Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
2024-10-02 11:42:39 (1598756): Detected: vboxwrapper 26206
2024-10-02 11:42:39 (1598756): Detected: BOINC client v7.16.6
2024-10-02 11:42:40 (1598756): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2024-10-02 11:42:40 (1598756): Successfully copied 'init_data.xml' to the shared directory.
2024-10-02 11:42:40 (1598756): Create VM. (boinc_db35b8b57cb9c323, slot#0)
2024-10-02 11:42:41 (1598756): Setting Memory Size for VM. (4800MB)
2024-10-02 11:42:41 (1598756): Setting CPU Count for VM. (8)
2024-10-02 11:42:41 (1598756): Setting Chipset Options for VM.
2024-10-02 11:42:41 (1598756): Setting Graphics Controller Options for VM.
2024-10-02 11:42:41 (1598756): Setting Boot Options for VM.
2024-10-02 11:42:41 (1598756): Setting Network Configuration for NAT.
2024-10-02 11:42:41 (1598756): Enabling VM Network Access.
2024-10-02 11:42:41 (1598756): Disabling USB Support for VM.
2024-10-02 11:42:41 (1598756): Disabling COM Port Support for VM.
2024-10-02 11:42:41 (1598756): Disabling LPT Port Support for VM.
2024-10-02 11:42:42 (1598756): Disabling Audio Support for VM.
2024-10-02 11:42:42 (1598756): Disabling Clipboard Support for VM.
2024-10-02 11:42:42 (1598756): Disabling Drag and Drop Support for VM.
2024-10-02 11:42:42 (1598756): Adding storage controller(s) to VM.
2024-10-02 11:42:42 (1598756): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-10-02 11:42:43 (1598756): Adding VirtualBox Guest Additions to VM.
2024-10-02 11:42:43 (1598756): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-10-02 11:42:43 (1598756): forwarding host port 50427 to guest port 80
2024-10-02 11:42:43 (1598756): Enabling remote desktop for VM.
2024-10-02 11:42:43 (1598756): Required extension pack not installed, remote desktop not enabled.
2024-10-02 11:42:43 (1598756): Enabling shared directory for VM.
2024-10-02 11:42:43 (1598756): Starting VM using VBoxManage interface. (boinc_db35b8b57cb9c323, slot#0)
2024-10-02 11:42:45 (1598756): Successfully started VM. (PID = '1599328')
2024-10-02 11:42:45 (1598756): Reporting VM Process ID to BOINC.
2024-10-02 11:42:45 (1598756): Guest Log: BIOS: VirtualBox 6.1.50
2024-10-02 11:42:45 (1598756): Guest Log: CPUID EDX: 0x178bfbff
2024-10-02 11:42:45 (1598756): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-10-02 11:42:45 (1598756): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-10-02 11:42:45 (1598756): VM state change detected. (old = 'poweredoff', new = 'running')
2024-10-02 11:42:45 (1598756): Detected: Web Application Enabled (http://localhost:50427)
2024-10-02 11:42:45 (1598756): Preference change detected
2024-10-02 11:42:45 (1598756): Setting CPU throttle for VM. (100%)
2024-10-02 11:42:45 (1598756): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2024-10-02 11:42:47 (1598756): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-10-02 11:42:47 (1598756): Guest Log: BIOS: Booting from Hard Disk...
