Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:47:07 (96011): wrapper (7.7.26015): starting
10:47:07 (96011): wrapper: running run_atlas (--nthreads 6)
[2024-10-03 10:47:07] Arguments: --nthreads 6
[2024-10-03 10:47:07] Threads: 6
[2024-10-03 10:47:07] Checking for CVMFS
[2024-10-03 10:47:07] Probing /cvmfs/atlas.cern.ch... OK
[2024-10-03 10:47:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-10-03 10:47:07] Running cvmfs_config stat atlas.cern.ch
[2024-10-03 10:47:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-10-03 10:47:08] 2.11.5.0 59890 6 45872 137911 1 185 20489482 20971521 863 130560 0 45873 99.960 54182 3020 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2024-10-03 10:47:08] CVMFS is ok
[2024-10-03 10:47:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-10-03 10:47:08] Small home clusters do not require a local http proxy but it is suggested if
[2024-10-03 10:47:08] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2024-10-03 10:47:08] Further information can be found at the LHC@home message board.
[2024-10-03 10:47:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-10-03 10:47:08] Checking for apptainer binary...
[2024-10-03 10:47:08] Using apptainer found in PATH at /usr/bin/apptainer
[2024-10-03 10:47:08] Running /usr/bin/apptainer --version
[2024-10-03 10:47:08] apptainer version 1.3.4-1.el9
[2024-10-03 10:47:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-10-03 10:47:08] testio005
[2024-10-03 10:47:08] apptainer works
[2024-10-03 10:47:08] Set ATHENA_PROC_NUMBER=6
[2024-10-03 10:47:08] Set ATHENA_CORE_NUMBER=6
[2024-10-03 10:47:08] Starting ATLAS job with PandaID=6354282022
[2024-10-03 10:47:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-10-03 14:49:32]  *** The last 200 lines of the pilot log: ***
[2024-10-03 14:49:32] 2024-10-03 05:49:18,963 | INFO     | chi2: 6.006377873997755
[2024-10-03 14:49:32] 2024-10-03 05:49:18,963 | INFO     | model: linear, x: [1727920072.0, 1727920133.0, 1727920194.0, 1727920255.0, 1727920316.0, 1727920377.0, 1727920438.0, 1727920499.0, 1727920560.0, 1727920621.0, 1727
[2024-10-03 14:49:32] 2024-10-03 05:49:18,963 | INFO     | sum of square deviations: 3922276332.0
[2024-10-03 14:49:32] 2024-10-03 05:49:18,964 | INFO     | sum of deviations: 136211368677.00006
[2024-10-03 14:49:32] 2024-10-03 05:49:18,964 | INFO     | mean x: 1727927148.0
[2024-10-03 14:49:32] 2024-10-03 05:49:18,964 | INFO     | mean y: 2402515.974248927
[2024-10-03 14:49:32] 2024-10-03 05:49:18,965 | INFO     | -- intersect: -60004415433.8492
[2024-10-03 14:49:32] 2024-10-03 05:49:18,965 | INFO     | intersect: -60004415433.8492
[2024-10-03 14:49:32] 2024-10-03 05:49:18,965 | INFO     | chi2: 5.2607793229188955
[2024-10-03 14:49:32] 2024-10-03 05:49:18,965 | INFO     | current chi2=5.2607793229188955 (change=12.413447284204915 %)
[2024-10-03 14:49:32] 2024-10-03 05:49:18,965 | INFO     | right removable region: 232
