Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:59:05 (23484): wrapper (7.7.26015): starting
07:59:05 (23484): wrapper: running run_atlas (--nthreads 8)
[2024-10-03 07:59:05] Arguments: --nthreads 8
[2024-10-03 07:59:05] Threads: 8
[2024-10-03 07:59:05] Checking for CVMFS
[2024-10-03 07:59:06] Probing /cvmfs/atlas.cern.ch... OK
[2024-10-03 07:59:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-10-03 07:59:06] Running cvmfs_config stat atlas.cern.ch
[2024-10-03 07:59:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-10-03 07:59:07] 2.11.2.0 19439 53891 92424 137917 2 212 16262838 25165824 3940 130560 0 36409893 99.943 19671883 9491 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2024-10-03 07:59:07] CVMFS is ok
[2024-10-03 07:59:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-10-03 07:59:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-10-03 07:59:07] Further information can be found at the LHC@home message board.
[2024-10-03 07:59:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-10-03 07:59:07] Checking for apptainer binary...
[2024-10-03 07:59:07] Using apptainer found in PATH at /usr/bin/apptainer
[2024-10-03 07:59:07] Running /usr/bin/apptainer --version
[2024-10-03 07:59:07] apptainer version 1.3.2-1.el7
[2024-10-03 07:59:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-10-03 07:59:09] cg-vwn309.simple-grid.lan
[2024-10-03 07:59:09] apptainer works
[2024-10-03 07:59:09] Set ATHENA_PROC_NUMBER=8
[2024-10-03 07:59:09] Set ATHENA_CORE_NUMBER=8
[2024-10-03 07:59:09] Starting ATLAS job with PandaID=6354280941
[2024-10-03 07:59:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-10-03 15:01:58]  *** The last 200 lines of the pilot log: ***
[2024-10-03 15:01:58] 2024-10-03 13:01:45,464 | INFO     | current chi2=6.997157683122906 (change=-0.0267475200362876 %)
[2024-10-03 15:01:58] 2024-10-03 13:01:45,464 | INFO     | right removable region: 401
[2024-10-03 15:01:58] 2024-10-03 13:01:45,465 | INFO     | model: linear, x: [1727935982.0, 1727936043.0, 1727936104.0, 1727936165.0, 1727936226.0, 1727936287.0, 1727936348.0, 1727936409.0, 1727936470.0, 1727936531.0, 1727
[2024-10-03 15:01:58] 2024-10-03 13:01:45,465 | INFO     | sum of square deviations: 20144379560.5
[2024-10-03 15:01:58] 2024-10-03 13:01:45,470 | INFO     | sum of deviations: 182390480558.0
[2024-10-03 15:01:58] 2024-10-03 13:01:45,471 | INFO     | mean x: 1727948212.5
[2024-10-03 15:01:58] 2024-10-03 13:01:45,471 | INFO     | mean y: 2509149.104477612
[2024-10-03 15:01:58] 2024-10-03 13:01:45,471 | INFO     | -- intersect: -15642614291.440422
[2024-10-03 15:01:58] 2024-10-03 13:01:45,471 | INFO     | intersect: -15642614291.440422
[2024-10-03 15:01:58] 2024-10-03 13:01:45,472 | INFO     | chi2: 3.123864827232097
[2024-10-03 15:01:58] 2024-10-03 13:01:45,473 | INFO     | current chi2=3.123864827232097 (change=55.343290445784554 %)
