Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
2024-10-08 22:44:27 (7642): Detected: vboxwrapper 26206
2024-10-08 22:44:27 (7642): Detected: BOINC client v7.20.2
2024-10-08 22:44:27 (7642): Detected: VirtualBox VboxManage Interface (Version: 7.0.20)
2024-10-08 22:44:27 (7642): Successfully copied 'init_data.xml' to the shared directory.
2024-10-08 22:44:27 (7642): Create VM. (boinc_eac60a858a9a1ee8, slot#6)
2024-10-08 22:44:29 (7642): Setting Memory Size for VM. (4200MB)
2024-10-08 22:44:29 (7642): Setting CPU Count for VM. (2)
2024-10-08 22:44:29 (7642): Setting Chipset Options for VM.
2024-10-08 22:44:30 (7642): Setting Graphics Controller Options for VM.
2024-10-08 22:44:30 (7642): Setting Boot Options for VM.
2024-10-08 22:44:31 (7642): Setting Network Configuration for NAT.
2024-10-08 22:44:31 (7642): Enabling VM Network Access.
2024-10-08 22:44:32 (7642): Disabling USB Support for VM.
2024-10-08 22:44:32 (7642): Disabling COM Port Support for VM.
2024-10-08 22:44:32 (7642): Disabling LPT Port Support for VM.
2024-10-08 22:44:33 (7642): Disabling Audio Support for VM.
2024-10-08 22:44:33 (7642): Disabling Clipboard Support for VM.
2024-10-08 22:44:33 (7642): Disabling Drag and Drop Support for VM.
2024-10-08 22:44:34 (7642): Adding storage controller(s) to VM.
2024-10-08 22:44:35 (7642): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-10-08 22:44:39 (7642): Adding VirtualBox Guest Additions to VM.
2024-10-08 22:44:40 (7642): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-10-08 22:44:41 (7642): forwarding host port 51822 to guest port 80
2024-10-08 22:44:41 (7642): Enabling remote desktop for VM.
2024-10-08 22:44:41 (7642): Required extension pack not installed, remote desktop not enabled.
2024-10-08 22:44:41 (7642): Enabling shared directory for VM.
2024-10-08 22:44:42 (7642): Starting VM using VBoxManage interface. (boinc_eac60a858a9a1ee8, slot#6)
2024-10-08 22:44:43 (7642): Successfully started VM. (PID = '8227')
2024-10-08 22:44:43 (7642): Reporting VM Process ID to BOINC.
2024-10-08 22:44:43 (7642): Guest Log: BIOS: VirtualBox 7.0.20
2024-10-08 22:44:43 (7642): Guest Log: CPUID EDX: 0x178bfbff
2024-10-08 22:44:43 (7642): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-10-08 22:44:43 (7642): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-10-08 22:44:43 (7642): VM state change detected. (old = 'poweredoff', new = 'running')
2024-10-08 22:44:43 (7642): Detected: Web Application Enabled (http://localhost:51822)
2024-10-08 22:44:43 (7642): Preference change detected
2024-10-08 22:44:43 (7642): Setting CPU throttle for VM. (100%)
2024-10-08 22:44:44 (7642): Setting network throttle for VM. (1024KB)
2024-10-08 22:44:44 (7642): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-10-08 22:44:45 (7642): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-10-08 22:44:45 (7642): Guest Log: BIOS: Booting from Hard Disk...