[2024-10-03 14:49:32] 2024-10-03 05:49:18,965 | INFO     | model: linear, x: [1727920377.0, 1727920438.0, 1727920499.0, 1727920560.0, 1727920621.0, 1727920682.0, 1727920743.0, 1727920804.0, 1727920865.0, 1727920926.0, 1727
[2024-10-03 14:49:32] 2024-10-03 05:49:18,965 | INFO     | sum of square deviations: 3922276332.0
[2024-10-03 14:49:32] 2024-10-03 05:49:18,966 | INFO     | sum of deviations: 64190510144.999985
[2024-10-03 14:49:32] 2024-10-03 05:49:18,966 | INFO     | mean x: 1727927453.0
[2024-10-03 14:49:32] 2024-10-03 05:49:18,966 | INFO     | mean y: 2430760.82832618
[2024-10-03 14:49:32] 2024-10-03 05:49:18,966 | INFO     | -- intersect: -28276184847.333897
[2024-10-03 14:49:32] 2024-10-03 05:49:18,966 | INFO     | intersect: -28276184847.333897
[2024-10-03 14:49:32] 2024-10-03 05:49:18,966 | INFO     | chi2: 3.327892885582558
[2024-10-03 14:49:32] 2024-10-03 05:49:18,967 | INFO     | current chi2=3.327892885582558 (change=44.59401397322406 %)
[2024-10-03 14:49:32] 2024-10-03 05:49:18,967 | INFO     | model: linear, x: [1727920682.0, 1727920743.0, 1727920804.0, 1727920865.0, 1727920926.0, 1727920987.0, 1727921048.0, 1727921109.0, 1727921170.0, 1727921231.0, 1727
[2024-10-03 14:49:32] 2024-10-03 05:49:18,967 | INFO     | sum of square deviations: 3675146117.0
[2024-10-03 14:49:32] 2024-10-03 05:49:18,968 | INFO     | sum of deviations: 19525733725.500015
[2024-10-03 14:49:32] 2024-10-03 05:49:18,968 | INFO     | mean x: 1727927605.5
[2024-10-03 14:49:32] 2024-10-03 05:49:18,968 | INFO     | mean y: 2458315.714912281
[2024-10-03 14:49:32] 2024-10-03 05:49:18,968 | INFO     | -- intersect: -9177871730.44794
[2024-10-03 14:49:32] 2024-10-03 05:49:18,968 | INFO     | intersect: -9177871730.44794
[2024-10-03 14:49:32] 2024-10-03 05:49:18,968 | INFO     | chi2: 1.944771357699338
[2024-10-03 14:49:32] 2024-10-03 05:49:18,968 | INFO     | current chi2=1.944771357699338 (change=41.56147975421091 %)
[2024-10-03 14:49:32] 2024-10-03 05:49:18,968 | INFO     | model: linear, x: [1727920987.0, 1727921048.0, 1727921109.0, 1727921170.0, 1727921231.0, 1727921292.0, 1727921353.0, 1727921414.0, 1727921475.0, 1727921536.0, 1727
[2024-10-03 14:49:32] 2024-10-03 05:49:18,968 | INFO     | sum of square deviations: 3438620752.0
[2024-10-03 14:49:32] 2024-10-03 05:49:18,969 | INFO     | sum of deviations: -18541056750.000004
[2024-10-03 14:49:32] 2024-10-03 05:49:18,969 | INFO     | mean x: 1727927758.0
[2024-10-03 14:49:32] 2024-10-03 05:49:18,969 | INFO     | mean y: 2482807.3094170406
[2024-10-03 14:49:32] 2024-10-03 05:49:18,969 | INFO     | -- intersect: 9319476140.27418
[2024-10-03 14:49:32] 2024-10-03 05:49:18,969 | INFO     | intersect: 9319476140.27418
[2024-10-03 14:49:32] 2024-10-03 05:49:18,970 | INFO     | chi2: 0.8655832086699368
[2024-10-03 14:49:32] 2024-10-03 05:49:18,970 | INFO     | current chi2=0.8655832086699368 (change=55.49177515171137 %)