[2024-10-03 15:01:58] 2024-10-03 13:01:45,473 | INFO     | model: linear, x: [1727936287.0, 1727936348.0, 1727936409.0, 1727936470.0, 1727936531.0, 1727936592.0, 1727936653.0, 1727936714.0, 1727936775.0, 1727936836.0, 1727
[2024-10-03 15:01:58] 2024-10-03 13:01:45,473 | INFO     | sum of square deviations: 19402030758.0
[2024-10-03 15:01:58] 2024-10-03 13:01:45,478 | INFO     | sum of deviations: 101143500980.00002
[2024-10-03 15:01:58] 2024-10-03 13:01:45,479 | INFO     | mean x: 1727948365.0
[2024-10-03 15:01:58] 2024-10-03 13:01:45,479 | INFO     | mean y: 2525833.2544080606
[2024-10-03 15:01:58] 2024-10-03 13:01:45,479 | INFO     | -- intersect: -9005332639.328627
[2024-10-03 15:01:58] 2024-10-03 13:01:45,479 | INFO     | intersect: -9005332639.328627
[2024-10-03 15:01:58] 2024-10-03 13:01:45,480 | INFO     | chi2: 1.694257278176352
[2024-10-03 15:01:58] 2024-10-03 13:01:45,480 | INFO     | current chi2=1.694257278176352 (change=45.764065608512574 %)
[2024-10-03 15:01:58] 2024-10-03 13:01:45,480 | INFO     | model: linear, x: [1727936592.0, 1727936653.0, 1727936714.0, 1727936775.0, 1727936836.0, 1727936897.0, 1727936958.0, 1727937019.0, 1727937080.0, 1727937141.0, 1727
[2024-10-03 15:01:58] 2024-10-03 13:01:45,481 | INFO     | sum of square deviations: 18678147418.0
[2024-10-03 15:01:58] 2024-10-03 13:01:45,486 | INFO     | sum of deviations: 18398810057.000008
[2024-10-03 15:01:58] 2024-10-03 13:01:45,487 | INFO     | mean x: 1727948517.5
[2024-10-03 15:01:58] 2024-10-03 13:01:45,487 | INFO     | mean y: 2543245.2704081633
[2024-10-03 15:01:58] 2024-10-03 13:01:45,487 | INFO     | -- intersect: -1699563277.9450223
[2024-10-03 15:01:58] 2024-10-03 13:01:45,487 | INFO     | intersect: -1699563277.9450223
[2024-10-03 15:01:58] 2024-10-03 13:01:45,488 | INFO     | chi2: 0.15438593109544096
[2024-10-03 15:01:58] 2024-10-03 13:01:45,488 | INFO     | current chi2=0.15438593109544096 (change=90.8876926140983 %)
[2024-10-03 15:01:58] 2024-10-03 13:01:45,489 | INFO     | model: linear, x: [1727936897.0, 1727936958.0, 1727937019.0, 1727937080.0, 1727937141.0, 1727937202.0, 1727937263.0, 1727937324.0, 1727937385.0, 1727937446.0, 1727
[2024-10-03 15:01:58] 2024-10-03 13:01:45,489 | INFO     | sum of square deviations: 17972496978.0
[2024-10-03 15:01:58] 2024-10-03 13:01:45,494 | INFO     | sum of deviations: -5810972484.0
[2024-10-03 15:01:58] 2024-10-03 13:01:45,494 | INFO     | mean x: 1727948670.0
[2024-10-03 15:01:58] 2024-10-03 13:01:45,494 | INFO     | mean y: 2548469.9457364343
[2024-10-03 15:01:58] 2024-10-03 13:01:45,494 | INFO     | -- intersect: 561238906.0841086
[2024-10-03 15:01:58] 2024-10-03 13:01:45,494 | INFO     | intersect: 561238906.0841086
[2024-10-03 15:01:58] 2024-10-03 13:01:45,495 | INFO     | chi2: 0.017301963218267803
[2024-10-03 15:01:58] 2024-10-03 13:01:45,495 | INFO     | current chi2=0.017301963218267803 (change=88.79304409702218 %)