2024-10-02 11:43:18 (1598756): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-10-02 11:43:18 (1598756): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-10-02 11:43:18 (1598756): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-10-02 11:43:18 (1598756): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-10-02 11:43:18 (1598756): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-10-02 11:43:18 (1598756): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-10-02 11:43:18 (1598756): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-10-02 11:43:18 (1598756): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-10-02 11:43:18 (1598756): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-10-02 11:43:18 (1598756): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-10-02 11:43:18 (1598756): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-10-02 11:43:18 (1598756): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-10-02 11:43:18 (1598756): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-10-02 11:43:18 (1598756): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-10-02 11:43:18 (1598756): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-10-02 11:43:18 (1598756): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-10-02 11:43:18 (1598756): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-10-02 11:43:18 (1598756): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-10-02 11:43:18 (1598756): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-10-02 11:43:18 (1598756): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-10-02 11:43:18 (1598756): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-10-02 11:43:18 (1598756): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-10-02 11:43:18 (1598756): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-10-02 11:43:18 (1598756): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-10-02 11:43:18 (1598756): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-10-02 11:43:18 (1598756): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-10-02 11:43:18 (1598756): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-10-02 11:43:18 (1598756): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-10-02 11:43:18 (1598756): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-10-02 11:43:18 (1598756): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-10-02 11:43:18 (1598756): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-10-02 11:43:18 (1598756): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-10-02 11:43:28 (1598756): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-10-02 11:43:28 (1598756): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-10-02 11:43:42 (1598756): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-10-02 11:43:42 (1598756): Guest Log: 00:00:00.000419 main     Log opened 2024-10-02T15:43:40.588520000Z
2024-10-02 11:43:42 (1598756): Guest Log: 00:00:00.000656 main     OS Product: Linux
2024-10-02 11:43:42 (1598756): Guest Log: 00:00:00.000776 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-10-02 11:43:42 (1598756): Guest Log: 00:00:00.000851 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-10-02 11:43:42 (1598756): Guest Log: 00:00:00.000920 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-10-02 11:43:42 (1598756): Guest Log: 00:00:00.000923 main     Process ID: 1336
2024-10-02 11:43:42 (1598756): Guest Log: 00:00:00.000924 main     Package type: LINUX_64BITS_GENERIC
2024-10-02 11:43:42 (1598756): Guest Log: 00:00:00.006377 main     5.2.32 r132073 started. Verbose level = 0
2024-10-02 11:43:42 (1598756): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-10-02 11:43:42 (1598756): Guest Log: [INFO] Mounting shared directory
2024-10-02 11:43:42 (1598756): Guest Log: [INFO] Checking for init_data.xml
2024-10-02 11:43:50 (1598756): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-10-02 11:43:50 (1598756): Guest Log: [INFO] Detected branch: prod
2024-10-02 11:43:50 (1598756): Guest Log: This is the prod version of the ATLAS job wrapper
2024-10-02 11:43:50 (1598756): Guest Log: Copying input files
2024-10-02 11:44:04 (1598756): Guest Log: Copied input files into RunAtlas.
2024-10-02 11:44:04 (1598756): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-10-02 11:44:04 (1598756): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-10-02 11:44:04 (1598756): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-10-02 11:44:04 (1598756): Guest Log: Further information can be found at the LHC@home message board.