2024-10-08 22:44:55 (7642): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-10-08 22:44:55 (7642): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-10-08 22:44:55 (7642): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-10-08 22:44:55 (7642): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-10-08 22:44:55 (7642): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-10-08 22:44:55 (7642): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-10-08 22:44:55 (7642): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-10-08 22:44:55 (7642): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-10-08 22:44:55 (7642): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-10-08 22:44:55 (7642): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-10-08 22:44:55 (7642): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-10-08 22:44:55 (7642): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-10-08 22:44:55 (7642): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-10-08 22:44:55 (7642): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-10-08 22:44:55 (7642): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-10-08 22:44:55 (7642): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-10-08 22:44:55 (7642): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-10-08 22:44:55 (7642): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-10-08 22:44:55 (7642): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-10-08 22:44:55 (7642): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-10-08 22:44:55 (7642): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-10-08 22:44:55 (7642): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-10-08 22:44:55 (7642): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-10-08 22:44:55 (7642): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-10-08 22:44:55 (7642): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-10-08 22:44:55 (7642): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-10-08 22:44:55 (7642): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-10-08 22:44:55 (7642): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-10-08 22:44:55 (7642): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-10-08 22:44:55 (7642): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-10-08 22:44:55 (7642): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-10-08 22:44:55 (7642): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-10-08 22:45:39 (7642): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-10-08 22:45:39 (7642): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-10-08 22:47:39 (7642): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-10-08 22:47:39 (7642): Guest Log: 00:00:00.000181 main     Log opened 2024-10-08T19:47:36.979749000Z
2024-10-08 22:47:39 (7642): Guest Log: 00:00:00.000298 main     OS Product: Linux
2024-10-08 22:47:39 (7642): Guest Log: 00:00:00.000335 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-10-08 22:47:39 (7642): Guest Log: 00:00:00.000362 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-10-08 22:47:39 (7642): Guest Log: 00:00:00.000387 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-10-08 22:47:39 (7642): Guest Log: 00:00:00.000388 main     Process ID: 1314
2024-10-08 22:47:39 (7642): Guest Log: 00:00:00.000389 main     Package type: LINUX_64BITS_GENERIC
2024-10-08 22:47:39 (7642): Guest Log: 00:00:00.001699 main     5.2.32 r132073 started. Verbose level = 0
2024-10-08 22:47:40 (7642): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-10-08 22:47:40 (7642): Guest Log: [INFO] Mounting shared directory
2024-10-08 22:47:41 (7642): Guest Log: [INFO] Checking for init_data.xml
2024-10-08 22:47:48 (7642): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-10-08 22:47:48 (7642): Guest Log: [INFO] Detected branch: prod
2024-10-08 22:47:49 (7642): Guest Log: This is the prod version of the ATLAS job wrapper
2024-10-08 22:47:49 (7642): Guest Log: Copying input files
2024-10-08 22:47:51 (7642): Guest Log: Copied input files into RunAtlas.
2024-10-08 22:47:51 (7642): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-10-08 22:47:51 (7642): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-10-08 22:47:51 (7642): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-10-08 22:47:51 (7642): Guest Log: Further information can be found at the LHC@home message board.
