48 memory_monitor_summary.json
2024-10-07 01:49:00 (4848): Guest Log: -rw-------. 1 atlas atlas   1615815 Oct  6 22:48 agis_ddmendpoints.agis.ALL.json
2024-10-07 01:49:00 (4848): Guest Log: -rw-------. 1 atlas atlas    723250 Oct  6 22:48 log.41491228._000192.job.log.tgz.1
2024-10-07 01:49:00 (4848): Guest Log: -rw-------. 1 atlas atlas        95 Oct  6 22:48 pilot_heartbeat.json
2024-10-07 01:49:00 (4848): Guest Log: -rw-------. 1 atlas atlas      7736 Oct  6 22:48 heartbeat.json
2024-10-07 01:49:00 (4848): Guest Log: -rw-------. 1 atlas atlas      4394 Oct  6 22:48 pilotlog.txt
2024-10-07 01:49:00 (4848): Guest Log: -rw-------. 1 atlas atlas   6457857 Oct  6 22:48 log.41491228._000192.job.log.1
2024-10-07 01:49:00 (4848): Guest Log: -rw-------. 1 atlas atlas       357 Oct  6 22:48 output.list
2024-10-07 01:49:00 (4848): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct  6 22:48 runtime_log
2024-10-07 01:49:00 (4848): Guest Log: -rw-------. 1 atlas atlas   7198720 Oct  6 22:48 result.tar.gz
2024-10-07 01:49:00 (4848): Guest Log: -rw-------. 1 atlas atlas       655 Oct  6 22:48 xBXNDmLTGG6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmK9nKDmDlfNpn.diag
2024-10-07 01:49:00 (4848): Guest Log: -rw-r--r--. 1 atlas atlas     10943 Oct  6 22:48 runtime_log.err
2024-10-07 01:49:00 (4848): Guest Log: Looking for outputfile HITS.41491228._000192.pool.root.1
2024-10-07 01:49:00 (4848): Guest Log: HITS file was successfully produced
2024-10-07 01:49:00 (4848): Guest Log: -rw-------. 1 atlas atlas 275778119 Oct  6 22:47 /home/atlas/RunAtlas/HITS.41491228._000192.pool.root.1
2024-10-07 01:49:00 (4848): Guest Log: Successfully finished the ATLAS job!
2024-10-07 01:49:00 (4848): Guest Log: Copying the results back to the shared directory!
2024-10-07 01:49:00 (4848): Guest Log:  *** Contents of shared directory: ***
2024-10-07 01:49:00 (4848): Guest Log: total 317844
2024-10-07 01:49:00 (4848): Guest Log: -rw-r--r--. 1 root root 317737187 Oct  6 07:17 ATLAS.root_0
2024-10-07 01:49:00 (4848): Guest Log: -rw-r--r--. 1 root root      9264 Oct  6 07:17 init_data.xml
2024-10-07 01:49:00 (4848): Guest Log: -rw-r--r--. 1 root root    498198 Oct  6 07:17 input.tar.gz
2024-10-07 01:49:00 (4848): Guest Log: -rw-r--r--. 1 root root   7198720 Oct  6 22:48 result.tar.gz
2024-10-07 01:49:00 (4848): Guest Log: -rw-r--r--. 1 root root     17537 Oct  6 07:17 start_atlas.sh
2024-10-07 01:49:00 (4848): Guest Log:  *** Success! Shutting down the machine. ***
2024-10-07 01:49:00 (4848): VM Completion File Detected.
2024-10-07 01:49:00 (4848): Powering off VM.
2024-10-07 01:49:00 (4848): Successfully stopped VM.
2024-10-07 01:49:00 (4848): Deregistering VM. (boinc_7f336d7923b50a99, slot#4)
2024-10-07 01:49:00 (4848): Removing network bandwidth throttle group from VM.
2024-10-07 01:49:00 (4848): Removing VM from VirtualBox.
01:49:06 (4848): called boinc_finish(0)

</stderr_txt>
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