2024-10-02 11:44:21 (1598756): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-10-02 11:44:21 (1598756): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-10-02 11:44:21 (1598756): Guest Log: 2.6.3.0 1614 0 30172 137896 3 1 3117398 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-10-02 11:44:25 (1598756): Guest Log: copied the webapp to /var/www
2024-10-02 11:44:25 (1598756): Guest Log: ATHENA_PROC_NUMBER=8
2024-10-02 11:44:25 (1598756): Guest Log: ATHENA_CORE_NUMBER=8
2024-10-02 11:44:25 (1598756): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-10-02 11:44:25 (1598756): Guest Log:  *** Starting ATLAS job. (PandaID=6354299757 taskID=41481181) ***
2024-10-02 12:41:35 (1598756): Preference change detected
2024-10-02 12:41:35 (1598756): Setting CPU throttle for VM. (100%)
2024-10-02 12:41:35 (1598756): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2024-10-02 13:21:46 (1598756): Status Report: Elapsed Time: '6000.000000'
2024-10-02 13:21:46 (1598756): Status Report: CPU Time: '34558.870000'
2024-10-02 15:00:47 (1598756): Status Report: Elapsed Time: '12000.000000'
2024-10-02 15:00:47 (1598756): Status Report: CPU Time: '79878.590000'
2024-10-02 16:39:47 (1598756): Status Report: Elapsed Time: '18000.000000'
2024-10-02 16:39:47 (1598756): Status Report: CPU Time: '125182.990000'
2024-10-02 17:29:28 (1598756): Guest Log:  *** Job finished ***
2024-10-02 17:29:28 (1598756): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-10-02 17:29:28 (1598756): Guest Log: 2024-10-02 21:29:16,192 | INFO     | [data] copytool_out thread has finished
2024-10-02 17:29:28 (1598756): Guest Log: 2024-10-02 21:29:17,004 | INFO     | [job] queue monitor thread has finished
2024-10-02 17:29:28 (1598756): Guest Log: 2024-10-02 21:29:19,628 | INFO     | [data] queue_monitor thread has finished
2024-10-02 17:29:28 (1598756): Guest Log: 2024-10-02 21:29:19,938 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139888259426112)>', '<ExcThread(monitor, started 139887546197760)>']
2024-10-02 17:29:28 (1598756): Guest Log: 2024-10-02 21:29:20,097 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-10-02 17:29:28 (1598756): Guest Log: 2024-10-02 21:29:20,097 | INFO     | [monitor] control thread has ended
2024-10-02 17:29:28 (1598756): Guest Log: 2024-10-02 21:29:24,949 | INFO     | all workflow threads have been joined
2024-10-02 17:29:28 (1598756): Guest Log: 2024-10-02 21:29:24,949 | INFO     | end of generic workflow (traces error code: 0)
2024-10-02 17:29:28 (1598756): Guest Log: 2024-10-02 21:29:24,950 | INFO     | traces error code: 0
2024-10-02 17:29:28 (1598756): Guest Log: 2024-10-02 21:29:24,950 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-10-02 17:29:28 (1598756): Guest Log: 2024-10-02 21:29:25,160 [wrapper] ==== pilot stdout END ====
2024-10-02 17:29:28 (1598756): Guest Log: 2024-10-02 21:29:25,178 [wrapper] ==== wrapper stdout RESUME ====
2024-10-02 17:29:28 (1598756): Guest Log: 2024-10-02 21:29:25,195 [wrapper] pilotpid: 6008
2024-10-02 17:29:28 (1598756): Guest Log: 2024-10-02 21:29:25,213 [wrapper] Pilot exit status: 0
2024-10-02 17:29:28 (1598756): Guest Log: 2024-10-02 21:29:25,408 [wrapper] pandaids: 6354299757
2024-10-02 17:29:28 (1598756): Guest Log: 2024-10-02 21:29:25,518 [wrapper] cleanup supervisor_pilot 25394 6009
2024-10-02 17:29:28 (1598756): Guest Log: 2024-10-02 21:29:25,535 [wrapper] Test setup, not cleaning
2024-10-02 17:29:28 (1598756): Guest Log: 2024-10-02 21:29:25,553 [wrapper] ==== wrapper stdout END ====
2024-10-02 17:29:28 (1598756): Guest Log: 2024-10-02 21:29:25,572 [wrapper] ==== wrapper stderr END ====
2024-10-02 17:29:28 (1598756): Guest Log: 2024-10-02 21:29:25,612 [wrapper] apfmon messages muted
2024-10-02 17:29:28 (1598756): Guest Log:  *** Error codes and diagnostics ***
2024-10-02 17:29:28 (1598756): Guest Log:     "exeErrorCode": 0,
2024-10-02 17:29:28 (1598756): Guest Log:     "exeErrorDiag": "",
2024-10-02 17:29:28 (1598756): Guest Log:     "pilotErrorCode": 0,
2024-10-02 17:29:28 (1598756): Guest Log:     "pilotErrorDiag": "",
2024-10-02 17:29:28 (1598756): Guest Log:  *** Listing of results directory ***
2024-10-02 17:29:28 (1598756): Guest Log: total 261792
2024-10-02 17:29:28 (1598756): Guest Log: -rw-r--r--. 1 atlas atlas    484599 Oct  2 13:46 pilot3.tar.gz