2024-10-08 22:48:04 (7642): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-10-08 22:48:06 (7642): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-10-08 22:48:06 (7642): Guest Log: 2.6.3.0 1591 0 30160 138117 3 1 3117399 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-10-08 22:48:14 (7642): Guest Log: copied the webapp to /var/www
2024-10-08 22:48:14 (7642): Guest Log: ATHENA_PROC_NUMBER=2
2024-10-08 22:48:14 (7642): Guest Log: ATHENA_CORE_NUMBER=2
2024-10-08 22:48:15 (7642): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-10-08 22:48:15 (7642): Guest Log:  *** Starting ATLAS job. (PandaID=6354376697 taskID=41491228) ***
2024-10-09 00:23:47 (7642): Status Report: Elapsed Time: '6000.000000'
2024-10-09 00:23:47 (7642): Status Report: CPU Time: '9079.370000'
2024-10-09 02:02:48 (7642): Status Report: Elapsed Time: '12000.000000'
2024-10-09 02:02:48 (7642): Status Report: CPU Time: '20941.200000'
2024-10-09 03:41:49 (7642): Status Report: Elapsed Time: '18000.000000'
2024-10-09 03:41:49 (7642): Status Report: CPU Time: '32802.820000'
2024-10-09 05:20:50 (7642): Status Report: Elapsed Time: '24000.000000'
2024-10-09 05:20:50 (7642): Status Report: CPU Time: '44664.890000'
2024-10-09 06:59:51 (7642): Status Report: Elapsed Time: '30000.000000'
2024-10-09 06:59:51 (7642): Status Report: CPU Time: '56529.810000'
2024-10-09 08:38:52 (7642): Status Report: Elapsed Time: '36000.000000'
2024-10-09 08:38:52 (7642): Status Report: CPU Time: '68390.920000'
2024-10-09 10:17:53 (7642): Status Report: Elapsed Time: '42000.000000'
2024-10-09 10:17:53 (7642): Status Report: CPU Time: '80251.550000'
2024-10-09 11:15:42 (7642): Guest Log:  *** Job finished ***
2024-10-09 11:15:42 (7642): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-10-09 11:15:42 (7642): Guest Log: 2024-10-09 08:15:29,758 | INFO     | [data] queue_monitor thread has finished
2024-10-09 11:15:42 (7642): Guest Log: 2024-10-09 08:15:33,183 | INFO     | job.realtimelogging is not enabled
2024-10-09 11:15:42 (7642): Guest Log: 2024-10-09 08:15:34,184 | INFO     | [payload] run_realtimelog thread has finished
2024-10-09 11:15:42 (7642): Guest Log: 2024-10-09 08:15:36,234 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140519819798336)>', '<ExcThread(monitor, started 140519065753344)>']
2024-10-09 11:15:42 (7642): Guest Log: 2024-10-09 08:15:36,932 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-10-09 11:15:42 (7642): Guest Log: 2024-10-09 08:15:36,932 | INFO     | [monitor] control thread has ended
2024-10-09 11:15:42 (7642): Guest Log: 2024-10-09 08:15:41,240 | INFO     | all workflow threads have been joined
2024-10-09 11:15:42 (7642): Guest Log: 2024-10-09 08:15:41,240 | INFO     | end of generic workflow (traces error code: 0)
2024-10-09 11:15:42 (7642): Guest Log: 2024-10-09 08:15:41,240 | INFO     | traces error code: 0
2024-10-09 11:15:42 (7642): Guest Log: 2024-10-09 08:15:41,241 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-10-09 11:15:42 (7642): Guest Log: 2024-10-09 08:15:41,396 [wrapper] ==== pilot stdout END ====
2024-10-09 11:15:42 (7642): Guest Log: 2024-10-09 08:15:41,401 [wrapper] ==== wrapper stdout RESUME ====
2024-10-09 11:15:42 (7642): Guest Log: 2024-10-09 08:15:41,405 [wrapper] pilotpid: 5922
2024-10-09 11:15:42 (7642): Guest Log: 2024-10-09 08:15:41,409 [wrapper] Pilot exit status: 0
2024-10-09 11:15:42 (7642): Guest Log: 2024-10-09 08:15:41,664 [wrapper] pandaids: 6354376697
2024-10-09 11:15:42 (7642): Guest Log: 2024-10-09 08:15:41,688 [wrapper] cleanup supervisor_pilot  1085 5923
2024-10-09 11:15:42 (7642): Guest Log: 2024-10-09 08:15:41,693 [wrapper] Test setup, not cleaning
2024-10-09 11:15:42 (7642): Guest Log: 2024-10-09 08:15:41,697 [wrapper] ==== wrapper stdout END ====
2024-10-09 11:15:42 (7642): Guest Log: 2024-10-09 08:15:41,701 [wrapper] ==== wrapper stderr END ====
2024-10-09 11:15:42 (7642): Guest Log: 2024-10-09 08:15:41,710 [wrapper] apfmon messages muted
2024-10-09 11:15:42 (7642): Guest Log:  *** Error codes and diagnostics ***
2024-10-09 11:15:42 (7642): Guest Log:     "exeErrorCode": 0,
2024-10-09 11:15:42 (7642): Guest Log:     "exeErrorDiag": "",
2024-10-09 11:15:42 (7642): Guest Log:     "pilotErrorCode": 0,
2024-10-09 11:15:42 (7642): Guest Log:     "pilotErrorDiag": "",
2024-10-09 11:15:42 (7642): Guest Log:  *** Listing of results directory ***