[2024-10-03 15:01:58] 2024-10-03 13:01:45,496 | INFO     | model: linear, x: [1727937202.0, 1727937263.0, 1727937324.0, 1727937385.0, 1727937446.0, 1727937507.0, 1727937568.0, 1727937629.0, 1727937690.0, 1727937751.0, 1727
[2024-10-03 15:01:58] 2024-10-03 13:01:45,496 | INFO     | sum of square deviations: 17284846875.5
[2024-10-03 15:01:58] 2024-10-03 13:01:45,501 | INFO     | sum of deviations: -9426016581.999998
[2024-10-03 15:01:58] 2024-10-03 13:01:45,501 | INFO     | mean x: 1727948822.5
[2024-10-03 15:01:58] 2024-10-03 13:01:45,502 | INFO     | mean y: 2549269.157068063
[2024-10-03 15:01:58] 2024-10-03 13:01:45,502 | INFO     | -- intersect: 944858701.8671114
[2024-10-03 15:01:58] 2024-10-03 13:01:45,502 | INFO     | intersect: 944858701.8671114
[2024-10-03 15:01:58] 2024-10-03 13:01:45,503 | INFO     | chi2: 0.013093815093477321
[2024-10-03 15:01:58] 2024-10-03 13:01:45,503 | INFO     | current chi2=0.013093815093477321 (change=24.321795577206085 %)
[2024-10-03 15:01:58] 2024-10-03 13:01:45,503 | INFO     | left removable region: 50
[2024-10-03 15:01:58] 2024-10-03 13:01:45,503 | INFO     | model: linear, x: [1727938727.0, 1727938788.0, 1727938849.0, 1727938910.0, 1727938971.0, 1727939032.0, 1727939093.0, 1727939154.0, 1727939215.0, 1727939276.0, 1727
[2024-10-03 15:01:58] 2024-10-03 13:01:45,504 | INFO     | sum of square deviations: 13408995600.0
[2024-10-03 15:01:58] 2024-10-03 13:01:45,508 | INFO     | sum of deviations: -7195531574.0
[2024-10-03 15:01:58] 2024-10-03 13:01:45,508 | INFO     | mean x: 1727949402.0
[2024-10-03 15:01:58] 2024-10-03 13:01:45,508 | INFO     | mean y: 2548674.2165242163
[2024-10-03 15:01:58] 2024-10-03 13:01:45,508 | INFO     | -- intersect: 929800412.6215558
[2024-10-03 15:01:58] 2024-10-03 13:01:45,508 | INFO     | intersect: 929800412.6215558
[2024-10-03 15:01:58] 2024-10-03 13:01:45,509 | INFO     | chi2: 0.01150321555229392
[2024-10-03 15:01:58] 2024-10-03 13:01:45,509 | INFO     | -- intersect: 929800412.6215558
[2024-10-03 15:01:58] 2024-10-03 13:01:45,509 | INFO     | current memory leak: -0.54 B/s (using 351 data points, chi2=0.01)
[2024-10-03 15:01:58] 2024-10-03 13:01:45,511 | INFO     | ..............................
[2024-10-03 15:01:58] 2024-10-03 13:01:45,511 | INFO     | . Timing measurements:
[2024-10-03 15:01:58] 2024-10-03 13:01:45,511 | INFO     | . get job = 0 s
[2024-10-03 15:01:58] 2024-10-03 13:01:45,511 | INFO     | . initial setup = 5 s
[2024-10-03 15:01:58] 2024-10-03 13:01:45,511 | INFO     | . payload setup = 132 s
[2024-10-03 15:01:58] 2024-10-03 13:01:45,511 | INFO     | . stage-in = 0 s
[2024-10-03 15:01:58] 2024-10-03 13:01:45,511 | INFO     | . payload execution = 24969 s
[2024-10-03 15:01:58] 2024-10-03 13:01:45,511 | INFO     | . stage-out = 2 s
[2024-10-03 15:01:58] 2024-10-03 13:01:45,511 | INFO     | . log creation = 0 s
[2024-10-03 15:01:58] 2024-10-03 13:01:45,512 | INFO     | ..............................