[2024-10-03 14:49:32] 2024-10-03 05:49:18,970 | INFO     | model: linear, x: [1727921292.0, 1727921353.0, 1727921414.0, 1727921475.0, 1727921536.0, 1727921597.0, 1727921658.0, 1727921719.0, 1727921780.0, 1727921841.0, 1727
[2024-10-03 14:49:32] 2024-10-03 05:49:18,970 | INFO     | sum of square deviations: 3212467674.5
[2024-10-03 14:49:32] 2024-10-03 05:49:18,971 | INFO     | sum of deviations: -22352479703.5
[2024-10-03 14:49:32] 2024-10-03 05:49:18,971 | INFO     | mean x: 1727927910.5
[2024-10-03 14:49:32] 2024-10-03 05:49:18,971 | INFO     | mean y: 2485344.3165137614
[2024-10-03 14:49:32] 2024-10-03 05:49:18,971 | INFO     | -- intersect: 12025477468.143538
[2024-10-03 14:49:32] 2024-10-03 05:49:18,971 | INFO     | intersect: 12025477468.143538
[2024-10-03 14:49:32] 2024-10-03 05:49:18,971 | INFO     | chi2: 0.8380691032970433
[2024-10-03 14:49:32] 2024-10-03 05:49:18,971 | INFO     | current chi2=0.8380691032970433 (change=3.1786782711707033 %)
[2024-10-03 14:49:32] 2024-10-03 05:49:18,971 | INFO     | left removable region: 40
[2024-10-03 14:49:32] 2024-10-03 05:49:18,971 | INFO     | model: linear, x: [1727922512.0, 1727922573.0, 1727922634.0, 1727922695.0, 1727922756.0, 1727922817.0, 1727922878.0, 1727922939.0, 1727923000.0, 1727923061.0, 1727
[2024-10-03 14:49:32] 2024-10-03 05:49:18,972 | INFO     | sum of square deviations: 2194675568.0
[2024-10-03 14:49:32] 2024-10-03 05:49:18,972 | INFO     | sum of deviations: 5509800356.000001
[2024-10-03 14:49:32] 2024-10-03 05:49:18,972 | INFO     | mean x: 1727928337.5
[2024-10-03 14:49:32] 2024-10-03 05:49:18,972 | INFO     | mean y: 2484238.4479166665
[2024-10-03 14:49:32] 2024-10-03 05:49:18,972 | INFO     | -- intersect: -4335532873.473561
[2024-10-03 14:49:32] 2024-10-03 05:49:18,972 | INFO     | intersect: -4335532873.473561
[2024-10-03 14:49:32] 2024-10-03 05:49:18,973 | INFO     | chi2: 0.0014989294320678682
[2024-10-03 14:49:32] 2024-10-03 05:49:18,973 | INFO     | -- intersect: -4335532873.473561
[2024-10-03 14:49:32] 2024-10-03 05:49:18,973 | INFO     | current memory leak: 2.51 B/s (using 192 data points, chi2=0.00)
[2024-10-03 14:49:32] 2024-10-03 05:49:18,973 | INFO     | ..............................
[2024-10-03 14:49:32] 2024-10-03 05:49:18,973 | INFO     | . Timing measurements:
[2024-10-03 14:49:32] 2024-10-03 05:49:18,973 | INFO     | . get job = 0 s
[2024-10-03 14:49:32] 2024-10-03 05:49:18,973 | INFO     | . initial setup = 5 s
[2024-10-03 14:49:32] 2024-10-03 05:49:18,973 | INFO     | . payload setup = 6 s
[2024-10-03 14:49:32] 2024-10-03 05:49:18,973 | INFO     | . stage-in = 0 s
[2024-10-03 14:49:32] 2024-10-03 05:49:18,973 | INFO     | . payload execution = 14481 s
[2024-10-03 14:49:32] 2024-10-03 05:49:18,973 | INFO     | . stage-out = 4 s
[2024-10-03 14:49:32] 2024-10-03 05:49:18,973 | INFO     | . log creation = 0 s
[2024-10-03 14:49:32] 2024-10-03 05:49:18,974 | INFO     | ..............................