2024-10-09 11:15:42 (7642): Guest Log: total 279896
2024-10-09 11:15:42 (7642): Guest Log: -rw-r--r--. 1 atlas atlas    484599 Oct  2 15:04 pilot3.tar.gz
2024-10-09 11:15:42 (7642): Guest Log: -rw-r--r--. 1 atlas atlas      5653 Oct  2 15:27 queuedata.json
2024-10-09 11:15:42 (7642): Guest Log: -rwx------. 1 atlas atlas     33814 Oct  2 15:27 runpilot2-wrapper.sh
2024-10-09 11:15:42 (7642): Guest Log: -rw-r--r--. 1 atlas atlas    498200 Oct  8 19:47 input.tar.gz
2024-10-09 11:15:42 (7642): Guest Log: -rw-r--r--. 1 atlas atlas     17537 Oct  8 19:47 start_atlas.sh
2024-10-09 11:15:42 (7642): Guest Log: -rw-r--r--. 1 atlas atlas      9264 Oct  8 19:47 init_data.xml
2024-10-09 11:15:42 (7642): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct  8 19:47 EVNT.41491226._000003.pool.root.1 -> /data/./ATLAS.root_0
2024-10-09 11:15:42 (7642): Guest Log: -rw-r--r--. 1 atlas atlas      2675 Oct  8 19:48 pandaJob.out
2024-10-09 11:15:42 (7642): Guest Log: -rw-------. 1 atlas atlas       424 Oct  8 19:48 setup.sh.local
2024-10-09 11:15:42 (7642): Guest Log: -rw-------. 1 atlas atlas   1023924 Oct  8 19:49 agis_schedconf.cvmfs.json
2024-10-09 11:15:42 (7642): Guest Log: drwx------. 4 atlas atlas      4096 Oct  8 19:50 pilot3
2024-10-09 11:15:42 (7642): Guest Log: -rw-------. 1 atlas atlas 272373418 Oct  9 08:14 HITS.41491228._000113.pool.root.1
2024-10-09 11:15:42 (7642): Guest Log: -rw-------. 1 atlas atlas        95 Oct  9 08:14 pilot_heartbeat.json
2024-10-09 11:15:42 (7642): Guest Log: -rw-------. 1 atlas atlas      1030 Oct  9 08:15 memory_monitor_summary.json
2024-10-09 11:15:42 (7642): Guest Log: -rw-------. 1 atlas atlas   1617228 Oct  9 08:15 agis_ddmendpoints.agis.ALL.json
2024-10-09 11:15:42 (7642): Guest Log: -rw-------. 1 atlas atlas    591274 Oct  9 08:15 log.41491228._000113.job.log.tgz.1
2024-10-09 11:15:42 (7642): Guest Log: -rw-------. 1 atlas atlas      7731 Oct  9 08:15 heartbeat.json
2024-10-09 11:15:42 (7642): Guest Log: -rw-------. 1 atlas atlas      4343 Oct  9 08:15 pilotlog.txt
2024-10-09 11:15:42 (7642): Guest Log: -rw-------. 1 atlas atlas   4628329 Oct  9 08:15 log.41491228._000113.job.log.1
2024-10-09 11:15:42 (7642): Guest Log: -rw-------. 1 atlas atlas       357 Oct  9 08:15 output.list
2024-10-09 11:15:42 (7642): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct  9 08:15 runtime_log
2024-10-09 11:15:42 (7642): Guest Log: -rw-------. 1 atlas atlas   5242880 Oct  9 08:15 result.tar.gz
2024-10-09 11:15:42 (7642): Guest Log: -rw-r--r--. 1 atlas atlas     10943 Oct  9 08:15 runtime_log.err
2024-10-09 11:15:42 (7642): Guest Log: -rw-------. 1 atlas atlas       653 Oct  9 08:15 lZNMDmFRGG6n9Rq4apOajLDm4fhM0noT9bVorHsSDmuCbKDmDfEKHn.diag
2024-10-09 11:15:42 (7642): Guest Log: Looking for outputfile HITS.41491228._000113.pool.root.1
2024-10-09 11:15:42 (7642): Guest Log: HITS file was successfully produced
2024-10-09 11:15:42 (7642): Guest Log: -rw-------. 1 atlas atlas 272373418 Oct  9 08:14 /home/atlas/RunAtlas/HITS.41491228._000113.pool.root.1
2024-10-09 11:15:42 (7642): Guest Log: Successfully finished the ATLAS job!
2024-10-09 11:15:42 (7642): Guest Log: Copying the results back to the shared directory!
2024-10-09 11:15:42 (7642): Guest Log:  *** Contents of shared directory: ***
2024-10-09 11:15:42 (7642): Guest Log: total 313800
2024-10-09 11:15:42 (7642): Guest Log: -rw-r--r--. 1 root root 315553921 Oct  8 19:44 ATLAS.root_0
2024-10-09 11:15:42 (7642): Guest Log: -rw-r--r--. 1 root root      9264 Oct  8 19:44 init_data.xml
2024-10-09 11:15:42 (7642): Guest Log: -rw-r--r--. 1 root root    498200 Oct  8 19:44 input.tar.gz
2024-10-09 11:15:42 (7642): Guest Log: -rw-r--r--. 1 root root   5242880 Oct  9 08:15 result.tar.gz
2024-10-09 11:15:42 (7642): Guest Log: -rw-r--r--. 1 root root     17537 Oct  8 19:44 start_atlas.sh
2024-10-09 11:15:42 (7642): Guest Log:  *** Success! Shutting down the machine. ***
2024-10-09 11:15:42 (7642): VM Completion File Detected.
2024-10-09 11:15:42 (7642): Powering off VM.
2024-10-09 11:15:43 (7642): Successfully stopped VM.
2024-10-09 11:15:43 (7642): Deregistering VM. (boinc_eac60a858a9a1ee8, slot#6)
2024-10-09 11:15:43 (7642): Removing network bandwidth throttle group from VM.
2024-10-09 11:15:43 (7642): Removing VM from VirtualBox.
11:15:48 (7642): called boinc_finish(0)

</stderr_txt>
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