[2024-10-03 15:01:58] 2024-10-03 13:01:45,649 | INFO     | 
[2024-10-03 15:01:58] 2024-10-03 13:01:45,649 | INFO     | job summary report
[2024-10-03 15:01:58] 2024-10-03 13:01:45,649 | INFO     | --------------------------------------------------
[2024-10-03 15:01:58] 2024-10-03 13:01:45,649 | INFO     | PanDA job id: 6354280941
[2024-10-03 15:01:58] 2024-10-03 13:01:45,649 | INFO     | task id: 41481123
[2024-10-03 15:01:58] 2024-10-03 13:01:45,649 | INFO     | errors: (none)
[2024-10-03 15:01:58] 2024-10-03 13:01:45,650 | INFO     | status: LOG_TRANSFER = DONE 
[2024-10-03 15:01:58] 2024-10-03 13:01:45,650 | INFO     | pilot state: finished 
[2024-10-03 15:01:58] 2024-10-03 13:01:45,650 | INFO     | transexitcode: 0
[2024-10-03 15:01:58] 2024-10-03 13:01:45,650 | INFO     | exeerrorcode: 0
[2024-10-03 15:01:58] 2024-10-03 13:01:45,650 | INFO     | exeerrordiag: 
[2024-10-03 15:01:58] 2024-10-03 13:01:45,650 | INFO     | exitcode: 0
[2024-10-03 15:01:58] 2024-10-03 13:01:45,650 | INFO     | exitmsg: OK
[2024-10-03 15:01:58] 2024-10-03 13:01:45,650 | INFO     | cpuconsumptiontime: 92359 s
[2024-10-03 15:01:58] 2024-10-03 13:01:45,650 | INFO     | nevents: 400
[2024-10-03 15:01:58] 2024-10-03 13:01:45,651 | INFO     | neventsw: 0
[2024-10-03 15:01:58] 2024-10-03 13:01:45,651 | INFO     | pid: 8344
[2024-10-03 15:01:58] 2024-10-03 13:01:45,651 | INFO     | pgrp: 8344
[2024-10-03 15:01:58] 2024-10-03 13:01:45,651 | INFO     | corecount: 8
[2024-10-03 15:01:58] 2024-10-03 13:01:45,651 | INFO     | event service: False
[2024-10-03 15:01:58] 2024-10-03 13:01:45,651 | INFO     | sizes: {0: 2435216, 1: 2435415, 12: 2435415, 22: 2435443, 33: 2435471, 44: 2435499, 55: 2435655, 65: 2435683, 76: 2435711, 86: 2435973, 87: 2436001, 25105: 2471267
[2024-10-03 15:01:58] 2024-10-03 13:01:45,651 | INFO     | --------------------------------------------------
[2024-10-03 15:01:58] 2024-10-03 13:01:45,651 | INFO     | 
[2024-10-03 15:01:58] 2024-10-03 13:01:45,651 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2024-10-03 15:01:58] 2024-10-03 13:01:45,696 | INFO     | queue jobs had 0 job(s) [purged]
[2024-10-03 15:01:58] 2024-10-03 13:01:45,696 | INFO     | queue payloads had 0 job(s) [purged]
[2024-10-03 15:01:58] 2024-10-03 13:01:45,697 | INFO     | queue data_in had 0 job(s) [purged]
[2024-10-03 15:01:58] 2024-10-03 13:01:45,697 | INFO     | queue data_out had 0 job(s) [purged]
[2024-10-03 15:01:58] 2024-10-03 13:01:45,697 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-10-03 15:01:58] 2024-10-03 13:01:45,697 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-10-03 15:01:58] 2024-10-03 13:01:45,697 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-10-03 15:01:58] 2024-10-03 13:01:45,697 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-10-03 15:01:58] 2024-10-03 13:01:45,697 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-10-03 15:01:58] 2024-10-03 13:01:45,697 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-10-03 15:01:58] 2024-10-03 13:01:45,697 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-10-03 15:01:58] 2024-10-03 13:01:45,698 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-10-03 