[2024-10-03 14:49:32] 2024-10-03 05:49:19,034 | INFO     | 
[2024-10-03 14:49:32] 2024-10-03 05:49:19,034 | INFO     | job summary report
[2024-10-03 14:49:32] 2024-10-03 05:49:19,035 | INFO     | --------------------------------------------------
[2024-10-03 14:49:32] 2024-10-03 05:49:19,035 | INFO     | PanDA job id: 6354282022
[2024-10-03 14:49:32] 2024-10-03 05:49:19,035 | INFO     | task id: 41481181
[2024-10-03 14:49:32] 2024-10-03 05:49:19,035 | INFO     | errors: (none)
[2024-10-03 14:49:32] 2024-10-03 05:49:19,035 | INFO     | status: LOG_TRANSFER = DONE 
[2024-10-03 14:49:32] 2024-10-03 05:49:19,035 | INFO     | pilot state: finished 
[2024-10-03 14:49:32] 2024-10-03 05:49:19,035 | INFO     | transexitcode: 0
[2024-10-03 14:49:32] 2024-10-03 05:49:19,035 | INFO     | exeerrorcode: 0
[2024-10-03 14:49:32] 2024-10-03 05:49:19,035 | INFO     | exeerrordiag: 
[2024-10-03 14:49:32] 2024-10-03 05:49:19,035 | INFO     | exitcode: 0
[2024-10-03 14:49:32] 2024-10-03 05:49:19,035 | INFO     | exitmsg: OK
[2024-10-03 14:49:32] 2024-10-03 05:49:19,035 | INFO     | cpuconsumptiontime: 56151 s
[2024-10-03 14:49:32] 2024-10-03 05:49:19,036 | INFO     | nevents: 400
[2024-10-03 14:49:32] 2024-10-03 05:49:19,036 | INFO     | neventsw: 0
[2024-10-03 14:49:32] 2024-10-03 05:49:19,036 | INFO     | pid: 106755
[2024-10-03 14:49:32] 2024-10-03 05:49:19,036 | INFO     | pgrp: 106755
[2024-10-03 14:49:32] 2024-10-03 05:49:19,036 | INFO     | corecount: 6
[2024-10-03 14:49:32] 2024-10-03 05:49:19,036 | INFO     | event service: False
[2024-10-03 14:49:32] 2024-10-03 05:49:19,036 | INFO     | sizes: {0: 2435481, 5: 2435687, 11: 2435743, 14491: 2466326, 14497: 2475406, 14500: 2475520}
[2024-10-03 14:49:32] 2024-10-03 05:49:19,036 | INFO     | --------------------------------------------------
[2024-10-03 14:49:32] 2024-10-03 05:49:19,036 | INFO     | 
[2024-10-03 14:49:32] 2024-10-03 05:49:19,036 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2024-10-03 14:49:32] 2024-10-03 05:49:19,051 | INFO     | queue jobs had 0 job(s) [purged]
[2024-10-03 14:49:32] 2024-10-03 05:49:19,052 | INFO     | queue payloads had 0 job(s) [purged]
[2024-10-03 14:49:32] 2024-10-03 05:49:19,052 | INFO     | queue data_in had 0 job(s) [purged]
[2024-10-03 14:49:32] 2024-10-03 05:49:19,052 | INFO     | queue data_out had 0 job(s) [purged]
[2024-10-03 14:49:32] 2024-10-03 05:49:19,052 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-10-03 14:49:32] 2024-10-03 05:49:19,052 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-10-03 14:49:32] 2024-10-03 05:49:19,052 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-10-03 14:49:32] 2024-10-03 05:49:19,052 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-10-03 14:49:32] 2024-10-03 05:49:19,052 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-10-03 14:49:32] 2024-10-03 05:49:19,052 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-10-03 14:49:32] 2024-10-03 05:49:19,052 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-10-03 14:49:32] 2024-10-03 05:49:19,052 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-10-03 14:49:32] 2024-10-03 05:49:19,052 