2024-10-02 17:29:28 (1598756): Guest Log: -rw-r--r--. 1 atlas atlas      5653 Oct  2 13:49 queuedata.json
2024-10-02 17:29:28 (1598756): Guest Log: -rwx------. 1 atlas atlas     33814 Oct  2 13:49 runpilot2-wrapper.sh
2024-10-02 17:29:28 (1598756): Guest Log: -rw-r--r--. 1 atlas atlas     17537 Oct  2 15:43 start_atlas.sh
2024-10-02 17:29:28 (1598756): Guest Log: -rw-r--r--. 1 atlas atlas      5901 Oct  2 15:43 init_data.xml
2024-10-02 17:29:28 (1598756): Guest Log: -rw-r--r--. 1 atlas atlas    498171 Oct  2 15:43 input.tar.gz
2024-10-02 17:29:28 (1598756): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct  2 15:44 EVNT.41466530._000027.pool.root.1 -> /data/./ATLAS.root_0
2024-10-02 17:29:28 (1598756): Guest Log: -rw-r--r--. 1 atlas atlas      2531 Oct  2 15:44 pandaJob.out
2024-10-02 17:29:28 (1598756): Guest Log: -rw-------. 1 atlas atlas       424 Oct  2 15:44 setup.sh.local
2024-10-02 17:29:28 (1598756): Guest Log: -rw-------. 1 atlas atlas   1022906 Oct  2 15:45 agis_schedconf.cvmfs.json
2024-10-02 17:29:28 (1598756): Guest Log: drwx------. 4 atlas atlas      4096 Oct  2 15:45 pilot3
2024-10-02 17:29:28 (1598756): Guest Log: -rw-------. 1 atlas atlas 260074065 Oct  2 21:27 HITS.41481181._002644.pool.root.1
2024-10-02 17:29:28 (1598756): Guest Log: -rw-------. 1 atlas atlas      1041 Oct  2 21:28 memory_monitor_summary.json
2024-10-02 17:29:28 (1598756): Guest Log: -rw-------. 1 atlas atlas   1615815 Oct  2 21:28 agis_ddmendpoints.agis.ALL.json
2024-10-02 17:29:28 (1598756): Guest Log: -rw-------. 1 atlas atlas    442960 Oct  2 21:28 log.41481181._002644.job.log.tgz.1
2024-10-02 17:29:28 (1598756): Guest Log: -rw-------. 1 atlas atlas        95 Oct  2 21:28 pilot_heartbeat.json
2024-10-02 17:29:28 (1598756): Guest Log: -rw-------. 1 atlas atlas      7765 Oct  2 21:29 heartbeat.json
2024-10-02 17:29:28 (1598756): Guest Log: -rw-------. 1 atlas atlas      4394 Oct  2 21:29 pilotlog.txt
2024-10-02 17:29:28 (1598756): Guest Log: -rw-------. 1 atlas atlas   1661560 Oct  2 21:29 log.41481181._002644.job.log.1
2024-10-02 17:29:28 (1598756): Guest Log: -rw-------. 1 atlas atlas       357 Oct  2 21:29 output.list
2024-10-02 17:29:28 (1598756): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct  2 21:29 runtime_log
2024-10-02 17:29:28 (1598756): Guest Log: -rw-------. 1 atlas atlas   2119680 Oct  2 21:29 result.tar.gz
2024-10-02 17:29:28 (1598756): Guest Log: -rw-r--r--. 1 atlas atlas     10937 Oct  2 21:29 runtime_log.err
2024-10-02 17:29:28 (1598756): Guest Log: -rw-------. 1 atlas atlas       652 Oct  2 21:29 oGUMDmFuEG6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmRsnKDm81tKen.diag
2024-10-02 17:29:28 (1598756): Guest Log: Looking for outputfile HITS.41481181._002644.pool.root.1
2024-10-02 17:29:28 (1598756): Guest Log: HITS file was successfully produced
2024-10-02 17:29:29 (1598756): Guest Log: -rw-------. 1 atlas atlas 260074065 Oct  2 21:27 /home/atlas/RunAtlas/HITS.41481181._002644.pool.root.1
2024-10-02 17:29:29 (1598756): Guest Log: Successfully finished the ATLAS job!
2024-10-02 17:29:29 (1598756): Guest Log: Copying the results back to the shared directory!
2024-10-02 17:29:29 (1598756): Guest Log:  *** Contents of shared directory: ***
2024-10-02 17:29:29 (1598756): Guest Log: total 623260
2024-10-02 17:29:29 (1598756): Guest Log: -rw-r--r--. 1 root root 635563168 Oct  2 15:42 ATLAS.root_0
2024-10-02 17:29:29 (1598756): Guest Log: -rw-r--r--. 1 root root      5901 Oct  2 15:42 init_data.xml
2024-10-02 17:29:29 (1598756): Guest Log: -rw-r--r--. 1 root root    498171 Oct  2 15:42 input.tar.gz
2024-10-02 17:29:29 (1598756): Guest Log: -rw-r--r--. 1 root root   2119680 Oct  2 21:29 result.tar.gz
2024-10-02 17:29:29 (1598756): Guest Log: -rw-r--r--. 1 root root     17537 Oct  2 15:42 start_atlas.sh
2024-10-02 17:29:29 (1598756): Guest Log:  *** Success! Shutting down the machine. ***
2024-10-02 17:29:29 (1598756): VM Completion File Detected.
2024-10-02 17:29:29 (1598756): Powering off VM.
2024-10-02 17:29:30 (1598756): Successfully stopped VM.
2024-10-02 17:29:30 (1598756): Deregistering VM. (boinc_db35b8b57cb9c323, slot#0)
2024-10-02 17:29:30 (1598756): Removing network bandwidth throttle group from VM.
2024-10-02 17:29:30 (1598756): Removing VM from VirtualBox.
17:29:35 (1598756): called boinc_finish(0)

</stderr_txt>
]]>

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