15:01:58] 2024-10-03 13:01:45,698 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-10-03 15:01:58] 2024-10-03 13:01:45,698 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-10-03 15:01:58] 2024-10-03 13:01:45,698 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-10-03 15:01:58] 2024-10-03 13:01:45,698 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-10-03 15:01:58] 2024-10-03 13:01:45,698 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-10-03 15:01:58] 2024-10-03 13:01:45,698 | INFO     | queue completed_jobids has 1 job(s)
[2024-10-03 15:01:58] 2024-10-03 13:01:45,698 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-10-03 15:01:58] 2024-10-03 13:01:45,698 | INFO     | queue messages had 0 job(s) [purged]
[2024-10-03 15:01:58] 2024-10-03 13:01:45,699 | INFO     | job 6354280941 has completed (purged errors)
[2024-10-03 15:01:58] 2024-10-03 13:01:45,699 | INFO     | overall cleanup function is called
[2024-10-03 15:01:58] 2024-10-03 13:01:46,709 | INFO     | --- collectZombieJob: --- 10, [8344]
[2024-10-03 15:01:58] 2024-10-03 13:01:46,709 | INFO     | zombie collector waiting for pid 8344
[2024-10-03 15:01:58] 2024-10-03 13:01:46,709 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-10-03 15:01:58] 2024-10-03 13:01:46,710 | INFO     | collected zombie processes
[2024-10-03 15:01:58] 2024-10-03 13:01:46,710 | INFO     | will  attempt to kill all subprocesses of pid=8344
[2024-10-03 15:01:58] 2024-10-03 13:01:46,823 | INFO     | process IDs to be killed: [8344] (in reverse order)
[2024-10-03 15:01:58] 2024-10-03 13:01:46,919 | WARNING  | found no corresponding commands to process id(s)
[2024-10-03 15:01:58] 2024-10-03 13:01:46,919 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-10-03 15:01:58] 2024-10-03 13:01:46,923 | INFO     | did not find any defunct processes belonging to 8344
[2024-10-03 15:01:58] 2024-10-03 13:01:46,927 | INFO     | did not find any defunct processes belonging to 8344
[2024-10-03 15:01:58] 2024-10-03 13:01:46,927 | INFO     | ready for new job
[2024-10-03 15:01:58] 2024-10-03 13:01:46,927 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-10-03 15:01:58] 2024-10-03 13:01:46,930 | INFO     | *************************************
[2024-10-03 15:01:58] 2024-10-03 13:01:46,930 | INFO     | ***  PanDA Pilot version 3.8.2.8  ***
[2024-10-03 15:01:58] 2024-10-03 13:01:46,930 | INFO     | *************************************
[2024-10-03 15:01:58] 2024-10-03 13:01:46,930 | INFO     | 
[2024-10-03 15:01:58] 2024-10-03 13:01:46,931 | INFO     | pilot is running in a VM
[2024-10-03 15:01:58] 2024-10-03 13:01:46,931 | INFO     | architecture information:
[2024-10-03 15:01:58] 2024-10-03 13:01:46,931 | INFO     | executing command: cat /etc/os-release
[2024-10-03 15:01:58] 2024-10-03 13:01:47,003 | INFO     | cat /etc/os-release:
[2024-10-03 15:01:58] NAME="CentOS Linux"
[2024-10-03 15:01:58] VERSION="7 (Core)"
[2024-10-03 15:01:58] ID="centos"
[2024-10-03 15:01:58] ID_LIKE="rhel fedora"
[2024-10-03 15:01:58] VERSION_ID="7"
[2024-10-03 15:01:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-10-03 15:01:58] ANSI_COLOR="0;31"