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-10-03 14:49:32] 2024-10-03 05:49:19,052 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-10-03 14:49:32] 2024-10-03 05:49:19,052 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-10-03 14:49:32] 2024-10-03 05:49:19,053 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-10-03 14:49:32] 2024-10-03 05:49:19,053 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-10-03 14:49:32] 2024-10-03 05:49:19,053 | INFO     | queue completed_jobids has 1 job(s)
[2024-10-03 14:49:32] 2024-10-03 05:49:19,053 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-10-03 14:49:32] 2024-10-03 05:49:19,053 | INFO     | queue messages had 0 job(s) [purged]
[2024-10-03 14:49:32] 2024-10-03 05:49:19,053 | INFO     | job 6354282022 has completed (purged errors)
[2024-10-03 14:49:32] 2024-10-03 05:49:19,053 | INFO     | overall cleanup function is called
[2024-10-03 14:49:32] 2024-10-03 05:49:20,060 | INFO     | --- collectZombieJob: --- 10, [106755]
[2024-10-03 14:49:32] 2024-10-03 05:49:20,060 | INFO     | zombie collector waiting for pid 106755
[2024-10-03 14:49:32] 2024-10-03 05:49:20,060 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-10-03 14:49:32] 2024-10-03 05:49:20,060 | INFO     | collected zombie processes
[2024-10-03 14:49:32] 2024-10-03 05:49:20,060 | INFO     | will  attempt to kill all subprocesses of pid=106755
[2024-10-03 14:49:32] 2024-10-03 05:49:20,113 | INFO     | process IDs to be killed: [106755] (in reverse order)
[2024-10-03 14:49:32] 2024-10-03 05:49:20,157 | WARNING  | found no corresponding commands to process id(s)
[2024-10-03 14:49:32] 2024-10-03 05:49:20,157 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-10-03 14:49:32] 2024-10-03 05:49:20,160 | INFO     | did not find any defunct processes belonging to 106755
[2024-10-03 14:49:32] 2024-10-03 05:49:20,163 | INFO     | did not find any defunct processes belonging to 106755
[2024-10-03 14:49:32] 2024-10-03 05:49:20,163 | INFO     | ready for new job
[2024-10-03 14:49:32] 2024-10-03 05:49:20,163 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-10-03 14:49:32] 2024-10-03 05:49:20,164 | INFO     | *************************************
[2024-10-03 14:49:32] 2024-10-03 05:49:20,164 | INFO     | ***  PanDA Pilot version 3.8.2.8  ***
[2024-10-03 14:49:32] 2024-10-03 05:49:20,164 | INFO     | *************************************
[2024-10-03 14:49:32] 2024-10-03 05:49:20,164 | INFO     | 
[2024-10-03 14:49:32] 2024-10-03 05:49:20,176 | INFO     | architecture information:
[2024-10-03 14:49:32] 2024-10-03 05:49:20,176 | INFO     | executing command: cat /etc/os-release
[2024-10-03 14:49:32] 2024-10-03 05:49:20,187 | INFO     | cat /etc/os-release:
[2024-10-03 14:49:32] NAME="CentOS Linux"
[2024-10-03 14:49:32] VERSION="7 (Core)"
[2024-10-03 14:49:32] ID="centos"
[2024-10-03 14:49:32] ID_LIKE="rhel fedora"
[2024-10-03 14:49:32] VERSION_ID="7"
[2024-10-03 14:49:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-10-03 14:49:32] ANSI_COLOR="0;31"
[2024-10-03 14:49:32] CPE_NAME="cpe:/o:centos:centos:7"
[2024-10-03 14:49:32] HOME_URL="https://www.centos.org/"
[2024-10-03 14:49:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-10-03 14:49:32] 
[2024-10-03 14:49:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-10-03 14:49:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-10-03 14:49:32] REDHAT_SUPPORT_PRODUCT="centos"
[2024-10-03 14:49:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-10-03 14:49:32] 
[2024-10-03 14:49:32] 2024-10-03 05:49:20,187 | INFO     | *************************************
[2024-10-03 14:49:32] 2024-10-03 05:49:20,690 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2024-10-03 14:49:32] 2024-10-03 05:49:20,702 | INFO     | sufficient remaining disk space (90547683328 B)
[2024-10-03 14:49:32] 2024-10-03 05:49:20,703 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-10-03 14:49:32] 2024-10-03 05:49:20,703 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-10-03 14:49:32] 2024-10-03 05:49:20,703 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-10-03 14:49:32] 2024-10-03 05:49:20,846 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-10-03 14:49:32] 2024-10-03 05:49:20,846 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-10-03 14:49:32] 2024-10-03 05:49:20,846 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-10-03 14:49:32] 2024-10-03 05:49:20,846 | INFO     | will abort loop
[2024-10-03 14:49:32] 2024-10-03 05:49:21,037 | INFO     | found 0 job(s) in 20 queues
[2024-10-03 14:49:32] 2024-10-03 05:49:21,037 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-10-03 14:49:32] 2024-10-03 05:49:21,037 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-10-03 14:49:32] 2024-10-03 05:49:21,539 | INFO     | all data control threads have been joined
[2024-10-03 14:49:32] 2024-10-03 05:49:21,693 | INFO     | all payload control threads have been joined
[2024-10-03 14:49:32] 2024-10-03 05:49:21,708 | INFO     | [job] retrieve thread has finished
[2024-10-03 14:49:32] 2024-10-03 05:49:21,708 | INFO     | [job] queue monitor thread has finished
[2024-10-03 14:49:32] 2024-10-03 05:49:21,785 | INFO     | all job control threads have been joined
[2024-10-03 14:49:32] 2024-10-03 05:49:21,839 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-10-03 14:49:32] 2024-10-03 05:49:21,851 | INFO     | [job] job monitor thread has finished
[2024-10-03 14:49:32] 2024-10-03 05:49:22,278 | INFO     | [job] validate thread has finished
[2024-10-03 14:49:32] 2024-10-03 05:49:22,340 | INFO     | [payload] validate_post thread has finished
[2024-10-03 14:49:32] 2024-10-03 05:49:22,340 | INFO     | [job] create_data_payload thread has finished
[2024-10-03 14:49:32] 2024-10-03 05:49:22,398 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-10-03 14:49:32] 2024-10-03 05:49:22,535 | INFO     | [payload] run_realtimelog thread has finished
[2024-10-03 14:49:32] 2024-10-03 05:49:22,545 | INFO     | [data] control thread has finished
[2024-10-03 14:49:32] 2024-10-03 05:49:22,551 | INFO     | [payload] validate_pre thread has finished
[2024-10-03 14:49:32] 2024-10-03 05:49:22,555 | INFO     | [data] copytool_in thread has finished
[2024-10-03 14:49:32] 2024-10-03 05:49:22,617 | INFO     | [payload] failed_post thread has finished