[2024-10-03 15:01:58] CPE_NAME="cpe:/o:centos:centos:7"
[2024-10-03 15:01:58] HOME_URL="https://www.centos.org/"
[2024-10-03 15:01:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-10-03 15:01:58] 
[2024-10-03 15:01:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-10-03 15:01:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-10-03 15:01:58] REDHAT_SUPPORT_PRODUCT="centos"
[2024-10-03 15:01:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-10-03 15:01:58] 
[2024-10-03 15:01:58] 2024-10-03 13:01:47,003 | INFO     | *************************************
[2024-10-03 15:01:58] 2024-10-03 13:01:47,507 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2024-10-03 15:01:58] 2024-10-03 13:01:47,575 | INFO     | sufficient remaining disk space (488491712512 B)
[2024-10-03 15:01:58] 2024-10-03 13:01:47,576 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-10-03 15:01:58] 2024-10-03 13:01:47,576 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-10-03 15:01:58] 2024-10-03 13:01:47,577 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-10-03 15:01:58] 2024-10-03 13:01:47,580 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-10-03 15:01:58] 2024-10-03 13:01:47,581 | INFO     | found 0 job(s) in 20 queues
[2024-10-03 15:01:58] 2024-10-03 13:01:47,581 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-10-03 15:01:58] 2024-10-03 13:01:47,581 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-10-03 15:01:58] 2024-10-03 13:01:47,615 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-10-03 15:01:58] 2024-10-03 13:01:47,615 | INFO     | aborting loop
[2024-10-03 15:01:58] 2024-10-03 13:01:47,749 | INFO     | all job control threads have been joined
[2024-10-03 15:01:58] 2024-10-03 13:01:48,040 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-10-03 15:01:58] 2024-10-03 13:01:48,119 | INFO     | all data control threads have been joined
[2024-10-03 15:01:58] 2024-10-03 13:01:48,582 | INFO     | [job] retrieve thread has finished
[2024-10-03 15:01:58] 2024-10-03 13:01:48,584 | INFO     | [job] queue monitor thread has finished
[2024-10-03 15:01:58] 2024-10-03 13:01:48,592 | INFO     | [data] copytool_in thread has finished
[2024-10-03 15:01:58] 2024-10-03 13:01:48,621 | INFO     | [job] job monitor thread has finished
[2024-10-03 15:01:58] 2024-10-03 13:01:48,659 | INFO     | all payload control threads have been joined
[2024-10-03 15:01:58] 2024-10-03 13:01:48,701 | INFO     | [payload] failed_post thread has finished
[2024-10-03 15:01:58] 2024-10-03 13:01:48,731 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-10-03 15:01:58] 2024-10-03 13:01:48,755 | INFO     | [job] control thread has finished
[2024-10-03 15:01:58] 2024-10-03 13:01:48,923 | INFO     | [payload] validate_post thread has finished
[2024-10-03 15:01:58] 2024-10-03 13:01:49,125 | INFO     | [data] control thread has finished
[2024-10-03 15:01:58] 2024-10-03 13:01:49,131 | INFO     | [job] validate thread has finished
[2024-10-03 15:01:58] 2024-10-03 13:01:49,288 | INFO     | [payload] execute_payloads thread has finished
[2024-10-03 15:01:58] 2024-10-03 13:01:49,315 | INFO     | [job] create_data_payload thread has finished