[2024-10-03 14:49:32] 2024-10-03 05:49:22,698 | INFO     | [payload] control thread has finished
[2024-10-03 14:49:32] 2024-10-03 05:49:22,787 | INFO     | [job] control thread has finished
[2024-10-03 14:49:32] 2024-10-03 05:49:23,079 | INFO     | [payload] execute_payloads thread has finished
[2024-10-03 14:49:32] 2024-10-03 05:49:23,844 | INFO     | [data] copytool_out thread has finished
[2024-10-03 14:49:32] 2024-10-03 05:49:26,403 | INFO     | [data] queue_monitor thread has finished
[2024-10-03 14:49:32] 2024-10-03 05:49:27,335 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140184333563712)>', '<ExcThread(monitor, started 140183706007296)>']
[2024-10-03 14:49:32] 2024-10-03 05:49:28,072 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-10-03 14:49:32] 2024-10-03 05:49:28,072 | INFO     | [monitor] control thread has ended
[2024-10-03 14:49:32] 2024-10-03 05:49:32,360 | INFO     | all workflow threads have been joined
[2024-10-03 14:49:32] 2024-10-03 05:49:32,360 | INFO     | end of generic workflow (traces error code: 0)
[2024-10-03 14:49:32] 2024-10-03 05:49:32,360 | INFO     | traces error code: 0
[2024-10-03 14:49:32] 2024-10-03 05:49:32,360 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-10-03 14:49:32] 2024-10-03 05:49:32,427 [wrapper] ==== pilot stdout END ====
[2024-10-03 14:49:32] 2024-10-03 05:49:32,429 [wrapper] ==== wrapper stdout RESUME ====
[2024-10-03 14:49:32] 2024-10-03 05:49:32,431 [wrapper] pilotpid: 99909
[2024-10-03 14:49:32] 2024-10-03 05:49:32,432 [wrapper] Pilot exit status: 0
[2024-10-03 14:49:32] 2024-10-03 05:49:32,439 [wrapper] pandaids: 6354282022
[2024-10-03 14:49:32] 2024-10-03 05:49:32,462 [wrapper] cleanup supervisor_pilot  311641 99910
[2024-10-03 14:49:32] 2024-10-03 05:49:32,464 [wrapper] Test setup, not cleaning
[2024-10-03 14:49:32] 2024-10-03 05:49:32,466 [wrapper] ==== wrapper stdout END ====
[2024-10-03 14:49:32] 2024-10-03 05:49:32,468 [wrapper] ==== wrapper stderr END ====
[2024-10-03 14:49:32] 2024-10-03 05:49:32,471 [wrapper] apfmon messages muted
[2024-10-03 14:49:32]  *** Error codes and diagnostics ***
[2024-10-03 14:49:32]     "exeErrorCode": 0,
[2024-10-03 14:49:32]     "exeErrorDiag": "",
[2024-10-03 14:49:32]     "pilotErrorCode": 0,
[2024-10-03 14:49:32]     "pilotErrorDiag": "",
[2024-10-03 14:49:32]  *** Listing of results directory ***
[2024-10-03 14:49:32] total 887856
[2024-10-03 14:49:32] -rw-r--r--. 1 boinc boinc    484599 Oct  2 22:16 pilot3.tar.gz
[2024-10-03 14:49:32] -rw-r--r--. 1 boinc boinc      5653 Oct  2 22:27 queuedata.json
[2024-10-03 14:49:32] -rwx------. 1 boinc boinc     33814 Oct  2 22:28 runpilot2-wrapper.sh
[2024-10-03 14:49:32] -rw-r--r--. 1 boinc boinc       100 Oct  3 10:47 wrapper_26015_x86_64-pc-linux-gnu
[2024-10-03 14:49:32] -rwxr-xr-x. 1 boinc boinc      7986 Oct  3 10:47 run_atlas
[2024-10-03 14:49:32] -rw-r--r--. 1 boinc boinc       105 Oct  3 10:47 job.xml
[2024-10-03 14:49:32] -rw-r--r--. 2 boinc boinc 641082104 Oct  3 10:47 EVNT.41466530._000045.pool.root.1
[2024-10-03 14:49:32] -rw-r--r--. 2 boinc boinc     17537 Oct  3 10:47 start_atlas.sh