[2024-10-03 15:01:58] 2024-10-03 13:01:49,409 | INFO     | [payload] validate_pre thread has finished
[2024-10-03 15:01:58] 2024-10-03 13:01:49,665 | INFO     | [payload] control thread has finished
[2024-10-03 15:01:58] 2024-10-03 13:01:49,706 | INFO     | [payload] run_realtimelog thread has finished
[2024-10-03 15:01:58] 2024-10-03 13:01:50,738 | INFO     | [data] copytool_out thread has finished
[2024-10-03 15:01:58] 2024-10-03 13:01:52,058 | INFO     | [data] queue_monitor thread has finished
[2024-10-03 15:01:58] 2024-10-03 13:01:53,043 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140515237226304)>', '<ExcThread(monitor, started 140514787571456)>']
[2024-10-03 15:01:58] 2024-10-03 13:01:53,616 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-10-03 15:01:58] 2024-10-03 13:01:53,616 | INFO     | [monitor] control thread has ended
[2024-10-03 15:01:58] 2024-10-03 13:01:58,068 | INFO     | all workflow threads have been joined
[2024-10-03 15:01:58] 2024-10-03 13:01:58,068 | INFO     | end of generic workflow (traces error code: 0)
[2024-10-03 15:01:58] 2024-10-03 13:01:58,069 | INFO     | traces error code: 0
[2024-10-03 15:01:58] 2024-10-03 13:01:58,069 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-10-03 15:01:58] 2024-10-03 13:01:58,257 [wrapper] ==== pilot stdout END ====
[2024-10-03 15:01:58] 2024-10-03 13:01:58,265 [wrapper] ==== wrapper stdout RESUME ====
[2024-10-03 15:01:58] 2024-10-03 13:01:58,273 [wrapper] pilotpid: 28995
[2024-10-03 15:01:58] 2024-10-03 13:01:58,279 [wrapper] Pilot exit status: 0
[2024-10-03 15:01:58] 2024-10-03 13:01:58,302 [wrapper] pandaids: 6354280941
[2024-10-03 15:01:58] 2024-10-03 13:01:58,345 [wrapper] cleanup supervisor_pilot 10023 28996
[2024-10-03 15:01:58] 2024-10-03 13:01:58,349 [wrapper] Test setup, not cleaning
[2024-10-03 15:01:58] 2024-10-03 13:01:58,354 [wrapper] ==== wrapper stdout END ====
[2024-10-03 15:01:58] 2024-10-03 13:01:58,357 [wrapper] ==== wrapper stderr END ====
[2024-10-03 15:01:58] 2024-10-03 13:01:58,363 [wrapper] apfmon messages muted
[2024-10-03 15:01:58]  *** Error codes and diagnostics ***
[2024-10-03 15:01:58]     "exeErrorCode": 0,
[2024-10-03 15:01:58]     "exeErrorDiag": "",
[2024-10-03 15:01:58]     "pilotErrorCode": 0,
[2024-10-03 15:01:58]     "pilotErrorDiag": "",
[2024-10-03 15:01:58]  *** Listing of results directory ***
[2024-10-03 15:01:58] total 822608
[2024-10-03 15:01:58] -rw-r--r--. 1 boinc boinc    484599 Oct  2 15:16 pilot3.tar.gz
[2024-10-03 15:01:58] -rw-r--r--. 1 boinc boinc      5653 Oct  2 15:30 queuedata.json
[2024-10-03 15:01:58] -rwx------. 1 boinc boinc     33814 Oct  2 15:30 runpilot2-wrapper.sh
[2024-10-03 15:01:58] -rw-r--r--. 1 boinc boinc       100 Oct  3 07:59 wrapper_26015_x86_64-pc-linux-gnu
[2024-10-03 15:01:58] -rwxr-xr-x. 1 boinc boinc      7986 Oct  3 07:59 run_atlas
[2024-10-03 15:01:58] -rw-r--r--. 1 boinc boinc       105 Oct  3 07:59 job.xml
[2024-10-03 15:01:58] -rw-r--r--. 2 boinc boinc 598796084 Oct  3 07:59 EVNT.41481121._000032.pool.root.1
[2024-10-03 15:01:58] -rw-r--r--. 2 boinc boinc     17537 Oct  3 07:59 start_atlas.sh