[2024-10-03 14:49:32] drwxrwx--x. 2 boinc boinc        68 Oct  3 10:47 shared
[2024-10-03 14:49:32] -rw-r--r--. 2 boinc boinc    498175 Oct  3 10:47 input.tar.gz
[2024-10-03 14:49:32] -rw-r--r--. 1 boinc boinc      9351 Oct  3 10:47 init_data.xml
[2024-10-03 14:49:32] -rw-r--r--. 1 boinc boinc         0 Oct  3 10:47 boinc_lockfile
[2024-10-03 14:49:32] -rw-r--r--. 1 boinc boinc      2533 Oct  3 10:47 pandaJob.out
[2024-10-03 14:49:32] -rw-------. 1 boinc boinc       424 Oct  3 10:47 setup.sh.local
[2024-10-03 14:49:32] -rw-------. 1 boinc boinc   1024603 Oct  3 10:47 agis_schedconf.cvmfs.json
[2024-10-03 14:49:32] drwx------. 4 boinc boinc      4096 Oct  3 10:47 pilot3
[2024-10-03 14:49:32] -rw-------. 1 boinc boinc 260552602 Oct  3 14:48 HITS.41481181._002608.pool.root.1
[2024-10-03 14:49:32] -rw-r--r--. 1 boinc boinc       531 Oct  3 14:48 boinc_task_state.xml
[2024-10-03 14:49:32] -rw-------. 1 boinc boinc        95 Oct  3 14:49 pilot_heartbeat.json
[2024-10-03 14:49:32] -rw-------. 1 boinc boinc      1018 Oct  3 14:49 memory_monitor_summary.json
[2024-10-03 14:49:32] -rw-------. 1 boinc boinc   1615815 Oct  3 14:49 agis_ddmendpoints.agis.ALL.json
[2024-10-03 14:49:32] -rw-------. 1 boinc boinc    380648 Oct  3 14:49 log.41481181._002608.job.log.tgz.1
[2024-10-03 14:49:32] -rw-------. 1 boinc boinc      7660 Oct  3 14:49 heartbeat.json
[2024-10-03 14:49:32] -rw-r--r--. 1 boinc boinc      8192 Oct  3 14:49 boinc_mmap_file
[2024-10-03 14:49:32] -rw-r--r--. 1 boinc boinc        28 Oct  3 14:49 wrapper_checkpoint.txt
[2024-10-03 14:49:32] -rw-------. 1 boinc boinc      4397 Oct  3 14:49 pilotlog.txt
[2024-10-03 14:49:32] -rw-------. 1 boinc boinc   1449398 Oct  3 14:49 log.41481181._002608.job.log.1
[2024-10-03 14:49:32] -rw-------. 1 boinc boinc       357 Oct  3 14:49 output.list
[2024-10-03 14:49:32] -rw-r--r--. 1 boinc boinc       620 Oct  3 14:49 runtime_log
[2024-10-03 14:49:32] -rw-------. 1 boinc boinc   1853440 Oct  3 14:49 result.tar.gz
[2024-10-03 14:49:32] -rw-r--r--. 1 boinc boinc     10958 Oct  3 14:49 runtime_log.err
[2024-10-03 14:49:32] -rw-------. 1 boinc boinc       635 Oct  3 14:49 47YKDm2ZEG6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmVlnKDmFKF6on.diag
[2024-10-03 14:49:32] -rw-r--r--. 1 boinc boinc     21570 Oct  3 14:49 stderr.txt
[2024-10-03 14:49:32] HITS file was successfully produced:
[2024-10-03 14:49:32] -rw-------. 1 boinc boinc 260552602 Oct  3 14:48 shared/HITS.pool.root.1
[2024-10-03 14:49:32]  *** Contents of shared directory: ***
[2024-10-03 14:49:32] total 882832
[2024-10-03 14:49:32] -rw-r--r--. 2 boinc boinc 641082104 Oct  3 10:47 ATLAS.root_0
[2024-10-03 14:49:32] -rw-r--r--. 2 boinc boinc     17537 Oct  3 10:47 start_atlas.sh
[2024-10-03 14:49:32] -rw-r--r--. 2 boinc boinc    498175 Oct  3 10:47 input.tar.gz
[2024-10-03 14:49:32] -rw-------. 1 boinc boinc 260552602 Oct  3 14:48 HITS.pool.root.1
[2024-10-03 14:49:32] -rw-------. 1 boinc boinc   1853440 Oct  3 14:49 result.tar.gz
14:49:33 (96011): run_atlas exited; CPU time 56027.879152
14:49:33 (96011): called boinc_finish(0)

</stderr_txt>
]]>

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