[2024-10-03 15:01:58] drwxrwx--x. 2 boinc boinc        68 Oct  3 07:59 shared
[2024-10-03 15:01:58] -rw-r--r--. 2 boinc boinc    498166 Oct  3 07:59 input.tar.gz
[2024-10-03 15:01:58] -rw-r--r--. 1 boinc boinc      6345 Oct  3 07:59 init_data.xml
[2024-10-03 15:01:58] -rw-r--r--. 1 boinc boinc         0 Oct  3 07:59 boinc_lockfile
[2024-10-03 15:01:58] -rw-r--r--. 1 boinc boinc      2537 Oct  3 07:59 pandaJob.out
[2024-10-03 15:01:58] -rw-------. 1 boinc boinc       424 Oct  3 07:59 setup.sh.local
[2024-10-03 15:01:58] -rw-------. 1 boinc boinc   1024595 Oct  3 07:59 agis_schedconf.cvmfs.json
[2024-10-03 15:01:58] drwx------. 4 boinc boinc      4096 Oct  3 08:00 pilot3
[2024-10-03 15:01:58] -rw-------. 1 boinc boinc 233775191 Oct  3 15:00 HITS.41481123._001960.pool.root.1
[2024-10-03 15:01:58] -rw-r--r--. 1 boinc boinc       532 Oct  3 15:00 boinc_task_state.xml
[2024-10-03 15:01:58] -rw-------. 1 boinc boinc        95 Oct  3 15:00 pilot_heartbeat.json
[2024-10-03 15:01:58] -rw-------. 1 boinc boinc      1015 Oct  3 15:01 memory_monitor_summary.json
[2024-10-03 15:01:58] -rw-------. 1 boinc boinc   1615815 Oct  3 15:01 agis_ddmendpoints.agis.ALL.json
[2024-10-03 15:01:58] -rw-------. 1 boinc boinc    507394 Oct  3 15:01 log.41481123._001960.job.log.tgz.1
[2024-10-03 15:01:58] -rw-------. 1 boinc boinc      7686 Oct  3 15:01 heartbeat.json
[2024-10-03 15:01:58] -rw-r--r--. 1 boinc boinc      8192 Oct  3 15:01 boinc_mmap_file
[2024-10-03 15:01:58] -rw-r--r--. 1 boinc boinc        28 Oct  3 15:01 wrapper_checkpoint.txt
[2024-10-03 15:01:58] -rw-------. 1 boinc boinc      4397 Oct  3 15:01 pilotlog.txt
[2024-10-03 15:01:58] -rw-------. 1 boinc boinc   2451429 Oct  3 15:01 log.41481123._001960.job.log.1
[2024-10-03 15:01:58] -rw-------. 1 boinc boinc       357 Oct  3 15:01 output.list
[2024-10-03 15:01:58] -rw-r--r--. 1 boinc boinc       620 Oct  3 15:01 runtime_log
[2024-10-03 15:01:58] -rw-------. 1 boinc boinc   2979840 Oct  3 15:01 result.tar.gz
[2024-10-03 15:01:58] -rw-------. 1 boinc boinc       646 Oct  3 15:01 TMaLDmEcEG6n7OlckoGmwREmGgkVDo1bjSoqOlfODmcQsKDmtVMwYm.diag
[2024-10-03 15:01:58] -rw-r--r--. 1 boinc boinc     10999 Oct  3 15:01 runtime_log.err
[2024-10-03 15:01:58] -rw-r--r--. 1 boinc boinc     21614 Oct  3 15:01 stderr.txt
[2024-10-03 15:01:58] HITS file was successfully produced:
[2024-10-03 15:01:58] -rw-------. 1 boinc boinc 233775191 Oct  3 15:00 shared/HITS.pool.root.1
[2024-10-03 15:01:58]  *** Contents of shared directory: ***
[2024-10-03 15:01:58] total 816484
[2024-10-03 15:01:58] -rw-r--r--. 2 boinc boinc 598796084 Oct  3 07:59 ATLAS.root_0
[2024-10-03 15:01:58] -rw-r--r--. 2 boinc boinc     17537 Oct  3 07:59 start_atlas.sh
[2024-10-03 15:01:58] -rw-r--r--. 2 boinc boinc    498166 Oct  3 07:59 input.tar.gz
[2024-10-03 15:01:58] -rw-------. 1 boinc boinc 233775191 Oct  3 15:00 HITS.pool.root.1
[2024-10-03 15:01:58] -rw-------. 1 boinc boinc   2979840 Oct  3 15:01 result.tar.gz
15:01:59 (23484): run_atlas exited; CPU time 92282.151540
15:01:59 (23484): called boinc_finish(0)

</stderr_txt>
]]>

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